HEADER IMMUNE SYSTEM 15-FEB-12 4AIZ TITLE CRYSTALLOGRAPHIC STRUCTURE OF 3MJL2 FROM THE GERMINAL LINE LAMBDA 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: V2-17 PROTEIN; COMPND 3 CHAIN: A, C, D; COMPND 4 SYNONYM: 3MJL2; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: V2-17 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: 3MJL2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS IMMUNE SYSTEM, AMYLOIDOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.I.VILLALBA,O.D.LUNA,E.RUDINO-PINERA,R.SANCHEZ,R.SANCHEZ-LOPEZ, AUTHOR 2 S.ROJAS-TREJO,T.OLAMENDI-PORTUGAL,D.A.FERNANDEZ-VELASCO,B.BECERRIL REVDAT 4 20-DEC-23 4AIZ 1 REMARK REVDAT 3 11-FEB-15 4AIZ 1 JRNL REVDAT 2 14-JAN-15 4AIZ 1 JRNL REVDAT 1 06-MAR-13 4AIZ 0 JRNL AUTH M.I.VILLALBA,J.C.CANUL-TEC,O.D.LUNA-MARTINEZ, JRNL AUTH 2 R.SANCHEZ-ALCALA,T.OLAMENDI-PORTUGAL,E.RUDINO-PINERA, JRNL AUTH 3 S.ROJAS,R.SANCHEZ-LOPEZ,D.A.FERNANDEZ-VELASCO,B.BECERRIL JRNL TITL SITE-DIRECTED MUTAGENESIS REVEALS REGIONS IMPLICATED IN THE JRNL TITL 2 STABILITY AND FIBER FORMATION OF HUMAN LAMBDA3R LIGHT JRNL TITL 3 CHAINS. JRNL REF J.BIOL.CHEM. V. 290 2577 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 25505244 JRNL DOI 10.1074/JBC.M114.629550 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.5 REMARK 3 NUMBER OF REFLECTIONS : 31297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2301 - 3.8903 0.97 3447 186 0.1510 0.1768 REMARK 3 2 3.8903 - 3.0885 0.96 3287 172 0.1413 0.1857 REMARK 3 3 3.0885 - 2.6982 0.86 2920 172 0.1741 0.2405 REMARK 3 4 2.6982 - 2.4516 0.77 2609 137 0.1821 0.2582 REMARK 3 5 2.4516 - 2.2759 0.74 2493 142 0.1823 0.2476 REMARK 3 6 2.2759 - 2.1418 0.74 2495 139 0.1733 0.2433 REMARK 3 7 2.1418 - 2.0345 0.74 2491 133 0.1823 0.2256 REMARK 3 8 2.0345 - 1.9460 0.73 2479 130 0.1854 0.2594 REMARK 3 9 1.9460 - 1.8711 0.73 2467 145 0.1895 0.2374 REMARK 3 10 1.8711 - 1.8065 0.74 2507 113 0.1919 0.2804 REMARK 3 11 1.8065 - 1.7500 0.74 2514 119 0.2028 0.2923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.49 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 61.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29720 REMARK 3 B22 (A**2) : 0.83860 REMARK 3 B33 (A**2) : -1.13570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01090 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.030 3474 REMARK 3 ANGLE : 2.056 4752 REMARK 3 CHIRALITY : 0.146 514 REMARK 3 PLANARITY : 0.006 627 REMARK 3 DIHEDRAL : 14.680 1286 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051294. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL CHANNEL CUT, REMARK 200 SI(111), 1M LONG RH COATED REMARK 200 TOROIDAL MIRROR FOR VERTICAL AND REMARK 200 HORIZONTAL FOCUSING. