HEADER OXIDOREDUCTASE 16-FEB-12 4AJ8 TITLE CRYSTALLOGRAPHIC STRUCTURE OF THIOREDOXIN FROM LITOPENAEUS VANNAMEI TITLE 2 (PARTIALLY REDUCED). COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 3 ORGANISM_COMMON: WHITELEG SHRIMP; SOURCE 4 ORGANISM_TAXID: 6689; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11A KEYWDS OXIDOREDUCTASE, DISULFIDE REDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.A.CAMPOS-ACEVEDO,R.R.SOTELO-MUNDO,E.RUDINO-PINERA REVDAT 4 20-DEC-23 4AJ8 1 REMARK REVDAT 3 05-JUN-13 4AJ8 1 JRNL REVDAT 2 15-MAY-13 4AJ8 1 JRNL REVDAT 1 06-MAR-13 4AJ8 0 JRNL AUTH A.A.CAMPOS-ACEVEDO,K.D.GARCIA-OROZCO,R.R.SOTELO-MUNDO, JRNL AUTH 2 E.RUDINO-PINERA JRNL TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC STUDIES OF DIFFERENT REDOX STATES OF THE JRNL TITL 3 ACTIVE SITE OF THIOREDOXIN 1 FROM THE WHITELEG SHRIMP JRNL TITL 4 LITOPENAEUS VANNAMEI JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 488 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23695560 JRNL DOI 10.1107/S1744309113010622 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.2204 - 3.5215 1.00 2759 136 0.1623 0.2003 REMARK 3 2 3.5215 - 2.7966 1.00 2668 148 0.1716 0.1949 REMARK 3 3 2.7966 - 2.4435 1.00 2668 142 0.1831 0.2318 REMARK 3 4 2.4435 - 2.2203 1.00 2621 153 0.1727 0.2052 REMARK 3 5 2.2203 - 2.0613 1.00 2651 127 0.1788 0.2093 REMARK 3 6 2.0613 - 1.9398 1.00 2623 165 0.1809 0.2229 REMARK 3 7 1.9398 - 1.8427 1.00 2615 150 0.1919 0.2473 REMARK 3 8 1.8427 - 1.7625 1.00 2658 143 0.1982 0.2633 REMARK 3 9 1.7625 - 1.6947 1.00 2610 123 0.1986 0.2070 REMARK 3 10 1.6947 - 1.6362 1.00 2611 140 0.2113 0.2354 REMARK 3 11 1.6362 - 1.5851 1.00 2611 144 0.2101 0.2515 REMARK 3 12 1.5851 - 1.5398 0.98 2579 121 0.2279 0.2909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 48.17 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : 0.36000 REMARK 3 B33 (A**2) : -0.71990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.027 1971 REMARK 3 ANGLE : 2.353 2664 REMARK 3 CHIRALITY : 0.156 286 REMARK 3 PLANARITY : 0.012 357 REMARK 3 DIHEDRAL : 14.615 772 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051301. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV PLUS PLUS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33397 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 24.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ZZX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SUPHATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.67733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.33867 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 39.33867 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.67733 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2026 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2054 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2029 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 84 O HOH B 2068 2.12 REMARK 500 OD1 ASP A 60 OD1 ASP B 60 2.18 REMARK 500 O HOH A 2045 O HOH A 2090 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2043 O HOH B 2043 6555 1.84 REMARK 500 O HOH A 2080 O HOH B 2079 5554 1.85 REMARK 500 O HOH A 2030 O HOH A 2031 4554 1.95 REMARK 500 O HOH A 2092 O HOH B 2065 6545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 28 CG TYR A 28 CD2 0.085 REMARK 500 PHE B 54 CZ PHE B 54 CE2 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 28 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 60 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 92 55.57 -93.