HEADER VIRAL PROTEIN 24-FEB-12 4AKL TITLE STRUCTURE OF THE CRIMEAN-CONGO HAEMORRHAGIC FEVER VIRUS NUCLEOCAPSID TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; SOURCE 4 ORGANISM_TAXID: 11593; SOURCE 5 VARIANT: BAGDAD 12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2 PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET28-SUMO KEYWDS VIRAL PROTEIN, BUNYAVIRIDAE, CCHFV, CASPASE-3 EXPDTA X-RAY DIFFRACTION AUTHOR S.D.CARTER,C.T.WALTER,R.SURTEES,E.BERGERON,A.ARIZA,C.G.ALBARINO, AUTHOR 2 S.T.NICHOL,J.A.HISCOX,T.A.EDWARDS,J.N.BARR REVDAT 2 03-OCT-12 4AKL 1 JRNL REVDAT 1 22-AUG-12 4AKL 0 JRNL AUTH S.D.CARTER,R.SURTEES,C.T.WALTER,A.ARIZA,E.BERGERON, JRNL AUTH 2 S.T.NICHOL,J.A.HISCOX,T.A.EDWARDS,J.N.BARR JRNL TITL STRUCTURE, FUNCTION, AND EVOLUTION OF THE CRIMEAN-CONGO JRNL TITL 2 HEMORRHAGIC FEVER VIRUS NUCLEOCAPSID PROTEIN. JRNL REF J.VIROL. V. 86 10914 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22875964 JRNL DOI 10.1128/JVI.01555-12 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 95.17 REMARK 3 NUMBER OF REFLECTIONS : 53584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18639 REMARK 3 R VALUE (WORKING SET) : 0.18394 REMARK 3 FREE R VALUE : 0.23359 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.100 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.155 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.240 REMARK 3 BIN FREE R VALUE SET COUNT : 215 REMARK 3 BIN FREE R VALUE : 0.277 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.219 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02 REMARK 3 B22 (A**2) : -1.34 REMARK 3 B33 (A**2) : 0.75 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.61 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.243 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7863 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5434 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10641 ; 1.559 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13356 ; 1.167 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1004 ; 4.753 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 356 ;36.714 ;25.112 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1460 ;14.853 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1159 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8710 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1541 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1699 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5021 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3794 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3653 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 308 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.032 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.252 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 79 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4794 ; 0.502 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1947 ; 0.114 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7748 ; 0.924 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3069 ; 1.370 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2862 ; 2.194 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 482 5 REMARK 3 1 B 1 B 482 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 2814 ; 0.22 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 