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31323 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LIL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CITRATE, 0.1 M HEPES, 30 REMARK 280 % MPD, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.70100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.47300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.70100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.47300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER B 1 REMARK 465 TYR B 2 REMARK 465 SER C 1 REMARK 465 SER D 1 REMARK 465 TYR D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2020 O HOH C 2021 1.94 REMARK 500 NE2 GLN A 88 O HOH A 2097 1.96 REMARK 500 OG SER C 65 O HOH C 2037 1.96 REMARK 500 NE2 GLN C 88 O HOH C 2100 2.03 REMARK 500 O HOH A 2093 O HOH A 2095 2.04 REMARK 500 O HOH C 2036 O HOH C 2037 2.09 REMARK 500 O HOH B 2042 O HOH B 2086 2.13 REMARK 500 O HOH B 2023 O HOH B 2070 2.15 REMARK 500 O HOH C 2048 O HOH C 2108 2.16 REMARK 500 O HOH C 2096 O HOH C 2098 2.18 REMARK 500 O HOH D 2018 O HOH D 2032 2.19 REMARK 500 O HOH A 2036 O HOH A 2041 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2107 O HOH D 2048 4554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -45.55 76.73 REMARK 500 SER A 89 -151.02 -149.03 REMARK 500 ASP B 50 -43.89 79.05 REMARK 500 SER B 51 -2.70 -146.60 REMARK 500 SER B 89 -151.98 -146.82 REMARK 500 ASP C 50 -43.78 77.37 REMARK 500 SER C 89 -151.25 -152.67 REMARK 500 ASP C 91 -179.98 -69.55 REMARK 500 ASP D 50 -43.99 76.43 REMARK 500 SER D 51 -1.91 -143.86 REMARK 500 SER D 89 -151.75 -149.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2027 DISTANCE = 6.54 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 88Q WAS CONSTRUCTED BASED ON THE ELECTRON DENSITY IN THE POSITION, REMARK 600 HOWEVER WE WERE NOT ABLE TO FIND THE ORIGIN OF IT. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 88Q D 1109 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS DEPOSIT IS THE FIRST REFERENCE TO THE SEQUENCE OF 3MJL2. DBREF 4AIZ A 1 96 UNP Q5NV90 Q5NV90_HUMAN 1 96 DBREF 4AIZ A 97 108 PDB 4AIZ 4AIZ 97 108 DBREF 4AIZ B 1 96 UNP Q5NV90 Q5NV90_HUMAN 1 96 DBREF 4AIZ B 97 108 PDB 4AIZ 4AIZ 97 108 DBREF 4AIZ C 1 96 UNP Q5NV90 Q5NV90_HUMAN 1 96 DBREF 4AIZ C 97 108 PDB 4AIZ 4AIZ 97 108 DBREF 4AIZ D 1 96 UNP Q5NV90 Q5NV90_HUMAN 1 96 DBREF 4AIZ D 97 108 PDB 4AIZ 4AIZ 97 108 SEQADV 4AIZ MET A 5 UNP Q5NV90 THR 5 CONFLICT SEQADV 4AIZ MET B 5 UNP Q5NV90 THR 5 CONFLICT SEQADV 4AIZ MET C 5 UNP Q5NV90 THR 5 CONFLICT SEQADV 4AIZ MET D 5 UNP Q5NV90 THR 5 CONFLICT SEQRES 1 A 108 SER TYR GLU LEU MET GLN PRO PRO SER VAL SER VAL SER SEQRES 2 A 108 PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP ALA SEQRES 3 A 108 LEU PRO LYS GLN TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 A 108 GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS ASP SER GLU SEQRES 5 A 108 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SER SEQRES 6 A 108 SER GLY THR THR VAL THR LEU THR ILE SER GLY VAL GLN SEQRES 7 A 108 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SER ALA ASP SEQRES 8 A 108 SER SER GLY THR TYR VAL VAL PHE GLY GLY GLY THR LYS SEQRES 9 A 108 LEU THR VAL LEU SEQRES 1 B 108 SER TYR GLU LEU MET GLN PRO PRO SER VAL SER VAL