HEADER HYDROLASE 16-FEB-12 4AJD TITLE IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 FRAGMENT TITLE 2 INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3', 5'-CYCLIC COMPND 3 PHOSPHODIESTERASE 10A, PDE10; COMPND 4 CHAIN: A, D; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 439-764; COMPND 6 SYNONYM: PHOSPHODIESTERASE 10A; COMPND 7 EC: 3.1.4.17, 3.1.4.35; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.JOHANSSON,J.S.ALBERT,L.SPADOLA,T.AKERUD,E.BACK,P.HILLERTZ, AUTHOR 2 R.HORSEFELD,C.SCOTT,N.SPEAR,G.TIAN,A.TIGERSTROM,D.AHARONY, AUTHOR 3 S.GESCHWINDNER REVDAT 2 04-APR-18 4AJD 1 REMARK REVDAT 1 06-MAR-13 4AJD 0 JRNL AUTH P.JOHANSSON,J.S.ALBERT,L.SPADOLA,T.AKERUD,E.BACK,P.HILLERTZ, JRNL AUTH 2 R.HORSEFELD,C.SCOTT,N.SPEAR,G.TIAN,A.TIGERSTROM,D.AHARONY, JRNL AUTH 3 S.GESCHWINDNER JRNL TITL IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 JRNL TITL 2 FRAGMENT INHIBITORS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2888 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2550 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2735 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE : 0.2713 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -14.18690 REMARK 3 B22 (A**2) : 8.59510 REMARK 3 B33 (A**2) : 5.59180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.271 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5393 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7304 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1878 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 145 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 769 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5393 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 695 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6705 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.40 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 RESIDUE TYPES WITHOUT CCP4 ATOM TYPE IN LIBRARY=ZN MG F04. REMARK 3 NUMBER OF ATOMS WITH PROPER CCP4 ATOM TYPE=5587. NUMBER WITH REMARK 3 APPROX DEFAULT CCP4 ATOM TYPE=28. NUMBER TREATED BY BAD NON- REMARK 3 BONDED CONTACTS=4. REMARK 4 REMARK 4 4AJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051314. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38555 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 36.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-18% PEG3350, 4-10 MM TCEP, 100 MM REMARK 280 HEPES PH 7.5 AND 200MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.97500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.34000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.34000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.97500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 771 REMARK 465 ALA A 772 REMARK 465 THR A 773 REMARK 465 TRP A 774 REMARK 465 GLU D 770 REMARK 465 THR D 771 REMARK 465 ALA D 772 REMARK 465 THR D 773 REMARK 465 TRP D 774 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 760 CB OG REMARK 470 SER D 760 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 448 128.74 70.99 REMARK 500 PHE A 482 50.72 -118.88 REMARK 500 TYR A 524 -51.76 -121.91 REMARK 500 ASN A 544 29.26 -140.80 REMARK 500 ALA D 448 127.35 66.27 REMARK 500 PHE D 482 51.65 -119.31 REMARK 500 TYR D 524 -51.63 -122.60 REMARK 500 ASN D 544 28.95 -141.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2124 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A2126 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1771 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD2 REMARK 620 2 ASP A 674 OD1 171.5 REMARK 620 3 HOH A2047 O 97.8 90.7 REMARK 620 4 HOH A2065 O 89.0 91.0 82.3 REMARK 620 5 HIS A 529 NE2 84.0 97.8 85.7 165.1 REMARK 620 6 HIS A 563 NE2 83.4 88.1 178.8 97.9 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1772 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 HOH A2082 O 167.6 REMARK 620 3 HOH A2065 O 92.2 86.6 REMARK 620 4 HOH A2066 O 88.0 93.1 179.4 REMARK 620 5 HOH A2064 O 82.4 85.2 86.6 92.9 REMARK 620 6 HOH A2048 O 99.0 93.3 88.9 91.6 175.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1770 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 674 OD1 REMARK 620 2 HIS D 529 NE2 94.9 REMARK 620 3 HOH D2060 O 95.8 160.8 REMARK 620 4 HOH D2050 O 89.5 87.6 76.6 REMARK 620 5 HIS D 563 NE2 86.3 91.4 105.2 175.6 REMARK 620 6 ASP D 564 OD2 168.9 82.9 89.5 101.3 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1771 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 564 OD1 REMARK 620 2 HOH D2049 O 99.7 REMARK 620 3 HOH D2061 O 93.5 85.1 REMARK 620 4 HOH D2060 O 93.2 82.9 167.1 REMARK 620 5 HOH D2080 O 168.4 91.5 84.4 91.2 REMARK 620 6 HOH D2059 O 88.8 171.1 91.9 99.3 79.