HEADER TRANSFERASE 22-FEB-12 4AKF TITLE CRYSTAL STRUCTURE OF VIPD FROM LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIPD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-575; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 STRAIN: PHILADELPHIA-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.-H.LEE,B.KU,B.-H.OH REVDAT 3 25-MAR-15 4AKF 1 JRNL REVDAT 2 09-JAN-13 4AKF 1 JRNL REVDAT 1 26-DEC-12 4AKF 0 JRNL AUTH B.KU,K.-H.LEE,W.S.PARK,C.-S.YANG,J.GE,S.-G.LEE,S.-S.CHA, JRNL AUTH 2 F.SHAOW,D.HEO,J.U.JUMG,B.-H.OH JRNL TITL VIPD OF LEGIONELLA PNEUMOPHILA TARGETS ACTIVATED RAB5 AND JRNL TITL 2 RAB22 TO INTERFERE WITH ENDOSOMAL TRAFFICKING IN JRNL TITL 3 MACROPHAGES JRNL REF PLOS PATHOG. V. 8 3082 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 23271971 JRNL DOI 10.1371/JOURNAL.PPAT.1003082 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.9 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.2144 REMARK 3 FREE R VALUE : 0.2333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.000 REMARK 3 B22 (A**2) : 0.000 REMARK 3 B33 (A**2) : 0.000 REMARK 3 B12 (A**2) : 0.000 REMARK 3 B13 (A**2) : 0.000 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.0083 REMARK 3 BOND ANGLES (DEGREES) : 1.3266 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : N/A REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.38 ; 1.5 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.49 ; 2.0 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.81 ; 2.0 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.98 ; 2.5 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.3 REMARK 3 BSOL : 27.0427 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GOL_XPLOR_PAR REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-12. REMARK 100 THE PDBE ID CODE IS EBI-51418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 210) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34134 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.80 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.5 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM REMARK 280 100 MM TRIS-HCL (PH 8.0), 1.0 M AMMONIUM CITRATE TRIBASIC REMARK 280 (PH 7.0) AND 10 MM MGCL2. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 27555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 28555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 31555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 32555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 35555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 36555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 37555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 38555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 39555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 40555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 41555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 42555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 43555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 44555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 45555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 46555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 47555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 48555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 126.37850 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 126.37850 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 126.37850 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 