SER SEQRES 2 B 108 PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP ALA SEQRES 3 B 108 LEU PRO LYS GLN TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 B 108 GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS ASP SER GLU SEQRES 5 B 108 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SER SEQRES 6 B 108 SER GLY THR THR VAL THR LEU THR ILE SER GLY VAL GLN SEQRES 7 B 108 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SER ALA ASP SEQRES 8 B 108 SER SER GLY THR TYR VAL VAL PHE GLY GLY GLY THR LYS SEQRES 9 B 108 LEU VAL VAL LEU SEQRES 1 C 108 SER TYR GLU LEU MET GLN PRO PRO SER VAL SER VAL SER SEQRES 2 C 108 PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP ALA SEQRES 3 C 108 LEU PRO LYS GLN TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 C 108 GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS ASP SER GLU SEQRES 5 C 108 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SER SEQRES 6 C 108 SER GLY THR THR VAL THR LEU THR ILE SER GLY VAL GLN SEQRES 7 C 108 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SER ALA ASP SEQRES 8 C 108 SER SER GLY THR TYR VAL VAL PHE GLY GLY GLY THR LYS SEQRES 9 C 108 LEU THR VAL LEU SEQRES 1 D 108 SER TYR GLU LEU MET GLN PRO PRO SER VAL SER VAL SER SEQRES 2 D 108 PRO GLY GLN THR ALA ARG ILE THR CYS SER GLY ASP ALA SEQRES 3 D 108 LEU PRO LYS GLN TYR ALA TYR TRP TYR GLN GLN LYS PRO SEQRES 4 D 108 GLY GLN ALA PRO VAL LEU VAL ILE TYR LYS ASP SER GLU SEQRES 5 D 108 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER SER SEQRES 6 D 108 SER GLY THR THR VAL THR LEU THR ILE SER GLY VAL GLN SEQRES 7 D 108 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLN SER ALA ASP SEQRES 8 D 108 SER SER GLY THR TYR VAL VAL PHE GLY GLY GLY THR LYS SEQRES 9 D 108 LEU THR VAL LEU HET SO4 A1109 5 HET CIT B1109 13 HET SO4 C1109 5 HET 88Q D1109 18 HETNAM SO4 SULFATE ION HETNAM CIT CITRIC ACID HETNAM 88Q 1,5:6,10-DIANHYDRO-3,4,7,8-TETRADEOXY-2,9-BIS-C- HETNAM 2 88Q (HYDROXYMETHYL)-L-MANNO-DECITOL FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 CIT C6 H8 O7 FORMUL 8 88Q C12 H22 O6 FORMUL 9 HOH *405(H2 O) HELIX 1 1 ALA A 26 GLN A 30 5 5 HELIX 2 2 GLN A 78 GLU A 82 5 5 HELIX 3 3 GLN B 78 GLU B 82 5 5 HELIX 4 4 ALA C 26 GLN C 30 5 5 HELIX 5 5 GLN C 78 GLU C 82 5 5 HELIX 6 6 GLN D 78 GLU D 82 5 5 SHEET 1 AA 4 SER A 9 VAL A 12 0 SHEET 2 AA 4 THR A 103 VAL A 107 1 O LYS A 104 N VAL A 10 SHEET 3 AA 4 ALA A 83 ALA A 90 -1 O ALA A 83 N LEU A 105 SHEET 4 AA 4 VAL A 97 PHE A 99 1 O VAL A 98 N SER A 89 SHEET 1 AB 5 SER A 9 VAL A 12 0 SHEET 2 AB 5 THR A 103 VAL A 107 1 O LYS A 104 N VAL A 10 SHEET 3 AB 5 ALA A 83 ALA A 90 -1 O ALA A 83 N LEU A 105 SHEET 4 AB 5 TYR A 33 GLN A 37 -1 O TYR A 33 N GLN A 88 SHEET 5 AB 5 VAL A 44 ILE A 47 -1 O VAL A 44 N GLN A 36 SHEET 1 AC 2 VAL A 97 PHE A 99 0 SHEET 2 AC 2 ALA A 83 ALA A 90 1 O SER A 89 N VAL A 98 SHEET 1 AD 3 ALA A 18 SER A 23 0 SHEET 2 AD 3 THR A 69 ILE A 74 -1 O VAL A 70 N CYS A 22 SHEET 3 AD 3 PHE A 61 SER A 66 -1 