2814 ; 0.22 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 3651 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 3651 ; 0.37 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2814 ; 0.36 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2814 ; 0.36 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 3651 ; 0.41 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 3651 ; 0.41 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 183 REMARK 3 RESIDUE RANGE : A 296 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): -30.6281 14.5330 15.6956 REMARK 3 T TENSOR REMARK 3 T11: 0.1043 T22: 0.0686 REMARK 3 T33: 0.0480 T12: 0.0029 REMARK 3 T13: -0.0441 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.1199 L22: 1.6906 REMARK 3 L33: 1.5884 L12: -0.0372 REMARK 3 L13: -0.4561 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.1383 S13: 0.0555 REMARK 3 S21: -0.1176 S22: 0.0475 S23: 0.1367 REMARK 3 S31: -0.0884 S32: -0.2655 S33: -0.0727 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3972 57.0207 14.0916 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.0150 REMARK 3 T33: 0.6414 T12: -0.0248 REMARK 3 T13: 0.1501 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 6.3980 L22: 5.2710 REMARK 3 L33: 2.7076 L12: 0.0201 REMARK 3 L13: -2.2730 L23: 0.8940 REMARK 3 S TENSOR REMARK 3 S11: -0.5581 S12: 0.1830 S13: -1.5533 REMARK 3 S21: 0.2836 S22: 0.0306 S23: 0.2899 REMARK 3 S31: 0.5828 S32: -0.1753 S33: 0.5275 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 183 REMARK 3 RESIDUE RANGE : B 296 B 483 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3815 12.3889 31.9511 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.0436 REMARK 3 T33: 0.0916 T12: -0.0124 REMARK 3 T13: 0.0238 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.3103 L22: 1.4255 REMARK 3 L33: 2.0092 L12: 0.0594 REMARK 3 L13: -0.0379 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: 0.0368 S12: -0.0689 S13: 0.1521 REMARK 3 S21: -0.0276 S22: -0.0223 S23: -0.1631 REMARK 3 S31: -0.0562 S32: 0.2793 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 184 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1682 -29.7157 24.2933 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.0157 REMARK 3 T33: 0.1958 T12: 0.0010 REMARK 3 T13: -0.0805 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 1.5265 L22: 6.6435 REMARK 3 L33: 2.8542 L12: 0.3647 REMARK 3 L13: 0.2618 L23: 0.7654 REMARK 3 S TENSOR REMARK 3 S11: -0.1500 S12: -0.0262 S13: 0.3099 REMARK 3 S21: 0.0243 S22: 0.0426 S23: 0.1422 REMARK 3 S31: -0.1059 S32: 0.1441 S33: 0.1074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4AKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-FEB-12. REMARK 100 THE PDBE ID CODE IS EBI-51454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91730 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PILATUS 2M REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 48.79 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.3 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.47 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS SOLVED FROM A LOW-RESOLUTION DATASET REMARK 200 COLLECTED FROM A CRYSTAL CONTAINING A MERCURY DERIVATIVE. THE REMARK 200 FINAL DATA BELONG TO A NATIVE CRYSTAL THAT DIFFRACTED TO HIGHER REMARK 200 RESOLUTION. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 6.5, 0.2 M REMARK 280 NACL, 25% PEG 600 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.19000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.19000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 183 REMARK 465 GLY A 184 REMARK 465 GLY A 185 REMARK 465 ASP A 186 REMARK 465 GLU A 187 REMARK 465 ASN A 188 REMARK 465 PRO A 189 REMARK 465 ARG A 190 REMARK 465 GLY A 191 REMARK 465 ARG B 183 REMARK 465 GLY B 184 REMARK 465 GLY B 185 REMARK 465 ASP B 186 REMARK 465 GLU B 187 REMARK 465 ASN B 188 REMARK 465 PRO B 189 REMARK 465 ARG B 190 REMARK 465 GLY B 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 74 CB CYS A 74 SG -0.146 REMARK 500 CYS B 74 CB CYS B 74 SG -0.111 REMARK 500 GLU B 121 CG GLU B 121 CD 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 372 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 372 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 372 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 372 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 149 12.27 -147.52 REMARK 500 ASN A 150 -151.44 -85.89 REMARK 500 HIS A 264 43.48 -97.41 REMARK 500 ASN B 142 -179.16 -173.57 REMARK 500 SER B 149 16.86 -145.43 REMARK 500 ASN B 150 -146.77 -83.62 REMARK 500 ASN B 214 73.12 -152.44 REMARK 500 SER B 226 60.98 -104.56 REMARK 500 HIS B 264 35.37 -93.36 REMARK 500 ASN B 399 66.60 -152.77 REMARK 500 ASN B 424 74.10 38.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A1483 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B1483 DBREF 4AKL A 1 482 UNP Q70UR4 Q70UR4_9VIRU 1 482 DBREF 4AKL B 1 482 UNP Q70UR4 Q70UR4_9VIRU 1 482 SEQADV 4AKL ILE A 111 UNP Q70UR4 THR 111 CONFLICT SEQADV 4AKL HIS A 195 UNP Q70UR4 ARG 195 CONFLICT SEQADV 4AKL ASP A 445 UNP Q70UR4 HIS 445 CONFLICT SEQADV 4AKL ILE B 111 UNP Q70UR4 THR 111 CONFLICT SEQADV 4AKL HIS B 195 UNP Q70UR4 ARG 195 CONFLICT SEQADV 4AKL ASP B 445 UNP Q70UR4 HIS 445 CONFLICT SEQRES 1 A 482 MET GLU ASN LYS ILE GLU VAL ASN SER LYS ASP GLU MET SEQRES 2 A 482 ASN LYS TRP PHE GLU GLU PHE LYS LYS GLY ASN GLY LEU SEQRES 3 A 482 VAL ASP THR TYR THR ASN SER TYR SER PHE CYS GLU SER SEQRES 4 A 482 VAL PRO ASN LEU ASP ARG PHE VAL PHE GLN MET ALA GLY SEQRES 5 A 482 ALA THR ASP ASP ALA GLN LYS ASP SER ILE TYR ALA SER SEQRES 6 A 482 ALA LEU VAL GLU ALA THR LYS PHE CYS ALA PRO ILE TYR SEQRES 7 A 482 GLU CYS ALA TRP ALA SER SER THR GLY ILE VAL LYS LYS SEQRES 8 A 482 GLY LEU GLU TRP PHE GLU LYS ASN THR GLY THR ILE LYS SEQRES 9 A 482 SER TRP ASP GLU SER TYR ILE GLU LEU LYS VAL GLU VAL SEQRES 10 A 482 PRO LYS ILE GLU GLN LEU PHE ASN TYR GLN GLN ALA ALA SEQRES 11 A 482 LEU LYS TRP ARG LYS ASP ILE GLY PHE ARG VAL ASN ALA SEQRES 12 A 482 ASN THR ALA ALA LEU SER ASN LYS VAL LEU ALA GLU TYR SEQRES 13 A 482 LYS VAL PRO GLY GLU ILE VAL MET SER VAL LYS GLU MET SEQRES 14 A 482 LEU SER ASP MET ILE ARG ARG ARG ASN LEU ILE LEU ASN SEQRES 15 A 482 ARG GLY GLY ASP GLU ASN PRO ARG GLY PRO VAL SER HIS SEQRES 16 A 482 GLU HIS VAL GLU TRP CYS ARG GLU PHE VAL LYS GLY LYS SEQRES 17 A 482 TYR ILE MET ALA PHE ASN PRO PRO TRP GLY ASP ILE ASN SEQRES 18 A 482 LYS SER GLY ARG SER GLY ILE ALA LEU VAL ALA THR GLY SEQRES 19 A 482 LEU ALA LYS LEU ALA GLU THR GLU GLY LYS GLY VAL PHE SEQRES 20 A 482 ASP GLU ALA LYS LYS THR VAL GLU ALA LEU ASN GLY TYR SEQRES 21 A 482 LEU ASP LYS HIS LYS ASP GLU