HEADER OXIDOREDUCTASE 28-FEB-12 4AKP TITLE MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: E498T TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPORE COAT PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 EC: 1.10.3.2; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, MULTI-COPPER OXIDASE, TRINUCLEAR CLUSTER OXYGEN KEYWDS 2 REDUCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.S.SILVA,Z.CHEN,P.DURAO,M.M.PEREIRA,S.TODOROVIC,P.HILDEBRANDT, AUTHOR 2 L.O.MARTINS,P.F.LINDLEY,I.BENTO REVDAT 2 20-DEC-23 4AKP 1 REMARK LINK REVDAT 1 14-MAR-12 4AKP 0 JRNL AUTH Z.CHEN,P.DURAO,C.S.SILVA,M.M.PEREIRA,S.TODOROVIC, JRNL AUTH 2 P.HILDEBRANDT,I.BENTO,P.F.LINDLEY,L.O.MARTINS JRNL TITL THE ROLE OF GLU498 IN THE DIOXYGEN REACTIVITY OF JRNL TITL 2 COTA-LACCASE FROM BACILLUS SUBTILIS. JRNL REF DALTON TRANS V. 39 2875 2010 JRNL REFN ISSN 1477-9226 JRNL PMID 20200715 JRNL DOI 10.1039/B922734B REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2840 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3815 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4069 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 469 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4305 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5835 ; 1.143 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;34.233 ;23.738 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 685 ;12.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 623 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3318 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1887 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2802 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 480 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.143 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.117 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2643 ; 0.552 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4194 ; 0.947 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1911 ; 1.413 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1636 ; 2.184 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290047106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55879 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 88.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1W6L REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 % PEG 4K, 0.1 M SODIUM CITRATE REMARK 280 PH5.5, 26 % ISOPROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.64367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.28733 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.28733 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.64367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 498 TO THR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 91 REMARK 465 ASP A 92 REMARK 465 SER A 93 REMARK 465 GLN A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 512 REMARK 465 LYS A 513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 187 -119.61 59.62 REMARK 500 TRP A 240 68.79 25.07 REMARK 500 ALA A 297 -9.59 78.58 REMARK 500 THR A 330 -95.66 -123.49 REMARK 500 ILE A 334 -61.03 -107.71 REMARK 500 ALA A 375 -140.67 -138.80 REMARK 500 LEU A 425 -52.77 70.90 REMARK 500 TYR A 488 -164.56 -126.61 REMARK 500 TYR A 500 76.05 -159.70 REMARK 500 ASP A 501 50.92 -146.