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2040 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1110 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZZX RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF THIOREDOXIN FROM LITOPENAEUS VANNAMEI REMARK 900 RELATED ID: 4AJ6 RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF THIOREDOXIN FROM LITOPENAEUS VANNAMEI REMARK 900 (REDUCE FORM). REMARK 900 RELATED ID: 4AJ7 RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF THIOREDOXIN FROM LITOPENAEUS VANNAMEI REMARK 900 (OXIDIZED FORM). REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SERINE IS PRESENT IN RESIDUE 11 FROM UNIPROT DEPOSIT REMARK 999 B1PWB9, IN OUR STRUCTURE RESIDUE 11 IS A PHENYLALANINE. DBREF 4AJ8 A 1 105 UNP B1PWB9 B1PWB9_LITVA 1 105 DBREF 4AJ8 B 1 105 UNP B1PWB9 B1PWB9_LITVA 1 105 SEQADV 4AJ8 PHE A 11 UNP B1PWB9 SER 11 CONFLICT SEQADV 4AJ8 PHE B 11 UNP B1PWB9 SER 11 CONFLICT SEQRES 1 A 105 MET VAL TYR GLN VAL LYS ASP GLN GLU ASP PHE THR LYS SEQRES 2 A 105 GLN LEU ASN GLU ALA GLY ASN LYS LEU VAL VAL ILE ASP SEQRES 3 A 105 PHE TYR ALA THR TRP CYS GLY PRO CYS LYS MET ILE ALA SEQRES 4 A 105 PRO LYS LEU GLU GLU LEU SER GLN SER MET SER ASP VAL SEQRES 5 A 105 VAL PHE LEU LYS VAL ASP VAL ASP GLU CYS GLU ASP ILE SEQRES 6 A 105 ALA GLN ASP ASN GLN ILE ALA CYS MET PRO THR PHE LEU SEQRES 7 A 105 PHE MET LYS ASN GLY GLN LYS LEU ASP SER LEU SER GLY SEQRES 8 A 105 ALA ASN TYR ASP LYS LEU LEU GLU LEU VAL GLU LYS ASN SEQRES 9 A 105 LYS SEQRES 1 B 105 MET VAL TYR GLN VAL LYS ASP GLN GLU ASP PHE THR LYS SEQRES 2 B 105 GLN LEU ASN GLU ALA GLY ASN LYS LEU VAL VAL ILE ASP SEQRES 3 B 105 PHE TYR ALA THR TRP CYS GLY PRO CYS LYS MET ILE ALA SEQRES 4 B 105 PRO LYS LEU GLU GLU LEU SER GLN SER MET SER ASP VAL SEQRES 5 B 105 VAL PHE LEU LYS VAL ASP VAL ASP GLU CYS GLU ASP ILE SEQRES 6 B 105 ALA GLN ASP ASN GLN ILE ALA CYS MET PRO THR PHE LEU SEQRES 7 B 105 PHE MET LYS ASN GLY GLN LYS LEU ASP SER LEU SER GLY SEQRES 8 B 105 ALA ASN TYR ASP LYS LEU LEU GLU LEU VAL GLU LYS ASN SEQRES 9 B 105 LYS HET GOL A1106 6 HET ACT A1107 4 HET ACT A1108 4 HET ACT A1109 4 HET ACT A1110 4 HET SO4 B1106 5 HET GOL B1107 6 HET GOL B1108 6 HET ACT B1109 4 HET GOL B1110 6 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 4 ACT 5(C2 H3 O2 1-) FORMUL 8 SO4 O4 S 2- FORMUL 13 HOH *190(H2 O) HELIX 1 1 ASP A 7 ALA A 18 1 12 HELIX 2 2 CYS A 32 MET A 49 1 18 HELIX 3 3 CYS A 62 ASN A 69 1 8 HELIX 4 4 ASN A 93 LYS A 105 1 13 HELIX 5 5 ASP B 7 ALA B 18 1 12 HELIX 6 6 CYS B 32 MET B 49 1 18 HELIX 7 7 CYS B 62 ASN B 69 1 8 HELIX 8 8 ASN B 93 LYS B 105 1 13 SHEET 1 AA 5 TYR A 3 GLN A 4 0 SHEET 2 AA 5 VAL A 52 ASP A 58 1 O PHE A 54 N TYR A 3 SHEET 3 AA 5 LEU A 22 TYR A 28 1 O LEU A 22 N VAL A 53 SHEET 4 AA 5 THR A 76 LYS A 81 -1 O THR A 76 N PHE A 27 SHEET 5 AA 5 GLN A 84 SER A 90 -1 O GLN A 84 N LYS A 81 SHEET 1 BA 5 VAL B 2 GLN B 4 0 SHEET 2 BA 5 VAL B 52 ASP B 58 1 O PHE B 54 N TYR B 3 SHEET 3 BA 5 LEU B 22 TYR B 28 1 O LEU B 22 N VAL B 53 SHEET 4 BA 5 THR B 76 LYS B 81 -1 O THR B 76 N PHE B 27 SHEET 5 BA 5 GLN B 84 SER B 90 -1 O GLN B 84 N LYS B 81 SSBOND 1 CYS A 32 CYS A 35 1555 1555 2.14 SSBOND 2 CYS A 73 CYS B 73 1555 1555 2.01 SSBOND 3 CYS B 32 CYS B 35 1555 1555 2.14 CISPEP 1 MET A 74 PRO A 75 0 -14.85 CISPEP 2 MET A 74 PRO A 75 0 -0.13 CISPEP 3 MET B 74 PRO B 75 0 10.44 CISPEP 4 MET B 74 PRO B 75 0 -12.57 SITE 1 AC1 6 LYS B 13 GLU B 17 ALA B 18 GLY B 19 SITE 2 AC1 6 ASN B 20 LYS B 21 SITE 1 AC2 6 LYS A 41 GLU A 44 ASN B 16 GLY B 19 SITE 2 AC2 6 ASN B 82 HOH B2026 SITE 1 AC3 8 ASP A 26 TYR A 28 CYS A 35 ALA A 39 SITE 2 AC3 8 LYS A 56 ACT A1109 HOH A2039 HOH A2042 SITE 1 AC4 5 ASN A 69 LYS A 85 HOH A2017 HOH A2101 SITE 2 AC4 5 HOH B2051 SITE 1 AC5 8 ASN A 16 ASN A 82 GLY A 83 HOH A2019 SITE 2 AC5 8 HOH A2025 LYS B 41 GLU B 44 HOH B2045 SITE 1 AC6 6 TYR B 28 CYS B 35 ALA B 39 LYS B 56 SITE 2 AC6 6 HOH B2033 HOH B2034 SITE 1 AC7 6 LYS B 6 ASP B 7 GLU B 61 CYS B 62 SITE 2 AC7 6 ASP B 64 HOH B2057 SITE 1 AC8 4 MET A 1 GLU A 43 LYS A 56 ACT A1107 SITE 1 AC9 7 ASP A 7 GLN A 8 GLU A 9 MET B 49 SITE 2 AC9 7 ASP B 51 LYS B 105 HOH B2089 SITE 1 BC1 4 MET B 1 LYS B 36 GLN B 47 HOH B2001 CRYST1 57.523 57.523 118.016 90.00 90.00 120.00 P 32 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017384 0.010037 0.000000 0.00000 SCALE2 0.000000 0.020074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008473 0.00000