126.37850 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 126.37850 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 126.37850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -126.37850 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -379.13550 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 -126.37850 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2013 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 560 REMARK 465 GLN A 561 REMARK 465 PRO A 562 REMARK 465 GLU A 563 REMARK 465 PRO A 564 REMARK 465 VAL A 565 REMARK 465 LYS A 566 REMARK 465 VAL A 567 REMARK 465 SER A 568 REMARK 465 THR A 569 REMARK 465 SER A 570 REMARK 465 GLU A 571 REMARK 465 ASN A 572 REMARK 465 GLN A 573 REMARK 465 GLU A 574 REMARK 465 THR A 575 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 559 CA C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 125.30 -34.87 REMARK 500 SER A 73 -141.79 53.89 REMARK 500 VAL A 84 21.22 -78.13 REMARK 500 LEU A 94 -70.33 -70.61 REMARK 500 ASP A 105 163.83 -47.02 REMARK 500 PRO A 140 -81.67 -45.06 REMARK 500 ILE A 141 83.12 62.24 REMARK 500 PRO A 142 -80.35 -102.40 REMARK 500 PRO A 143 -149.53 -51.13 REMARK 500 GLU A 144 8.87 -61.99 REMARK 500 GLU A 228 -5.26 -58.97 REMARK 500 ASP A 288 124.87 -36.23 REMARK 500 ASP A 340 -9.42 -57.36 REMARK 500 ILE A 347 -71.13 -84.77 REMARK 500 ALA A 354 -156.44 -83.61 REMARK 500 ASN A 360 7.81 -65.23 REMARK 500 THR A 384 -3.68 -146.34 REMARK 500 PRO A 386 43.34 -81.30 REMARK 500 GLU A 389 -72.01 -86.19 REMARK 500 VAL A 483 -70.26 -72.57 REMARK 500 LYS A 486 70.12 58.35 REMARK 500 LYS A 557 -77.97 -101.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 299 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2086 DISTANCE = 7.11 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. DBREF 4AKF A 1 575 UNP Q5ZRP9 Q5ZRP9_LEGPH 1 575 SEQADV 4AKF GLY A -1 UNP Q5ZRP9 EXPRESSION TAG SEQADV 4AKF SER A 0 UNP Q5ZRP9 EXPRESSION TAG SEQRES 1 A 577 GLY SER MET LYS LEU ALA GLU ILE MET THR LYS SER ARG SEQRES 2 A 577 LYS LEU LYS ARG ASN LEU LEU GLU ILE SER LYS THR GLU SEQRES 3 A 577 ALA GLY GLN TYR SER VAL SER ALA PRO GLU HIS LYS GLY SEQRES 4 A 577 LEU VAL LEU SER GLY GLY GLY ALA LYS GLY ILE SER TYR SEQRES 5 A 577 LEU GLY MET ILE GLN ALA LEU GLN GLU ARG GLY LYS ILE SEQRES 6 A 577 LYS ASN LEU THR HIS VAL SER GLY ALA SER ALA GLY ALA SEQRES 7 A 577 MET THR ALA SER ILE LEU ALA VAL GLY MET ASP ILE LYS SEQRES 8 A 577 ASP ILE LYS LYS LEU ILE GLU GLY LEU ASP ILE THR LYS SEQRES 9 A 577 LEU LEU ASP ASN SER GLY VAL GLY PHE ARG ALA ARG GLY SEQRES 10 A 577 ASP ARG PHE ARG ASN ILE LEU ASP VAL ILE TYR MET MET SEQRES 11 A 577 GLN MET LYS LYS HIS LEU GLU SER VAL GLN GLN PRO ILE SEQRES 12 A 577 PRO PRO GLU GLN GLN MET ASN TYR GLY ILE LEU LYS GLN SEQRES 13 A 577 LYS ILE ALA LEU TYR GLU ASP LYS LEU SER ARG ALA GLY SEQRES 14 A 577 ILE VAL ILE ASN ASN VAL ASP ASP ILE ILE ASN LEU THR SEQRES 15 A 577 LYS SER VAL LYS ASP LEU GLU LYS LEU ASP LYS ALA LEU SEQRES 16 A 577 ASN SER ILE PRO THR GLU LEU LYS GLY ALA LYS GLY GLU SEQRES 17 A 577 GLN LEU GLU ASN PRO ARG LEU THR LEU GLY ASP LEU GLY SEQRES 18 A 577 ARG LEU ARG GLU LEU LEU PRO GLU GLU ASN LYS HIS LEU SEQRES 19 A 577 ILE LYS ASN LEU SER VAL VAL VAL THR ASN GLN THR LYS SEQRES 20 A 577 HIS GLU LEU GLU ARG TYR SER GLU ASP THR THR PRO GLN SEQRES 21 A 577 GLN SER ILE ALA GLN VAL VAL GLN TRP SER GLY ALA HIS SEQRES 22 A 577 PRO VAL LEU PHE VAL PRO GLY ARG ASN ALA LYS GLY GLU SEQRES 23 A 577 TYR ILE ALA ASP GLY GLY ILE LEU ASP ASN MET PRO