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1515 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 HIS A 422 NE2 165.3 REMARK 620 3 OXY A1516 O1 95.2 97.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1513 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 ND1 REMARK 620 2 HIS A 153 NE2 126.4 REMARK 620 3 HIS A 493 NE2 106.8 110.4 REMARK 620 4 OXY A1516 O2 119.3 100.4 86.3 REMARK 620 5 OXY A1516 O1 91.3 115.2 103.3 29.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1514 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 155 NE2 REMARK 620 2 HIS A 424 NE2 105.8 REMARK 620 3 HIS A 491 NE2 109.9 108.9 REMARK 620 4 OXY A1516 O2 98.3 130.0 102.7 REMARK 620 5 OXY A1516 O1 117.7 101.2 112.4 29.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1512 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 419 ND1 REMARK 620 2 CYS A 492 SG 121.0 REMARK 620 3 HIS A 497 ND1 108.5 126.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 1516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1520 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1521 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1522 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1523 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1524 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1526 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1527 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1528 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GSK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COTA, AN ENDOSPORE COAT PROTEIN FROM BACILLUS REMARK 900 SUBTILIS REMARK 900 RELATED ID: 1OF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BACILLUS SUBTILIS COTA AFTER 1H SOAKING WITH REMARK 900 ABTS REMARK 900 RELATED ID: 1UVW RELATED DB: PDB REMARK 900 BACILLUS SUBTILIS COTA LACCASE ADDUCT WITH ABTS REMARK 900 RELATED ID: 1W6L RELATED DB: PDB REMARK 900 3D STRUCTURE OF COTA INCUBATED WITH CUCL2 REMARK 900 RELATED ID: 1W6W RELATED DB: PDB REMARK 900 3D STRUCTURE OF COTA INCUBATED WITH SODIUM AZIDE REMARK 900 RELATED ID: 1W8E RELATED DB: PDB REMARK 900 3D STRUCTURE OF COTA INCUBATED WITH HYDROGEN PEROXIDE REMARK 900 RELATED ID: 2BHF RELATED DB: PDB REMARK 900 3D STRUCTURE OF THE REDUCED FORM OF COTA REMARK 900 RELATED ID: 2X87 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RECONSTITUTED COTA REMARK 900 RELATED ID: 2X88 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HOLOCOTA REMARK 900 RELATED ID: 4A66 RELATED DB: PDB REMARK 900 MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: REMARK 900 D116A MUTANT REMARK 900 RELATED ID: 4A67 RELATED DB: PDB REMARK 900 MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: REMARK 900 D116E MUTANT REMARK 900 RELATED ID: 