O SER A 62 N THR A 73 SHEET 1 BA 4 SER B 9 VAL B 12 0 SHEET 2 BA 4 THR B 103 VAL B 107 1 O LYS B 104 N VAL B 10 SHEET 3 BA 4 ALA B 83 ALA B 90 -1 O ALA B 83 N LEU B 105 SHEET 4 BA 4 VAL B 97 PHE B 99 1 O VAL B 98 N SER B 89 SHEET 1 BB 5 SER B 9 VAL B 12 0 SHEET 2 BB 5 THR B 103 VAL B 107 1 O LYS B 104 N VAL B 10 SHEET 3 BB 5 ALA B 83 ALA B 90 -1 O ALA B 83 N LEU B 105 SHEET 4 BB 5 TYR B 33 GLN B 37 -1 O TYR B 33 N GLN B 88 SHEET 5 BB 5 VAL B 44 ILE B 47 -1 O VAL B 44 N GLN B 36 SHEET 1 BC 2 VAL B 97 PHE B 99 0 SHEET 2 BC 2 ALA B 83 ALA B 90 1 O SER B 89 N VAL B 98 SHEET 1 BD 3 ALA B 18 SER B 23 0 SHEET 2 BD 3 THR B 69 ILE B 74 -1 O VAL B 70 N CYS B 22 SHEET 3 BD 3 PHE B 61 SER B 66 -1 O SER B 62 N THR B 73 SHEET 1 CA 4 SER C 9 VAL C 12 0 SHEET 2 CA 4 THR C 103 VAL C 107 1 O LYS C 104 N VAL C 10 SHEET 3 CA 4 ALA C 83 ALA C 90 -1 O ALA C 83 N LEU C 105 SHEET 4 CA 4 VAL C 97 PHE C 99 1 O VAL C 98 N SER C 89 SHEET 1 CB 5 SER C 9 VAL C 12 0 SHEET 2 CB 5 THR C 103 VAL C 107 1 O LYS C 104 N VAL C 10 SHEET 3 CB 5 ALA C 83 ALA C 90 -1 O ALA C 83 N LEU C 105 SHEET 4 CB 5 TYR C 33 GLN C 37 -1 O TYR C 33 N GLN C 88 SHEET 5 CB 5 VAL C 44 ILE C 47 -1 O VAL C 44 N GLN C 36 SHEET 1 CC 2 VAL C 97 PHE C 99 0 SHEET 2 CC 2 ALA C 83 ALA C 90 1 O SER C 89 N VAL C 98 SHEET 1 CD 3 ALA C 18 SER C 23 0 SHEET 2 CD 3 THR C 69 ILE C 74 -1 O VAL C 70 N CYS C 22 SHEET 3 CD 3 PHE C 61 SER C 66 -1 O SER C 62 N THR C 73 SHEET 1 DA 4 SER D 9 VAL D 12 0 SHEET 2 DA 4 THR D 103 VAL D 107 1 O LYS D 104 N VAL D 10 SHEET 3 DA 4 ALA D 83 ALA D 90 -1 O ALA D 83 N LEU D 105 SHEET 4 DA 4 VAL D 97 PHE D 99 1 O VAL D 98 N SER D 89 SHEET 1 DB 5 SER D 9 VAL D 12 0 SHEET 2 DB 5 THR D 103 VAL D 107 1 O LYS D 104 N VAL D 10 SHEET 3 DB 5 ALA D 83 ALA D 90 -1 O ALA D 83 N LEU D 105 SHEET 4 DB 5 TYR D 33 GLN D 37 -1 O TYR D 33 N GLN D 88 SHEET 5 DB 5 VAL D 44 ILE D 47 -1 O VAL D 44 N GLN D 36 SHEET 1 DC 2 VAL D 97 PHE D 99 0 SHEET 2 DC 2 ALA D 83 ALA D 90 1 O SER D 89 N VAL D 98 SHEET 1 DD 3 ALA D 18 SER D 23 0 SHEET 2 DD 3 THR D 69 ILE D 74 -1 O VAL D 70 N CYS D 22 SHEET 3 DD 3 PHE D 61 SER D 66 -1 O SER D 62 N THR D 73 SSBOND 1 CYS A 22 CYS A 87 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 87 1555 1555 2.03 SSBOND 3 CYS C 22 CYS C 87 1555 1555 2.03 SSBOND 4 CYS D 22 CYS D 87 1555 1555 2.02 SITE 1 AC1 2 GLN A 36 LYS A 38 SITE 1 AC2 12 VAL A 97 HOH A2102 GLN B 36 LYS B 38 SITE 2 AC2 12 VAL B 46 ILE B 57 PRO B 58 PHE B 61 SITE 3 AC2 12 GLU B 80 ASP B 81 HOH B2041 HOH B2099 SITE 1 AC3 3 GLN C 36 LYS C 38 HOH C2112 SITE 1 AC4 18 GLN A 37 PRO A 43 TYR A 86 GLN B 37 SITE 2 AC4 18 LYS B 38 PRO B 39 GLY B 40 GLN B 41 SITE 3 AC4 18 PRO B 43 GLN C 37 PRO C 43 TYR C 86 SITE 4 AC4 18 GLN D 37 LYS D 38 PRO D 39 GLY D 40 SITE 5 AC4 18 GLN D 41 PRO D 43 CRYST1 89.402 40.946 106.726 90.00 90.15 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011185 0.000000 0.000029 0.00000 SCALE2 0.000000 0.024422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009370 0.00000