HEADER SUGAR BINDING PROTEIN 22-FEB-12 4AKC TITLE STRUCTURE OF GALACTOSE BINDING LECTIN FROM CHAMPEDAK (CGB) WITH TITLE 2 GAL(BETA)1,3-GALNAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ ALPHA CHAIN; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: JACALIN ALPHA CHAIN, HAMPEDAK GALACTOSE BINDING LECTIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AGGLUTININ BETA-4 CHAIN; COMPND 7 CHAIN: B, D, F, H; COMPND 8 SYNONYM: JACALIN BETA-4 CHAIN, CHAMPEDAK GALACTOSE BINDING LECTIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 3 ORGANISM_TAXID: 3490; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ARTOCARPUS INTEGER; SOURCE 6 ORGANISM_TAXID: 3490 KEYWDS SUGAR BINDING PROTEIN, MANNOSE EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,P.S.ABDUL-RAHMAN,S.OTHMAN,O.H.HASHIM,R.J.COGDELL REVDAT 5 20-DEC-23 4AKC 1 REMARK HETSYN REVDAT 4 29-JUL-20 4AKC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 18-JUN-14 4AKC 1 JRNL REVDAT 2 11-JUN-14 4AKC 1 JRNL REVDAT 1 27-FEB-13 4AKC 0 JRNL AUTH M.GABRIELSEN,P.S.ABDUL-RAHMAN,S.OTHMAN,O.H.HASHIM, JRNL AUTH 2 R.J.COGDELL JRNL TITL STRUCTURES AND BINDING SPECIFICITY OF GALACTOSE- AND JRNL TITL 2 MANNOSE-BINDING LECTINS FROM CHAMPEDAK: DIFFERENCES FROM JRNL TITL 3 JACKFRUIT LECTINS JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 70 709 2014 JRNL REFN ESSN 1744-3091 JRNL PMID 24915077 JRNL DOI 10.1107/S2053230X14008966 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1621 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2956 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2230 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2798 REMARK 3 BIN R VALUE (WORKING SET) : 0.2202 REMARK 3 BIN FREE R VALUE : 0.2724 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.35 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 158 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65290 REMARK 3 B22 (A**2) : -14.96930 REMARK 3 B33 (A**2) : 15.62220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.261 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.210 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.268 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.215 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.898 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4826 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6557 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1569 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 90 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 693 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4826 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 640 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5421 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.99 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -19.5357 11.1773 15.7627 REMARK 3 T TENSOR REMARK 3 T11: -0.1736 T22: -0.1767 REMARK 3 T33: 0.1955 T12: 0.0098 REMARK 3 T13: -0.0489 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 1.4797 L22: 3.1201 REMARK 3 L33: 1.3574 L12: -0.2144 REMARK 3 L13: -0.3595 L23: 1.0752 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.1127 S13: 0.0374 REMARK 3 S21: -0.2179 S22: -0.1548 S23: 0.6035 REMARK 3 S31: -0.0104 S32: -0.1320 S33: 0.1065 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -5.3547 13.7178 22.9378 REMARK 3 T TENSOR REMARK 3 T11: -0.0815 T22: -0.1161 REMARK 3 T33: 0.1939 T12: -0.0384 REMARK 3 T13: -0.0147 T23: -0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.1833 L22: 2.4388 REMARK 3 L33: 0.1297 L12: -0.8204 REMARK 3 L13: 0.4991 L23: 0.8651 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0519 S13: 0.0495 REMARK 3 S21: 0.1830 S22: -0.1073 S23: -0.0155 REMARK 3 S31: 0.1245 S32: 0.1033 S33: 0.1080 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 14.1901 14.6139 0.4722 REMARK 3 T TENSOR REMARK 3 T11: -0.0681 T22: -0.0964 REMARK 3 T33: 0.0077 T12: 0.0511 REMARK 3 T13: 0.1158 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 3.1239 L22: 2.0539 REMARK 3 L33: 0.6200 L12: 1.3105 REMARK 3 L13: 0.4186 L23: 0.2895 REMARK 3 S TENSOR REMARK 3 S11: -0.1081 S12: 0.7297 S13: -0.3275 REMARK 3 S21: -0.4050 S22: 0.1246 S23: -0.2724 REMARK 3 S31: 0.0308 S32: 0.1552 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 3.1040 25.8046 3.0503 REMARK 3 T TENSOR REMARK 3 T11: -0.0146 T22: -0.0637 REMARK 3 T33: 0.0623 T12: 0.1055 REMARK 3 T13: 0.0305 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 0.0144 L22: 1.4851 REMARK 3 L33: 0.5533 L12: 1.6060 REMARK 3 L13: 2.2867 L23: -0.2261 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.1561 S13: -0.0145 REMARK 3 S21: -0.2013 S22: 0.0607 S23: 0.0181 REMARK 3 S31: -0.0722 S32: 0.0138 S33: -0.0490 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -12.3068 30.7076 34.8995 REMARK 3 T TENSOR REMARK 3 T11: -0.1752 T22: -0.0797 REMARK 3 T33: 0.1783 T12: -0.0142 REMARK 3 T13: 0.0261 T23: -0.1634 REMARK 3 L TENSOR REMARK 3 L11: 0.9581 L22: 0.7842 REMARK 3 L33: 1.2206 L12: 0.4364 REMARK 3 L13: -0.3707 L23: -0.1194 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.2396 S13: 0.2902 REMARK 3 S21: -0.0024 S22: -0.0195 S23: 0.0480 REMARK 3 S31: -0.1094 S32: -0.0290 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 17.2555 39.2733 14.2420 REMARK 3 T TENSOR REMARK 3 T11: -0.1307 T22: -0.2149 REMARK 3 T33: 0.1993 T12: -0.0443 REMARK 3 T13: 0.1387 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.8555 L22: 1.7196 REMARK 3 L33: 2.4796 L12: 1.0312 REMARK 3 L13: -1.3774 L23: -0.0611 REMARK 3 S TENSOR REMARK 3 S11: 0.2682 S12: -0.1039 S13: 0.7082 REMARK 3 S21: 0.0761 S22: -0.0820 S23: 0.2146 REMARK 3 S31: -0.3077 S32: 0.3311 S33: -0.1863 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN H REMARK 3 ORIGIN FOR THE GROUP (A): 11.3910 25.0535 20.2803 REMARK 3 T TENSOR REMARK 3 T11: -0.0460 T22: -0.1255 REMARK 3 T33: 0.1549 T12: 0.0145 REMARK 3 T13: 0.0442 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 0.8393 L22: 0.0000 REMARK 3 L33: 2.5488 L12: -2.2137 REMARK 3 L13: 0.6511 L23: 2.0630 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: -0.0641 S13: 0.0915 REMARK 3 S21: -0.1907 S22: -0.1078 S23: -0.0478 REMARK 3 S31: 0.0138 S32: 0.0773 S33: 0.1207 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY REMARK 4 REMARK 4 4AKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051423. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 77.