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1772 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1770 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F04 A 1773 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F04 D 1772 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LRB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 10A REMARK 900 RELATED ID: 2WEY RELATED DB: PDB REMARK 900 HUMAN PDE-PAPAVERINE COMPLEX OBTAINED BY LIGAND SOAKING OF CROSS- REMARK 900 LINKED PROTEIN CRYSTALS REMARK 900 RELATED ID: 2Y0J RELATED DB: PDB REMARK 900 TRIAZOLOQUINAZOLINES AS A NOVEL CLASS OF PHOSPHODIESTERASE 10A REMARK 900 (PDE10A) INHIBITORS, PART 2, LEAD-OPTIMISATION. REMARK 900 RELATED ID: 4AEL RELATED DB: PDB REMARK 900 PDE10A IN COMPLEX WITH THE INHIBITOR AZ5 REMARK 900 RELATED ID: 4AJF RELATED DB: PDB REMARK 900 IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 FRAGMENT REMARK 900 INHIBITORS REMARK 900 RELATED ID: 4AJG RELATED DB: PDB REMARK 900 IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF PDE10 FRAGMENT REMARK 900 INHIBITORS REMARK 900 RELATED ID: 4AJM RELATED DB: PDB REMARK 900 DEVELOPMENT OF A PLATE-BASED OPTICAL BIOSENSOR METHODOLOGY TO REMARK 900 IDENTIFY PDE10 FRAGMENT INHIBITORS DBREF 4AJD A 449 774 UNP Q9Y233 PDE10_HUMAN 439 764 DBREF 4AJD D 449 774 UNP Q9Y233 PDE10_HUMAN 439 764 SEQADV 4AJD ASN A 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4AJD ALA A 448 UNP Q9Y233 EXPRESSION TAG SEQADV 4AJD ASN D 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4AJD ALA D 448 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 328 ASN ALA SER ILE CYS THR SER GLU GLU TRP GLN GLY LEU SEQRES 2 A 328 MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS GLU ILE SEQRES 3 A 328 GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN MET SEQRES 4 A 328 TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SER CYS SEQRES 5 A 328 GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG PHE SEQRES 6 A 328 ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO TYR SEQRES 7 A 328 HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS MET SEQRES 8 A 328 TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE THR ASP SEQRES 9 A 328 LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS HIS SEQRES 10 A 328 ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU GLN SEQRES 11 A 328 LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SER SEQRES 12 A 328 THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER ILE SEQRES 13 A 328 LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SER SEQRES 14 A 328 SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG LYS SEQRES 15 A 328 ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY ASN SEQRES 16 A 328 ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER LEU SEQRES 17 A 328 ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL ILE GLY SEQRES 18 A 328 LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR LYS SEQRES 19 A 328 LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE TYR SEQRES 20 A 328 ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS LEU SEQRES 21 A 328 GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS LYS SEQRES 22 A 328 ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN ALA SEQRES 23 A 328 VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE LEU SEQRES 24 A 328 PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP ASN SEQRES 25 A 328 LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU THR SEQRES 26 A 328 ALA THR TRP SEQRES 1 D 328 ASN ALA SER ILE CYS THR SER GLU GLU TRP GLN GLY LEU SEQRES 2 D 328 MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS GLU ILE SEQRES 3 D 328 GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN MET SEQRES 4 D 328 TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SER CYS SEQRES 5 D 328 GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG PHE SEQRES 6 D 328 ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO TYR SEQRES 7 D 328 HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS MET SEQRES 8 D 328 TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE THR ASP SEQRES 9 D 328 LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS HIS SEQRES 10 D 328 ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU GLN SEQRES 11 D 328 LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SER SEQRES 12 D 328 THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER ILE SEQRES 13 D 328 LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SER