4A68 RELATED DB: PDB REMARK 900 MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: REMARK 900 D116N MUTANT RELATED ENTRIES REMARK 900 RELATED ID: 4AKO RELATED DB: PDB REMARK 900 MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: REMARK 900 E498L MUTANT REMARK 900 RELATED ID: 4AKQ RELATED DB: PDB REMARK 900 MUTATIONS IN THE NEIGHBOURHOOD OF COTA-LACCASE TRINUCLEAR SITE: REMARK 900 E498D MUTANT REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT RESIDUE 35 THERE IS AN OXIDIZED CYSTEINE DBREF 4AKP A 1 513 UNP P07788 COTA_BACSU 1 513 SEQADV 4AKP THR A 498 UNP P07788 GLU 498 ENGINEERED MUTATION SEQRES 1 A 513 MET THR LEU GLU LYS PHE VAL ASP ALA LEU PRO ILE PRO SEQRES 2 A 513 ASP THR LEU LYS PRO VAL GLN GLN SER LYS GLU LYS THR SEQRES 3 A 513 TYR TYR GLU VAL THR MET GLU GLU CSX THR HIS GLN LEU SEQRES 4 A 513 HIS ARG ASP LEU PRO PRO THR ARG LEU TRP GLY TYR ASN SEQRES 5 A 513 GLY LEU PHE PRO GLY PRO THR ILE GLU VAL LYS ARG ASN SEQRES 6 A 513 GLU ASN VAL TYR VAL LYS TRP MET ASN ASN LEU PRO SER SEQRES 7 A 513 THR HIS PHE LEU PRO ILE ASP HIS THR ILE HIS HIS SER SEQRES 8 A 513 ASP SER GLN HIS GLU GLU PRO GLU VAL LYS THR VAL VAL SEQRES 9 A 513 HIS LEU HIS GLY GLY VAL THR PRO ASP ASP SER ASP GLY SEQRES 10 A 513 TYR PRO GLU ALA TRP PHE SER LYS ASP PHE GLU GLN THR SEQRES 11 A 513 GLY PRO TYR PHE LYS ARG GLU VAL TYR HIS TYR PRO ASN SEQRES 12 A 513 GLN GLN ARG GLY ALA ILE LEU TRP TYR HIS ASP HIS ALA SEQRES 13 A 513 MET ALA LEU THR ARG LEU ASN VAL TYR ALA GLY LEU VAL SEQRES 14 A 513 GLY ALA TYR ILE ILE HIS ASP PRO LYS GLU LYS ARG LEU SEQRES 15 A 513 LYS LEU PRO SER ASP GLU TYR ASP VAL PRO LEU LEU ILE SEQRES 16 A 513 THR ASP ARG THR ILE ASN GLU ASP GLY SER LEU PHE TYR SEQRES 17 A 513 PRO SER ALA PRO GLU ASN PRO SER PRO SER LEU PRO ASN SEQRES 18 A 513 PRO SER ILE VAL PRO ALA PHE CYS GLY GLU THR ILE LEU SEQRES 19 A 513 VAL ASN GLY LYS VAL TRP PRO TYR LEU GLU VAL GLU PRO SEQRES 20 A 513 ARG LYS TYR ARG PHE ARG VAL ILE ASN ALA SER ASN THR SEQRES 21 A 513 ARG THR TYR ASN LEU SER LEU ASP ASN GLY GLY ASP PHE SEQRES 22 A 513 ILE GLN ILE GLY SER ASP GLY GLY LEU LEU PRO ARG SER SEQRES 23 A 513 VAL LYS LEU ASN SER PHE SER LEU ALA PRO ALA GLU ARG SEQRES 24 A 513 TYR ASP ILE ILE ILE ASP PHE THR ALA TYR GLU GLY GLU SEQRES 25 A 513 SER ILE ILE LEU ALA ASN SER ALA GLY CYS GLY GLY ASP SEQRES 26 A 513 VAL ASN PRO GLU THR ASP ALA ASN ILE MET GLN PHE ARG SEQRES 27 A 513 VAL THR LYS PRO LEU ALA GLN LYS ASP GLU SER ARG LYS SEQRES 28 A 513 PRO LYS TYR LEU ALA SER TYR PRO SER VAL GLN HIS GLU SEQRES 29 A 513 ARG ILE GLN ASN ILE ARG THR LEU LYS LEU ALA GLY THR SEQRES 30 A 513 GLN ASP GLU TYR GLY ARG PRO VAL LEU LEU LEU ASN ASN SEQRES 31 A 513 LYS ARG TRP HIS ASP PRO VAL THR GLU THR PRO LYS VAL SEQRES 32 A 513 GLY THR THR GLU ILE TRP SER ILE ILE ASN PRO THR ARG SEQRES 33 A 513 GLY THR HIS PRO ILE HIS LEU HIS LEU VAL SER PHE ARG SEQRES 34 A 513 VAL LEU ASP ARG ARG PRO PHE ASP ILE ALA ARG TYR GLN SEQRES 35 A 513 GLU SER GLY GLU LEU SER TYR THR GLY PRO ALA VAL PRO SEQRES 36 A 513 PRO PRO PRO SER GLU