VAL ASP LYS ALA SER ALA SEQRES 22 A 482 ASP ASN MET VAL THR ASN LEU LEU LYS HIS VAL ALA LYS SEQRES 23 A 482 ALA GLN GLU LEU TYR LYS ASN SER SER ALA LEU ARG ALA SEQRES 24 A 482 GLN GLY ALA GLN ILE ASP THR VAL PHE SER SER TYR TYR SEQRES 25 A 482 TRP LEU TYR LYS ALA GLY VAL THR PRO GLU THR PHE PRO SEQRES 26 A 482 THR VAL SER GLN PHE LEU PHE GLU LEU GLY LYS HIS PRO SEQRES 27 A 482 ARG GLY THR LYS LYS MET LYS LYS ALA LEU LEU SER THR SEQRES 28 A 482 PRO MET LYS TRP GLY LYS LYS LEU TYR GLU LEU PHE ALA SEQRES 29 A 482 ASP ASP SER PHE GLN GLN ASN ARG ILE TYR MET HIS PRO SEQRES 30 A 482 ALA VAL LEU THR ALA GLY ARG ILE SER GLU MET GLY VAL SEQRES 31 A 482 CYS PHE GLY THR ILE PRO VAL ALA ASN PRO ASP ASP ALA SEQRES 32 A 482 ALA LEU GLY SER GLY HIS THR LYS SER ILE LEU ASN LEU SEQRES 33 A 482 ARG THR ASN THR GLU THR ASN ASN PRO CYS ALA ARG THR SEQRES 34 A 482 ILE VAL LYS LEU PHE GLU ILE GLN LYS THR GLY PHE ASN SEQRES 35 A 482 ILE GLN ASP MET ASP ILE VAL ALA SER GLU HIS LEU LEU SEQRES 36 A 482 HIS GLN SER LEU VAL GLY LYS GLN SER PRO PHE GLN ASN SEQRES 37 A 482 ALA TYR ASN VAL LYS GLY ASN ALA THR SER ALA ASN ILE SEQRES 38 A 482 ILE SEQRES 1 B 482 MET GLU ASN LYS ILE GLU VAL ASN SER LYS ASP GLU MET SEQRES 2 B 482 ASN LYS TRP PHE GLU GLU PHE LYS LYS GLY ASN GLY LEU SEQRES 3 B 482 VAL ASP THR TYR THR ASN SER TYR SER PHE CYS GLU SER SEQRES 4 B 482 VAL PRO ASN LEU ASP ARG PHE VAL PHE GLN MET ALA GLY SEQRES 5 B 482 ALA THR ASP ASP ALA GLN LYS ASP SER ILE TYR ALA SER SEQRES 6 B 482 ALA LEU VAL GLU ALA THR LYS PHE CYS ALA PRO ILE TYR SEQRES 7 B 482 GLU CYS ALA TRP ALA SER SER THR GLY ILE VAL LYS LYS SEQRES 8 B 482 GLY LEU GLU TRP PHE GLU LYS ASN THR GLY THR ILE LYS SEQRES 9 B 482 SER TRP ASP GLU SER TYR ILE GLU LEU LYS VAL GLU VAL SEQRES 10 B 482 PRO LYS ILE GLU GLN LEU PHE ASN TYR GLN GLN ALA ALA SEQRES 11 B 482 LEU LYS TRP ARG LYS ASP ILE GLY PHE ARG VAL ASN ALA SEQRES 12 B 482 ASN THR ALA ALA LEU SER ASN LYS VAL LEU ALA GLU TYR SEQRES 13 B 482 LYS VAL PRO GLY GLU ILE VAL MET SER VAL LYS GLU MET SEQRES 14 B 482 LEU SER ASP MET ILE ARG ARG ARG ASN LEU ILE LEU ASN SEQRES 15 B 482 ARG GLY GLY ASP GLU ASN PRO ARG GLY PRO VAL SER HIS SEQRES 16 B 482 GLU HIS VAL GLU TRP CYS ARG GLU PHE VAL LYS GLY LYS SEQRES 17 B 482 TYR ILE MET ALA PHE ASN PRO PRO TRP GLY ASP ILE ASN SEQRES 18 B 482 LYS SER GLY ARG SER GLY ILE ALA LEU VAL ALA THR GLY SEQRES 19 B 482 LEU ALA LYS LEU ALA GLU THR GLU GLY LYS GLY VAL PHE SEQRES 20 B 482 ASP GLU ALA LYS LYS THR VAL GLU ALA LEU ASN GLY TYR SEQRES 21 B 482 LEU ASP LYS HIS LYS ASP GLU VAL ASP LYS ALA SER ALA SEQRES 22 B 482 ASP ASN MET VAL THR ASN LEU LEU LYS HIS VAL ALA LYS SEQRES 23 B 482 ALA GLN GLU LEU TYR LYS ASN SER SER ALA LEU ARG ALA SEQRES 24 B 482 GLN GLY ALA GLN ILE ASP THR VAL PHE SER SER TYR TYR SEQRES 25 B 482 TRP LEU TYR LYS ALA GLY VAL THR PRO GLU THR PHE PRO SEQRES 26 B 482 THR VAL SER GLN PHE LEU PHE GLU LEU GLY LYS HIS PRO SEQRES 27 B 482 ARG GLY THR LYS LYS MET LYS LYS ALA LEU LEU SER THR SEQRES 28 B 482 PRO MET LYS TRP GLY LYS LYS LEU TYR GLU LEU PHE ALA SEQRES 29 B 482 ASP ASP SER PHE GLN GLN ASN ARG ILE TYR MET HIS PRO SEQRES 30 B 482 ALA VAL LEU THR ALA GLY ARG ILE SER GLU MET GLY VAL SEQRES 31 B 482 CYS PHE GLY THR ILE PRO VAL ALA ASN PRO ASP ASP ALA SEQRES 32 B 482 ALA LEU GLY SER GLY HIS THR LYS SER ILE LEU ASN LEU SEQRES 33 B 482 ARG THR ASN