SEQRES 14 D 328 SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG LYS SEQRES 15 D 328 ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY ASN SEQRES 16 D 328 ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER LEU SEQRES 17 D 328 ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL ILE GLY SEQRES 18 D 328 LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR LYS SEQRES 19 D 328 LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE TYR SEQRES 20 D 328 ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS LEU SEQRES 21 D 328 GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS LYS SEQRES 22 D 328 ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN ALA SEQRES 23 D 328 VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE LEU SEQRES 24 D 328 PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP ASN SEQRES 25 D 328 LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU THR SEQRES 26 D 328 ALA THR TRP HET ZN A1771 1 HET MG A1772 1 HET F04 A1773 14 HET ZN D1770 1 HET MG D1771 1 HET F04 D1772 14 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM F04 2-ETHYL-4-METHYL-PHTHALAZIN-1-ONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 F04 2(C11 H12 N2 O) FORMUL 9 HOH *352(H2 O) HELIX 1 1 THR A 452 GLN A 461 1 10 HELIX 2 2 PRO A 465 ILE A 472 1 8 HELIX 3 3 PHE A 482 ASN A 484 5 3 HELIX 4 4 MET A 485 GLY A 499 1 15 HELIX 5 5 GLU A 504 ASN A 518 1 15 HELIX 6 6 ASN A 526 ASN A 543 1 18 HELIX 7 7 ASN A 544 PHE A 548 5 5 HELIX 8 8 THR A 549 HIS A 563 1 15 HELIX 9 9 SER A 571 PHE A 578 1 8 HELIX 10 10 HIS A 580 TYR A 586 1 7 HELIX 11 11 SER A 589 GLN A 604 1 16 HELIX 12 12 SER A 615 THR A 633 1 19 HELIX 13 13 ASP A 634 THR A 651 1 18 HELIX 14 14 ASN A 658 LEU A 675 1 18 HELIX 15 15 CYS A 676 LYS A 680 5 5 HELIX 16 16 LEU A 681 LEU A 706 1 26 HELIX 17 17 ILE A 711 ASP A 715 5 5 HELIX 18 18 ASP A 715 ASP A 720 5 6 HELIX 19 19 GLU A 721 VAL A 733 1 13 HELIX 20 20 VAL A 733 LEU A 745 1 13 HELIX 21 21 THR A 748 ARG A 767 1 20 HELIX 22 22 THR D 452 GLN D 461 1 10 HELIX 23 23 PRO D 465 LYS D 470 1 6 HELIX 24 24 PHE D 482 ASN D 484 5 3 HELIX 25 25 MET D 485 GLY D 499 1 15 HELIX 26 26 GLU D 504 ASN D 518 1 15 HELIX 27 27 ASN D 526 ASN D 543 1 18 HELIX 28 28 ASN D 544 PHE D 548 5 5 HELIX 29 29 THR D 549 HIS D 563 1 15 HELIX 30 30 SER D 571 PHE D 578 1 8 HELIX 31 31 HIS D 580 TYR D 586 1 7 HELIX 32 32 SER D 589 GLN D 604 1 16 HELIX 33 33 SER D 615 THR D 633 1 19 HELIX 34 34 ASP D 634 THR D 651 1 18 HELIX 35 35 ASN D 658 LEU D 675 1 18 HELIX 36 36 CYS D 676 LYS D 680 5 5 HELIX 37 37 LEU D 681 LEU D 706 1 26 HELIX 38 38 ILE D 711 ASP D 715 5 5 HELIX 39 39 ASP D 715 ASP D 720 5 6 HELIX 40 40 GLU D 721 VAL D 733 1 13 HELIX 41 41 VAL D 733 LEU D 745 1 13 HELIX 42 42 THR D 748 GLY D 768 1 21 LINK ZN ZN A1771 OD2 ASP A 564 1555 1555 2.16 LINK ZN ZN A1771 OD1 ASP A 674 1555 1555 2.05 LINK ZN ZN A1771 O HOH A2047 1555 1555 2.49 LINK ZN ZN A1771 O HOH A2065 1555 1555 2.19 LINK ZN ZN A1771 NE2 HIS A 529 1555 1555 2.07 LINK ZN ZN A1771 NE2 HIS A 563 1555 1555 2.09 LINK MG MG A1772 OD1 ASP A 564 1555 1555 2.09 LINK MG MG A1772 O HOH A2082 1555 1555 2.14 LINK MG MG A1772 O HOH A2065 1555 1555 2.18 LINK MG MG A1772 O HOH A2066 1555 1555 1.94 LINK MG MG A1772 O HOH A2064 1555 1555 2.19 LINK MG MG A1772 O HOH A2048 1555 1555 2.15 LINK ZN ZN D1770 OD1 ASP D 674 1555 1555 2.05 LINK ZN ZN D1770 NE2 HIS D 529 1555 1555 2.15 LINK ZN ZN D1770 O HOH D2060 1555 1555 1.96 LINK ZN ZN D1770 O HOH D2050 1555 1555 2.44 LINK ZN ZN D1770 NE2 HIS D 563 1555 1555 2.14 LINK ZN ZN D1770 OD2 ASP D 564 1555 1555 2.13 LINK MG MG D1771 OD1 ASP D 564 1555 1555 2.07 LINK MG MG D1771 O HOH D2049 1555 1555 2.06 LINK MG MG D1771 O HOH D2061 1555 1555 2.02 LINK MG MG D1771 O HOH D2060 1555 1555 2.09 LINK MG MG D1771 O HOH D2080 1555 1555 1.94 LINK MG MG D1771 O HOH D2059 1555 1555 2.26 SITE 1 AC1 6 HIS A 529 HIS A 563 ASP A 564 ASP A 674 SITE 2 AC1 6 HOH A2047 HOH A2065 SITE 1 AC2 6 ASP A 564 HOH A2048 HOH A2064 HOH A2065 SITE 2 AC2 6 HOH A2066 HOH A2082 SITE 1 AC3 6 HIS D 529 HIS D 563 ASP D 564 ASP D 674 SITE 2 AC3 6 HOH D2050 HOH D2060 SITE 1 AC4 6 ASP D 564 HOH D2049 HOH D2059 HOH D2060 SITE 2 AC4 6 HOH D2061 HOH D2080 SITE 1 AC5 5 ILE A 692 TYR A 693 GLN A 726 PHE A 729 SITE 2 AC5 5 HOH A2145 SITE 1 AC6 6 ILE D 692 TYR D 693 GLN D 726 PHE D 729 SITE 2 AC6 6 HOH D2045 HOH D2115 CRYST1 49.950 81.490 158.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006302 0.00000 MTRIX1 1 -0.174000 -0.943000 -0.284000 -0.04220 1 MTRIX2 1 0.981000 -0.140000 -0.135000 -0.77611 1 MTRIX3 1 0.088000 -0.302000 0.949000 0.05220 1