HEADER LIPID BINDING PROTEIN 15-FEB-12 4AIW TITLE GAPR-1 WITH BOUND INOSITOL HEXAKISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GOLGI-ASSOCIATED PLANT PATHOGENESIS-RELATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAPR-1, GOLGI-ASSOCIATED PR-1 PROTEIN, GLIOMA PATHOGENESIS- COMPND 5 RELATED PROTEIN 2, GLIPR 2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: XL-1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PQE60 KEYWDS LIPID-BINDING PROTEIN, GOLGI APPARATUS, MYRISTATE, LIPID BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHOUTEN,P.GROS,J.B.HELMS REVDAT 5 20-DEC-23 4AIW 1 REMARK REVDAT 4 07-OCT-20 4AIW 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN LINK ATOM REVDAT 3 06-FEB-19 4AIW 1 REMARK REVDAT 2 30-JAN-19 4AIW 1 REMARK REVDAT 1 08-AUG-12 4AIW 0 JRNL AUTH J.VAN GALEN,N.K.OLRICHS,A.SCHOUTEN,R.L.SERRANO, JRNL AUTH 2 E.N.M.NOLTE-'T HOEN,R.EERLAND,D.KALOYANOVA,P.GROS,J.B.HELMS JRNL TITL INTERACTION OF GAPR-1 WITH LIPID BILAYERS IS REGULATED BY JRNL TITL 2 ALTERNATIVE HOMODIMERIZATION. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1818 2175 2012 JRNL REFN ISSN 0006-3002 JRNL PMID 22560898 JRNL DOI 10.1016/J.BBAMEM.2012.04.016 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.L.SERRANO,A.KUHN,A.HENDRICKS,J.B.HELMS,I.SINNING, REMARK 1 AUTH 2 M.R.GROVES REMARK 1 TITL STRUCTURAL ANALYSIS OF THE HUMAN GOLGI-ASSOCIATED PLANT REMARK 1 TITL 2 PATHOGENESIS RELATED PROTEIN GAPR-1 IMPLICATES DIMERIZATION REMARK 1 TITL 3 AS A REGULATORY MECHANISM. REMARK 1 REF J.MOL.BIOL. V. 339 173 2004 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 15123429 REMARK 1 DOI 10.1016/J.JMB.2004.03.015 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 20632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1116 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1552 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1197 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.438 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1300 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1778 ; 1.834 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 6.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 61 ;34.425 ;24.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 219 ;12.614 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;25.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 185 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 990 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 774 ; 1.181 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1245 ; 2.025 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 526 ; 3.136 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 525 ; 4.881 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3250 14.8900 10.8770 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0494 REMARK 3 T33: 0.0612 T12: 0.0396 REMARK 3 T13: 0.0046 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6404 L22: 1.4889 REMARK 3 L33: 3.8768 L12: -0.7339 REMARK 3 L13: 0.0917 L23: -0.1205 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 0.0137 S13: 0.0859 REMARK 3 S21: -0.0387 S22: -0.0122 S23: -0.0078 REMARK 3 S31: -0.2781 S32: -0.1632 S33: -0.0338 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1320 8.8990 7.7880 REMARK 3 T TENSOR REMARK 3 T11: 0.0252 T22: 0.0171 REMARK 3 T33: 0.0527 T12: -0.0088 REMARK 3 T13: -0.0116 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.8459 L22: 0.6900 REMARK 3 L33: 1.1439 L12: -0.0674 REMARK 3 L13: -0.1716 L23: -0.1821 REMARK 3 S TENSOR REMARK 3 S11: -0.0064 S12: -0.0416 S13: 0.0231 REMARK 3 S21: 0.0243 S22: -0.0131 S23: -0.1453 REMARK 3 S31: -0.0651 S32: 0.0976 S33: 0.0195 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): -10.6370 0.1280 9.8510 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.0459 REMARK 3 T33: 0.0465 T12: -0.0174 REMARK 3 T13: -0.0144 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.5697 L22: 2.2118 REMARK 3 L33: 3.8108 L12: 0.3873 REMARK 3 L13: -0.1382 L23: -1.4057 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: -0.0055 S13: -0.0221 REMARK 3 S21: -0.1102 S22: -0.0247 S23: 0.0900 REMARK 3 S31: 0.3540 S32: -0.2016 S33: -0.0215 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 104 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4480 5.9750 15.5920 REMARK 3 T TENSOR REMARK 3 T11: 0.0268 T22: 0.0458 REMARK 3 T33: 0.0430 T12: -0.0032 REMARK 3 T13: -0.0112 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.5535 L22: 0.9241 REMARK 3 L33: 2.1197 L12: 0.1234 REMARK 3 L13: -0.4333 L23: -0.2884 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.0244 S13: 0.0040 REMARK 3 S21: 0.0675 S22: 0.0050 S23: 0.0629 REMARK 3 S31: -0.0092 S32: -0.1797 S33: -0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 22.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SMB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 100 MM MMT, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.52950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.52950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.04400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.43600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.04400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.43600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.52950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.04400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.43600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.52950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.04400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 32.43600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 132 CG ARG A 132 CD -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 37 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SMB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GOLGI-ASSOCIATED PR-1 PROTEIN DBREF 4AIW A 1 154 UNP Q9H4G4 GAPR1_HUMAN 1 154 SEQRES 1 A 154 MET GLY LYS SER ALA SER LYS GLN PHE HIS ASN GLU VAL SEQRES 2 A 154 LEU LYS ALA HIS ASN GLU TYR ARG GLN LYS HIS GLY VAL SEQRES 3 A 154 PRO PRO LEU LYS LEU OCS LYS ASN LEU ASN ARG GLU ALA SEQRES 4 A 154 GLN GLN TYR SER GLU ALA LEU ALA SER THR ARG ILE LEU SEQRES 5 A 154 LYS HIS SER PRO GLU SER SER ARG GLY GLN CYS GLY GLU SEQRES 6 A 154 ASN LEU ALA TRP ALA SER TYR ASP GLN THR GLY LYS GLU SEQRES 7 A 154 VAL ALA ASP ARG TRP TYR SER GLU ILE LYS ASN TYR ASN SEQRES 8 A 154 PHE GLN GLN PRO GLY PHE THR SER GLY THR GLY HIS PHE SEQRES 9 A 154 THR ALA MET VAL TRP LYS ASN THR LYS LYS MET GLY VAL SEQRES 10 A 154 GLY LYS ALA SER ALA SER ASP GLY SER SER PHE VAL VAL SEQRES 11 A 154 ALA ARG TYR PHE PRO ALA GLY ASN VAL VAL ASN GLU GLY SEQRES 12 A 154 PHE PHE GLU GLU ASN VAL LEU PRO PRO LYS LYS MODRES 4AIW OCS A 32 CYS CYSTEINESULFONIC ACID HET OCS A 32 9 HET IHP A1001 36 HETNAM OCS CYSTEINESULFONIC ACID HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 1 OCS C3 H7 N O5 S FORMUL 2 IHP C6 H18 O24 P6 FORMUL 3 HOH *173(H2 O) HELIX 1 1 SER A 4 HIS A 24 1 21 HELIX 2 2 OCS A 32 ARG A 50 1 19 HELIX 3 3 SER A 55 ARG A 60 1 6 HELIX 4 4 THR A 75 SER A 85 1 11 HELIX 5 5 GLU A 86 TYR A 90 5 5 HELIX 6 6 THR A 101 TRP A 109 1 9 HELIX 7 7 GLY A 143 VAL A 149 1 7 SHEET 1 AA 4 LYS A 30 LEU A 31 0 SHEET 2 AA 4 LYS A 114 SER A 121 1 N MET A 115 O LYS A 30 SHEET 3 AA 4 SER A 127 PHE A 134 -1 O PHE A 128 N ALA A 120 SHEET 4 AA 4 GLY A 64 ALA A 70 -1 O GLY A 64 N TYR A 133 LINK C LEU A 31 N OCS A 32 1555 1555 1.34 LINK C OCS A 32 N LYS A 33 1555 1555 1.33 CISPEP 1 PHE A 134 PRO A 135 0 -11.40 SITE 1 AC1 4 LYS A 7 LYS A 53 LYS A 154 HOH A2173 CRYST1 44.088 64.872 103.059 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009703 0.00000