GLU SEQRES 24 A 577 ILE GLU GLY LEU ASP ARG GLU GLU VAL LEU CYS VAL LYS SEQRES 25 A 577 ALA GLU ALA GLY THR ALA PHE GLU ASP ARG VAL ASN LYS SEQRES 26 A 577 ALA LYS GLN SER ALA MET GLU ALA ILE SER TRP PHE LYS SEQRES 27 A 577 ALA ARG MET ASP SER LEU VAL GLU ALA THR ILE GLY GLY SEQRES 28 A 577 LYS TRP LEU HIS ALA THR SER SER VAL LEU ASN ARG GLU SEQRES 29 A 577 LYS VAL TYR TYR ASN ILE ASP ASN MET ILE TYR ILE ASN SEQRES 30 A 577 THR GLY GLU VAL THR THR THR ASN THR SER PRO THR PRO SEQRES 31 A 577 GLU GLN ARG ALA ARG ALA VAL LYS ASN GLY TYR ASP GLN SEQRES 32 A 577 THR MET GLN LEU LEU ASP SER HIS LYS GLN THR PHE ASP SEQRES 33 A 577 HIS PRO LEU MET ALA ILE LEU TYR ILE GLY HIS ASP LYS SEQRES 34 A 577 LEU LYS ASP ALA LEU ILE ASP GLU LYS SER GLU LYS GLU SEQRES 35 A 577 ILE PHE GLU ALA SER ALA HIS ALA GLN ALA ILE LEU HIS SEQRES 36 A 577 LEU GLN GLU GLN ILE VAL LYS GLU MET ASN ASP GLY ASP SEQRES 37 A 577 TYR SER SER VAL GLN ASN TYR LEU ASP GLN ILE GLU ASP SEQRES 38 A 577 ILE LEU THR VAL ASP ALA LYS MET ASP ASP ILE GLN LYS SEQRES 39 A 577 GLU LYS ALA PHE ALA LEU CYS ILE LYS GLN VAL ASN PHE SEQRES 40 A 577 LEU SER GLU GLY LYS LEU GLU THR TYR LEU ASN LYS VAL SEQRES 41 A 577 GLU ALA GLU ALA LYS ALA ALA ALA GLU PRO SER TRP ALA SEQRES 42 A 577 THR LYS ILE LEU ASN LEU LEU TRP ALA PRO ILE GLU TRP SEQRES 43 A 577 VAL VAL SER LEU PHE LYS GLY PRO ALA GLN ASP PHE LYS SEQRES 44 A 577 VAL GLU VAL GLN PRO GLU PRO VAL LYS VAL SER THR SER SEQRES 45 A 577 GLU ASN GLN GLU THR FORMUL 2 HOH *86(H2 O) HELIX 1 1 LYS A 2 MET A 7 5 6 HELIX 2 2 GLY A 47 ARG A 60 1 14 HELIX 3 3 LYS A 62 LEU A 66 5 5 HELIX 4 4 SER A 73 VAL A 84 1 12 HELIX 5 5 ASP A 87 GLU A 96 1 10 HELIX 6 6 GLY A 115 GLU A 135 1 21 HELIX 7 7 GLU A 144 ALA A 166 1 23 HELIX 8 8 ASN A 172 LYS A 181 1 10 HELIX 9 9 VAL A 183 SER A 195 1 13 HELIX 10 10 THR A 214 LEU A 225 1 12 HELIX 11 11 GLU A 227 ILE A 233 5 7 HELIX 12 12 SER A 260 GLY A 269 1 10 HELIX 13 13 ASP A 302 GLU A 304 5 3 HELIX 14 14 ARG A 320 ASP A 340 1 21 HELIX 15 15 SER A 341 ILE A 347 1 7 HELIX 16 16 SER A 356 LEU A 359 5 4 HELIX 17 17 THR A 387 SER A 408 1 22 HELIX 18 18 HIS A 415 ILE A 423 1 9 HELIX 19 19 HIS A 425 LYS A 429 1 5 HELIX 20 20 SER A 437 ASP A 464 1 28 HELIX 21 21 SER A 469 VAL A 483 1 15 HELIX 22 22 ASP A 488 SER A 507 1 20 HELIX 23 23 GLY A 509 ALA A 525 1 17 HELIX 24 24 SER A 529 TRP A 539 1 11 HELIX 25 25 PRO A 541 SER A 547 1 7 HELIX 26 26 ALA A 553 PHE A 556 5 4 SHEET 1 AA 3 GLU A 19 LYS A 22 0 SHEET 2 AA 3 TYR A 28 SER A 31 -1 O SER A 29 N SER A 21 SHEET 3 AA 3 GLN A 411 PHE A 413 -1 O GLN A 411 N VAL A 30 SHEET 1 AB 2 GLU A 247 SER A 252 0 SHEET 2 AB 2 ASN A 235 ASN A 242 -1 O VAL A 238 N TYR A 251 SHEET 1 AC 4 GLY A 278 ARG A 279 0 SHEET 2 AC 4 TYR A 285 ALA A 287 1 O ILE A 286 N GLY A 278 SHEET 3 AC 4 ASN A 235 ASN A 242 -1 O THR A 241 N ALA A 287 SHEET 4 AC 4 GLU A 247 SER A 252 -1 O GLU A 247 N ASN A 242 SHEET 1 AD 7 GLY A 278 ARG A 279 0 SHEET 2 AD 7 TYR A 285 ALA A 287 1 O ILE A 286 N GLY A 278 SHEET 3 AD 7 ASN A 235 ASN A 242 -1 O THR A 241 N ALA A 287 SHEET 4 AD 7 HIS A 68 GLY A 71 1 O VAL A 69 N SER A 237 SHEET 5 AD 7 GLY A 37 LEU A 40 1 O LEU A 38 N SER A 70 SHEET 6 AD 7 VAL A 306 GLU A 312 1 O LEU A 307 N VAL A 39 SHEET 7 AD 7 MET A 371 ASN A 375 1 O ILE A 372 N LYS A 310 CRYST1 252.757 252.757 252.757 90.00 90.00 90.00 I 4 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003956 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003956 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003956 0.00000