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AK4 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% PEG 600, 100 MM PHOSPHATE/CITRATE REMARK 280 BUFFER PH 4.2, PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.14350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.14350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 1 REMARK 465 GLU B 2 REMARK 465 VAL B 19 REMARK 465 SER B 20 REMARK 465 THR B 21 REMARK 465 ASN D 1 REMARK 465 GLU D 2 REMARK 465 VAL D 19 REMARK 465 SER D 20 REMARK 465 THR D 21 REMARK 465 ASN F 1 REMARK 465 GLU F 2 REMARK 465 GLN F 3 REMARK 465 GLN F 18 REMARK 465 VAL F 19 REMARK 465 SER F 20 REMARK 465 THR F 21 REMARK 465 ASN H 1 REMARK 465 GLU H 2 REMARK 465 GLN H 18 REMARK 465 VAL H 19 REMARK 465 SER H 20 REMARK 465 THR H 21 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 21 CB CG CD CE NZ REMARK 480 GLU A 22 CB CG CD OE1 OE2 REMARK 480 LYS A 74 CD CE NZ REMARK 480 LYS A 87 CG CD CE NZ REMARK 480 LYS A 90 CE NZ REMARK 480 LYS A 91 CE NZ REMARK 480 GLN B 18 CD REMARK 480 LYS C 21 CG CD CE NZ REMARK 480 GLU C 22 CB CG CD OE1 OE2 REMARK 480 LYS C 45 CE NZ REMARK 480 LYS C 74 CE NZ REMARK 480 LYS C 91 CD CE NZ REMARK 480 LYS E 2 CG CD CE NZ REMARK 480 LYS E 45 CD CE NZ REMARK 480 LYS G 21 CG CD CE NZ REMARK 480 GLU G 22 CG CD OE1 OE2 REMARK 480 GLU G 42 CD OE1 OE2 REMARK 480 LYS G 74 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 A2G I 1 O HOH A 2013 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -96.41 -113.81 REMARK 500 THR A 99 42.13 -75.95 REMARK 500 THR C 23 -96.53 -102.70 REMARK 500 ALA C 24 -159.91 -149.04 REMARK 500 THR C 49 -167.42 -110.45 REMARK 500 THR E 23 -104.29 -131.33 REMARK 500 ILE E 48 -167.44 -118.51 REMARK 500 PHE G 9 -159.92 -138.33 REMARK 500 THR G 23 -101.43 -107.15 REMARK 500 ALA G 24 -158.72 -152.67 REMARK 500 THR G 49 -162.90 -122.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AK4 RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF GALACTOSE BINDING LECTIN FROM REMARK 900 CHAMPEDAK (CGB) REMARK 900 RELATED ID: 4AKB RELATED DB: PDB REMARK 900 STRUCTURE OF GALACTOSE BINDING LECTIN FROM CHAMPEDAK ( CGB) WITH REMARK 900 GALACTOSE REMARK 900 RELATED ID: 4AKD RELATED DB: PDB REMARK 900 HIGH RESOLUTION STRUCTURE OF MANNOSE BINDING LECTIN FROM CHAMPEDAK REMARK 900 (CMB) REMARK 999 REMARK 999 SEQUENCE REMARK 999 CROSS-REFERENCE IS TO NEAREST UNIPROT BUT SEQUENCE IS REMARK 999 VARIANT WITH GENBANK REFERENCE GB FR728240. DBREF 4AKC A 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKC B 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 DBREF 4AKC C 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKC D 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 DBREF 4AKC E 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKC F 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 DBREF 4AKC G 1 133 UNP P18670 LECA_ARTIN 1 133 DBREF 4AKC H 1 19 UNP Q9S8T0 LECB4_ARTIN 1 19 SEQADV 4AKC GLU A 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKC LYS A 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKC SER A 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKC SER B 20 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC THR B 21 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC GLU C 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKC LYS C 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKC SER C 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKC SER D 20 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC THR D 21 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC GLU E 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKC LYS E 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKC SER E 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKC SER F 20 