THR GLU THR ASN ASN PRO CYS ALA ARG THR SEQRES 34 B 482 ILE VAL LYS LEU PHE GLU ILE GLN LYS THR GLY PHE ASN SEQRES 35 B 482 ILE GLN ASP MET ASP ILE VAL ALA SER GLU HIS LEU LEU SEQRES 36 B 482 HIS GLN SER LEU VAL GLY LYS GLN SER PRO PHE GLN ASN SEQRES 37 B 482 ALA TYR ASN VAL LYS GLY ASN ALA THR SER ALA ASN ILE SEQRES 38 B 482 ILE HET PGE A1483 10 HET PGE B1483 10 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 PGE 2(C6 H14 O4) FORMUL 4 HOH *313(H2 O) HELIX 1 1 SER A 9 GLY A 25 1 17 HELIX 2 2 ASP A 44 ALA A 53 1 10 HELIX 3 3 ASP A 55 LYS A 72 1 18 HELIX 4 4 PRO A 76 SER A 84 1 9 HELIX 5 5 SER A 85 ASN A 99 1 15 HELIX 6 6 THR A 100 THR A 102 5 3 HELIX 7 7 ILE A 103 GLU A 108 1 6 HELIX 8 8 SER A 109 LYS A 114 1 6 HELIX 9 9 LYS A 119 ILE A 137 1 19 HELIX 10 10 ASN A 142 ALA A 146 5 5 HELIX 11 11 PRO A 159 GLU A 161 5 3 HELIX 12 12 ILE A 162 ASN A 182 1 21 HELIX 13 13 SER A 194 VAL A 205 1 12 HELIX 14 14 LYS A 208 ASN A 214 5 7 HELIX 15 15 ALA A 229 GLY A 243 1 15 HELIX 16 16 LYS A 244 HIS A 264 1 21 HELIX 17 17 LYS A 265 VAL A 268 5 4 HELIX 18 18 ASP A 269 ASN A 293 1 25 HELIX 19 19 SER A 294 ALA A 302 1 9 HELIX 20 20 ASP A 305 ALA A 317 1 13 HELIX 21 21 THR A 323 HIS A 337 1 15 HELIX 22 22 GLY A 340 THR A 351 1 12 HELIX 23 23 LYS A 354 GLU A 361 1 8 HELIX 24 24 ASN A 371 MET A 375 5 5 HELIX 25 25 ARG A 384 GLY A 393 1 10 HELIX 26 26 ASN A 399 GLY A 406 5 8 HELIX 27 27 HIS A 409 ASN A 415 5 7 HELIX 28 28 ASN A 424 PHE A 441 1 18 HELIX 29 29 VAL A 449 GLY A 461 1 13 HELIX 30 30 ASN A 475 ALA A 479 5 5 HELIX 31 31 SER B 9 GLY B 25 1 17 HELIX 32 32 LEU B 43 ALA B 53 1 11 HELIX 33 33 ASP B 55 LYS B 72 1 18 HELIX 34 34 PRO B 76 SER B 84 1 9 HELIX 35 35 SER B 85 ASN B 99 1 15 HELIX 36 36 ILE B 103 GLU B 108 1 6 HELIX 37 37 SER B 109 LYS B 114 1 6 HELIX 38 38 LYS B 119 ILE B 137 1 19 HELIX 39 39 ASN B 142 ALA B 146 5 5 HELIX 40 40 PRO B 159 GLU B 161 5 3 HELIX 41 41 ILE B 162 ASN B 182 1 21 HELIX 42 42 SER B 194 VAL B 205 1 12 HELIX 43 43 LYS B 208 ASN B 214 5 7 HELIX 44 44 ALA B 229 GLY B 243 1 15 HELIX 45 45 LYS B 244 HIS B 264 1 21 HELIX 46 46 LYS B 265 VAL B 268 5 4 HELIX 47 47 ASP B 269 ASN B 293 1 25 HELIX 48 48 SER B 294 ALA B 302 1 9 HELIX 49 49 ASP B 305 ALA B 317 1 13 HELIX 50 50 THR B 323 HIS B 337 1 15 HELIX 51 51 GLY B 340 THR B 351 1 12 HELIX 52 52 LYS B 354 GLU B 361 1 8 HELIX 53 53 ASN B 371 MET B 375 5 5 HELIX 54 54 THR B 381 GLY B 383 5 3 HELIX 55 55 ARG B 384 GLY B 393 1 10 HELIX 56 56 ASN B 399 GLY B 406 5 8 HELIX 57 57 HIS B 409 ASN B 415 5 7 HELIX 58 58 ASN B 424 PHE B 441 1 18 HELIX 59 59 ASN B 442 MET B 446 5 5 HELIX 60 60 VAL B 449 GLY B 461 1 13 HELIX 61 61 ASN B 475 ALA B 479 5 5 SHEET 1 AA 2 GLU A 155 TYR A 156 0 SHEET 2 AA 2 ASN A 480 ILE A 481 1 O ASN A 480 N TYR A 156 SHEET 1 BA 2 GLU B 155 LYS B 157 0 SHEET 2 BA 2 ASN B 480 ILE B 482 1 O ASN B 480 N TYR B 156 CISPEP 1 ARG A 225 SER A 226 0 -6.21 CISPEP 2 ARG B 225 SER B 226 0 -8.18 SITE 1 AC1 2 ARG A 298 TYR A 374 SITE 1 AC2 1 ARG B 298 CRYST1 150.380 72.060 101.230 90.00 110.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006650 0.000000 0.002513 0.00000 SCALE2 0.000000 0.013877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010560 0.00000 MTRIX1 1 -0.751000 -0.005975 -0.660200 -0.35710 1 MTRIX2 1 0.005259 -1.000000 0.003067 27.14000 1 MTRIX3 1 -0.660200 -0.001169 0.751000 0.02075 1