LYS GLY TRP LYS ASP THR ILE GLN SEQRES 37 A 513 ALA HIS ALA GLY GLU VAL LEU ARG ILE ALA ALA THR PHE SEQRES 38 A 513 GLY PRO TYR SER GLY ARG TYR VAL TRP HIS CYS HIS ILE SEQRES 39 A 513 LEU GLU HIS THR ASP TYR ASP MET MET ARG PRO MET ASP SEQRES 40 A 513 ILE THR ASP PRO HIS LYS MODRES 4AKP CSX A 35 CYS S-OXY CYSTEINE HET CSX A 35 10 HET CU A1512 1 HET CU A1513 1 HET CU A1514 1 HET CU A1515 1 HET OXY A1516 2 HET EDO A1517 5 HET EDO A1518 4 HET EDO A1519 4 HET EDO A1520 4 HET EDO A1521 4 HET EDO A1522 4 HET EDO A1523 4 HET EDO A1524 4 HET EDO A1525 4 HET EDO A1526 4 HET EDO A1527 4 HET EDO A1528 4 HETNAM CSX S-OXY CYSTEINE HETNAM CU COPPER (II) ION HETNAM OXY OXYGEN MOLECULE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSX C3 H7 N O3 S FORMUL 2 CU 4(CU 2+) FORMUL 6 OXY O2 FORMUL 7 EDO 12(C2 H6 O2) FORMUL 19 HOH *469(H2 O) HELIX 1 1 PRO A 112 ASP A 116 5 5 HELIX 2 2 SER A 124 GLU A 128 5 5 HELIX 3 3 LEU A 159 GLY A 167 1 9 HELIX 4 4 ASP A 176 LYS A 183 5 8 HELIX 5 5 SER A 186 GLU A 188 5 3 HELIX 6 6 THR A 307 GLU A 310 5 4 HELIX 7 7 TYR A 358 GLN A 362 5 5 HELIX 8 8 ASP A 437 GLY A 445 1 9 HELIX 9 9 PRO A 457 LYS A 461 5 5 HELIX 10 10 ILE A 494 ASP A 499 1 6 SHEET 1 AA 2 GLN A 20 GLN A 21 0 SHEET 2 AA 2 THR A 26 HIS A 37 -1 N TYR A 27 O GLN A 20 SHEET 1 AB 2 THR A 46 TYR A 51 0 SHEET 2 AB 2 THR A 26 HIS A 37 -1 O GLU A 33 N GLY A 50 SHEET 1 AC 4 VAL A 138 TYR A 141 0 SHEET 2 AC 4 VAL A 68 ASN A 74 -1 O VAL A 68 N TYR A 141 SHEET 3 AC 4 THR A 26 HIS A 37 1 O THR A 26 N TYR A 69 SHEET 4 AC 4 THR A 46 TYR A 51 -1 O THR A 46 N HIS A 37 SHEET 1 AD 4 VAL A 138 TYR A 141 0 SHEET 2 AD 4 VAL A 68 ASN A 74 -1 O VAL A 68 N TYR A 141 SHEET 3 AD 4 THR A 26 HIS A 37 1 O THR A 26 N TYR A 69 SHEET 4 AD 4 GLN A 20 GLN A 21 -1 O GLN A 20 N TYR A 27 SHEET 1 AE 4 ILE A 60 LYS A 63 0 SHEET 2 AE 4 VAL A 169 HIS A 175 1 O ALA A 171 N ILE A 60 SHEET 3 AE 4 ALA A 148 ASP A 154 -1 O ALA A 148 N ILE A 174 SHEET 4 AE 4 VAL A 104 HIS A 107 -1 O HIS A 105 N HIS A 153 SHEET 1 AF 2 LEU A 206 PHE A 207 0 SHEET 2 AF 2 ASP A 190 ILE A 200 -1 O THR A 199 N PHE A 207 SHEET 1 AG 4 LYS A 238 VAL A 239 0 SHEET 2 AG 4 THR A 232 VAL A 235 -1 O VAL A 235 N LYS A 238 SHEET 3 AG 4 ASP A 190 ILE A 200 -1 O THR A 196 N LEU A 234 SHEET 4 AG 4 LEU A 206 PHE A 207 -1 O PHE A 207 N THR A 199 SHEET 1 AH 7 LYS A 238 VAL A 239 0 SHEET 2 AH 7 THR A 232 VAL A 235 -1 O VAL A 235 N LYS A 238 SHEET 3 AH 7 ASP A 190 ILE A 200 -1 O THR A 196 N LEU A 234 SHEET 4 AH 7 LYS A 249 ASN A 256 1 O ARG A 251 N VAL A 191 SHEET 5 AH 7 ARG A 299 ASP A 305 -1 O TYR A 300 N VAL A 254 SHEET 6 AH 7 PHE A 273 SER A 278 -1 O ILE A 274 N ILE A 303 SHEET 7 AH 7 GLY A 281 LEU A 289 -1 O GLY A 281 N SER A 278 SHEET 1 AI 5 TYR A 242 GLU A 244 0 SHEET 2 AI 5 ASN A 333 ARG A 338 1 O GLN A 336 N LEU A 243 SHEET 3 AI 5 SER A 313 ASN A 318 -1 O ILE A 314 N PHE A 337 SHEET 4 AI 5 TYR A 263 LEU A 267 -1 O SER A 266 N ALA A 317 SHEET 5 AI 5 SER A 291 LEU A 294 -1 O PHE A 292 N LEU A 265 SHEET 1 AJ 5 PRO A 384 LEU A 388 0 SHEET 2 AJ 5 ILE A 366 GLN A 378 -1 O ALA A 375 N LEU A 387 SHEET 3 AJ 5 THR A 406 ASN A 413 1 O THR A 406 N GLN A 367 SHEET 4 AJ 5 GLU A 473 THR A 480 -1 O GLU A 473 N ASN A 413 SHEET 5 AJ 5 ARG A 429 PRO A 435 -1 O ARG A 429 N ALA A 478 SHEET 1 AK 4 THR A 466 ALA A 469 0 SHEET 2 AK 4 HIS A 419 LEU A 423 -1 O HIS A 419 N ALA A 469 SHEET 3 AK 4 GLY A 486 CYS A 492 -1 O HIS A 491 N HIS A 422 SHEET 4 AK 4 MET A 503 ILE A 508 -1 O ARG A 504 N TRP A 490 SSBOND 1 CYS A 229 CYS A 322 1555 1555 2.04 LINK C GLU A 34 N CSX A 35 1555 1555 1.33 LINK C CSX A 35 N THR A 36 1555 1555 1.33 LINK NE2 HIS A 105 CU CU A1515 1555 1555 1.99 LINK ND1 HIS A 107 CU CU A1513 1555 1555 2.01 LINK NE2 HIS A 153 CU CU A1513 1555 1555 2.03 LINK NE2 HIS A 155 CU CU A1514 1555 1555 2.02 LINK ND1 HIS A 419 CU CU A1512 1555 1555 2.01 LINK NE2 HIS A 422 CU CU A1515 1555 1555 1.99 LINK NE2 HIS A 424 CU CU A1514 1555 1555 2.01 LINK NE2 HIS A 491 CU CU A1514 1555 1555 2.01 LINK SG CYS A 492 CU CU A1512 1555 1555 2.29 LINK NE2 HIS A 493 CU CU A1513 1555 1555 2.02 LINK ND1 HIS A 497 CU CU A1512 1555 1555 1.99 LINK CU CU A1513 O2 OXY A1516 1555 1555 2.07 LINK CU CU A1513 O1 OXY A1516 1555 1555 2.20 LINK CU CU A1514 O2 OXY A1516 1555 1555 2.06 LINK CU CU A1514 O1 OXY A1516 1555 1555 2.17 LINK CU CU A1515 O1 OXY A1516 1555 1555 2.10 CISPEP 1 PHE A 55 PRO A 56 0 -4.72 CISPEP 2 ASN A 221 PRO A 222 0 -2.13 CISPEP 3 GLY A 482 PRO A 483 0 4.67 CISPEP 4 TYR A 500 ASP A 501 0 2.20 SITE 1 AC1 4 HIS A 419 CYS A 492 HIS A 497 MET A 502 SITE 1 AC2 5 HIS A 107 HIS A 153 HIS A 493 CU A1515 SITE 2 AC2 5 OXY A1516 SITE 1 AC3 6 HIS A 155 HIS A 422 HIS A 424 HIS A 491 SITE 2 AC3 6 CU A1515 OXY A1516 SITE 1 AC4 7 HIS A 105 HIS A 107 HIS A 422 HIS A 424 SITE 2 AC4 7 CU A1513 CU A1514 OXY A1516 SITE 1 AC5 11 HIS A 105 HIS A 107 HIS A 153 HIS A 155 SITE 2 AC5 11 HIS A 422 HIS A 424 HIS A 491 HIS A 493 SITE 3 AC5 11 CU A1513 CU A1514 CU A1515 SITE 1 AC6 7 ASP A 113 ASP A 114 TYR A 118 TYR A 133 SITE 2 AC6 7 LYS A 135 ARG A 487 HOH A2150 SITE 1 AC7 8 LYS A 25 TYR A 69 VAL A 138 THR A 307 SITE 2 AC7 8 ALA A 308 TYR A 309 GLU A 310 HOH A2463 SITE 1 AC8 7 ASN A 74 LEU A 76 PRO A 77 VAL A 100 SITE 2 AC8 7 SER A 124 LYS A 125 HOH A2117 SITE 1 AC9 3 GLU A 188 GLU A 244 TYR A 250 SITE 1 BC1 7 ARG A 136 GLU A 137 VAL A 138 PRO A 247 SITE 2 BC1 7 LEU A 343 HOH A2184 HOH A2464 SITE 1 BC2 8 ASP A 268 ALA A 317 PRO A 328 ALA A 332 SITE 2 BC2 8 ASN A 333 HOH A2296 HOH A2465 HOH A2466 SITE 1 BC3 6 LYS A 183 LEU A 184 SER A 186 GLU A 348 SITE 2 BC3 6 SER A 349 HOH A2227 SITE 1 BC4 5 GLN A 362 ARG A 429 ALA A 478 THR A 480 SITE 2 BC4 5 HOH A2423 SITE 1 BC5 6 ARG A 64 GLU A 66 HOH A2048 HOH A2095 SITE 2 BC5 6 HOH A2098 HOH A2468 SITE 1 BC6 3 SER A 313 HOH A2330 HOH A2345 SITE 1 BC7 8 PRO A 247 GLU A 310 VAL A 339 THR A 340 SITE 2 BC7 8 LYS A 341 PRO A 342 HOH A2348 HOH A2469 CRYST1 101.898 101.898 136.931 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009814 0.005666 0.000000 0.00000 SCALE2 0.000000 0.011332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007303 0.00000