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC THR F 21 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC GLU G 42 UNP P18670 GLN 42 SEE REMARK 999 SEQADV 4AKC LYS G 74 UNP P18670 ASN 74 SEE REMARK 999 SEQADV 4AKC SER G 105 UNP P18670 ASN 105 SEE REMARK 999 SEQADV 4AKC SER H 20 UNP Q9S8T0 EXPRESSION TAG SEQADV 4AKC THR H 21 UNP Q9S8T0 EXPRESSION TAG SEQRES 1 A 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 A 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 A 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 A 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 A 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 A 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 A 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 A 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 A 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 A 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 A 133 LEU SER LEU SEQRES 1 B 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 B 21 PRO TRP GLY ALA GLN VAL SER THR SEQRES 1 C 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 C 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 C 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 C 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 C 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 C 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 C 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 C 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 C 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 C 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 C 133 LEU SER LEU SEQRES 1 D 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 D 21 PRO TRP GLY ALA GLN VAL SER THR SEQRES 1 E 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 E 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 E 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 E 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 E 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 E 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 E 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 E 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 E 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 E 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 E 133 LEU SER LEU SEQRES 1 F 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 F 21 PRO TRP GLY ALA GLN VAL SER THR SEQRES 1 G 133 GLY LYS ALA PHE ASP ASP GLY ALA PHE THR GLY ILE ARG SEQRES 2 G 133 GLU ILE ASN LEU SER TYR ASN LYS GLU THR ALA ILE GLY SEQRES 3 G 133 ASP PHE GLN VAL VAL TYR ASP LEU ASN GLY SER PRO TYR SEQRES 4 G 133 VAL GLY GLU ASN HIS LYS SER PHE ILE THR GLY PHE THR SEQRES 5 G 133 PRO VAL LYS ILE SER LEU ASP PHE PRO SER GLU TYR ILE SEQRES 6 G 133 MET GLU VAL SER GLY TYR THR GLY LYS VAL SER GLY TYR SEQRES 7 G 133 VAL VAL VAL ARG SER LEU THR PHE LYS THR ASN LYS LYS SEQRES 8 G 133 THR TYR GLY PRO TYR GLY VAL THR SER GLY THR PRO PHE SEQRES 9 G 133 SER LEU PRO ILE GLU ASN GLY LEU ILE VAL GLY PHE LYS SEQRES 10 G 133 GLY SER ILE GLY TYR TRP LEU ASP TYR PHE SER MET TYR SEQRES 11 G 133 LEU SER LEU SEQRES 1 H 21 ASN GLU GLN SER GLY ILE SER GLN THR VAL ILE VAL GLY SEQRES 2 H 21 PRO TRP GLY ALA GLN VAL SER THR HET A2G I 1 15 HET GAL I 2 11 HET A2G J 1 15 HET GAL J 2 11 HET A2G K 1 15 HET GAL K 2 11 HET A2G L 1 15 HET GAL L 2 11 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 9 A2G 4(C8 H15 N O6) FORMUL 9 GAL 4(C6 H12 O6) FORMUL 13 HOH *51(H2 O) SHEET 1 AA 8 LYS A 2 ASP A 5 0 SHEET 2 AA 8 LEU A 112 ILE A 120 -1 O GLY A 118 N PHE A 4 SHEET 3 AA 8 LEU A 124 SER A 132 -1 N ASP A 125 O SER A 119 SHEET 4 AA 8 VAL B 10 GLY B 16 -1 O VAL B 10 N LEU A 131 SHEET 5 AA 8 THR E 102 ASN E 110 -1 O PRO E 107 N GLY B 13 SHEET 6 AA 8 ILE E 65 VAL E 75 -1 O MET E 66 N ILE E 108 SHEET 7 AA 8 TYR E 78 THR E 88 -1 O TYR E 78 N VAL E 75 SHEET 8 AA 8 THR E 92 TYR E 96 -1 O TYR E 93 N PHE E 86 SHEET 1 AB 4 PRO A 38 VAL A 40 0 SHEET 2 AB 4 ILE A 25 ASP A 33 -1 O TYR A 32 N TYR A 39 SHEET 3 AB 4 GLY A 11 TYR A 19 -1 O GLY A 11 N ASP A 33 SHEET 4 AB 4 THR A 52 SER A 57 -1 O THR A 52 N TYR A 19 SHEET 1 AC 8 THR A 92 GLY A 97 0 SHEET 2 AC 8 TYR A 78 THR A 88 -1 O LEU A 84 N TYR A 96 SHEET 3 AC 8 ILE A 65 VAL A 75 -1 N MET A 66 O LYS A 87 SHEET 4 AC 8 THR A 102 ASN A 110 -1 O THR A 102 N THR A 72 SHEET 5 AC 8 VAL F 10 GLY F 16 -1 O ILE F 11 N ASN A 110 SHEET 6 AC 8 LEU E 124 SER E 132 -1 O PHE E 127 N TRP F 15 SHEET 7 AC 8 LEU E 112 ILE E 120 -1 O LEU E 112 N SER E 132 SHEET 8 AC 8 LYS E 2 ASP E 5 -1 O LYS E 2 N ILE E 120 SHEET 1 CA 8 LYS C 2 ASP C 5 0 SHEET 2 CA 8 LEU C 112 ILE C 120 -1 O GLY C 118 N PHE C 4 SHEET 3 CA 8 LEU C 124 SER C 132 -1 N ASP C 125 O SER C 119 SHEET 4 CA 8 VAL D 10 GLY D 16 -1 O VAL D 10 N LEU C 131 SHEET 5 CA 8 THR G 102 ASN G 110 -1 O PRO G 107 N GLY D 13 SHEET 6 CA 8 ILE G 65 VAL G 75 -1 O MET G 66 N ILE G 108 SHEET 7 CA 8 TYR G 78 THR G 88 -1 O TYR G 78 N VAL G 75 SHEET 8 CA 8 THR G 92 GLY G 97 -1 O TYR G 93 N PHE G 86 SHEET 1 CB 4 SER C 37 VAL C 40 0 SHEET 2 CB 4 ILE C 25 LEU C 34 -1 O TYR C 32 N TYR C 39 SHEET 3 CB 4 GLY C 11 TYR C 19 -1 O GLY C 11 N ASP C 33 SHEET 4 CB 4 THR C 52 SER C 57 -1 O THR C 52 N TYR C 19 SHEET 1 CC 8 THR C 92 GLY C 97 0 SHEET 2 CC 8 TYR C 78 THR C 88 -1 O LEU C 84 N TYR C 96 SHEET 3 CC 8 ILE C 65 VAL C 75 -1 N MET C 66 O LYS C 87 SHEET 4 CC 8 THR C 102 ASN C 110 -1 O THR C 102 N THR C 72 SHEET 5 CC 8 VAL H 10 GLY H 16 -1 O ILE H 11 N GLU C 109 SHEET 6 CC 8 LEU G 124 SER G 132 -1 O PHE G 127 N TRP H 15 SHEET 7 CC 8 LEU G 112 ILE G 120 -1 O LEU G 112 N SER G 132 SHEET 8 CC 8 LYS G 2 ASP G 5 -1 O LYS G 2 N ILE G 120 SHEET 1 EA 4 SER E 37 VAL E 40 0 SHEET 2 EA 4 ILE E 25 LEU E 34 -1 O TYR E 32 N TYR E 39 SHEET 3 EA 4 GLY E 11 TYR E 19 -1 O GLY E 11 N ASP E 33 SHEET 4 EA 4 THR E 52 SER E 57 -1 O THR E 52 N TYR E 19 SHEET 1 GA 4 SER G 37 VAL G 40 0 SHEET 2 GA 4 ILE G 25 LEU G 34 -1 O TYR G 32 N TYR G 39 SHEET 3 GA 4 GLY G 11 TYR G 19 -1 O GLY G 11 N ASP G 33 SHEET 4 GA 4 THR G 52 SER G 57 -1 O THR G 52 N TYR G 19 LINK O3 A2G I 1 C1 GAL I 2 1555 1555 1.40 LINK O3 A2G J 1 C1 GAL J 2 1555 1555 1.41 LINK O3 A2G K 1 C1 GAL K 2 1555 1555 1.41 LINK O3 A2G L 1 C1 GAL L 2 1555 1555 1.41 CISPEP 1 PHE A 60 PRO A 61 0 -0.56 CISPEP 2 GLY A 94 PRO A 95 0 0.91 CISPEP 3 GLY B 13 PRO B 14 0 -0.81 CISPEP 4 PHE C 60 PRO C 61 0 5.04 CISPEP 5 GLY C 94 PRO C 95 0 0.64 CISPEP 6 GLY D 13 PRO D 14 0 2.72 CISPEP 7 PHE E 60 PRO E 61 0 9.66 CISPEP 8 GLY E 94 PRO E 95 0 2.44 CISPEP 9 GLY F 13 PRO F 14 0 3.20 CISPEP 10 PHE G 60 PRO G 61 0 -0.68 CISPEP 11 GLY G 94 PRO G 95 0 3.72 CISPEP 12 GLY H 13 PRO H 14 0 1.24 CRYST1 76.287 121.673 77.563 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013108 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012893 0.00000