HEADER HYDROLASE 28-FEB-12 4AKS TITLE PATG MACROCYCLASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIAZOLINE OXIDASE/SUBTILISIN-LIKE PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MACROCYCLASE DOMAIN, RESIDUES 492-851; COMPND 5 SYNONYM: PATG; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLORON DIDEMNI; SOURCE 3 ORGANISM_TAXID: 1216; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PHISTEV KEYWDS HYDROLASE, PATELLAMIDE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,A.BENT,W.E.HOUSSEN,D.ZOLLMAN,F.MORAWITZ,S.SHIRRAN, AUTHOR 2 J.VENDOME,A.F.NNEOYIEGBE,L.TREMBLEAU,C.H.BOTTING,M.C.M.SMITH, AUTHOR 3 M.JASPARS,J.H.NAISMITH REVDAT 3 06-NOV-13 4AKS 1 AUTHOR REVDAT 2 22-AUG-12 4AKS 1 JRNL REVDAT 1 18-JUL-12 4AKS 0 JRNL AUTH J.KOEHNKE,A.BENT,W.E.HOUSSEN,D.ZOLLMAN,F.MORAWITZ,S.SHIRRAN, JRNL AUTH 2 J.VENDOME,A.F.NNEOYIEGBE,L.TREMBLEAU,C.H.BOTTING,M.C.SMITH, JRNL AUTH 3 M.JASPARS,J.H.NAISMITH JRNL TITL THE MECHANISM OF PATELLAMIDE MACROCYCLIZATION REVEALED BY JRNL TITL 2 THE CHARACTERIZATION OF THE PATG MACROCYCLASE DOMAIN. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 767 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22796963 JRNL DOI 10.1038/NSMB.2340 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.46 REMARK 3 NUMBER OF REFLECTIONS : 38196 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20386 REMARK 3 R VALUE (WORKING SET) : 0.20277 REMARK 3 FREE R VALUE : 0.22411 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2016 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.186 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.242 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.355 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.352 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4653 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 224 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.332 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13 REMARK 3 B22 (A**2) : 0.00 REMARK 3 B33 (A**2) : 0.10 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.28 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4743 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3130 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6466 ; 1.249 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7746 ; 1.067 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 5.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;41.137 ;25.876 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;13.451 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.871 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 762 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5260 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 795 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 514 A 639 REMARK 3 ORIGIN FOR THE GROUP (A): -38.0570 11.1740 48.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.1442 REMARK 3 T33: 0.1960 T12: -0.0434 REMARK 3 T13: 0.0008 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 1.1672 L22: 1.8143 REMARK 3 L33: 0.8012 L12: 0.5299 REMARK 3 L13: 0.4462 L23: 0.5679 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.0435 S13: 0.1480 REMARK 3 S21: -0.0467 S22: 0.0042 S23: -0.2766 REMARK 3 S31: -0.0331 S32: 0.0512 S33: -0.0565 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 640 A 851 REMARK 3 ORIGIN FOR THE GROUP (A): -44.4670 -1.3820 45.2590 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1405 REMARK 3 T33: 0.1192 T12: -0.0359 REMARK 3 T13: -0.0077 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 1.5501 L22: 1.7002 REMARK 3 L33: 1.5128 L12: 0.0565 REMARK 3 L13: -0.4093 L23: 0.3545 REMARK 3 S TENSOR REMARK 3 S11: -0.0880 S12: 0.1020 S13: -0.1071 REMARK 3 S21: -0.0509 S22: 0.0760 S23: -0.1403 REMARK 3 S31: 0.2152 S32: 0.0246 S33: 0.0120 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 515 B 696 REMARK 3 ORIGIN FOR THE GROUP (A): -26.8580 39.6190 22.2040 REMARK 3 T TENSOR REMARK 3 T11: 0.1131 T22: 0.1631 REMARK 3 T33: 0.0868 T12: 0.0339 REMARK 3 T13: -0.0423 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.5206 L22: 1.8107 REMARK 3 L33: 1.0475 L12: -0.3317 REMARK 3 L13: 0.2971 L23: -0.2390 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.2449 S13: -0.2103 REMARK 3 S21: 0.0775 S22: -0.0199 S23: -0.0956 REMARK 3 S31: -0.0466 S32: 0.1386 S33: -0.0115 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 697 B 851 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3020 45.6030 7.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.0967 REMARK 3 T33: 0.0716 T12: 0.0329 REMARK 3 T13: -0.0244 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.8810 L22: 2.1236 REMARK 3 L33: 1.8017 L12: 0.3833 REMARK 3 L13: -0.3112 L23: -0.0982 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0610 S13: -0.0325 REMARK 3 S21: -0.3326 S22: 0.0022 S23: -0.0114 REMARK 3 S31: -0.0135 S32: 0.0942 S33: 0.0088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AKS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-12. REMARK 100 THE PDBE ID CODE IS EBI-51493. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.19 REMARK 200 RESOLUTION RANGE LOW (A) : 33.79 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.6 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.5 REMARK 200 R MERGE FOR SHELL (I) : 0.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.04000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.79000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.04000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.79000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 492 REMARK 465 GLU A 493 REMARK 465 ASP A 494 REMARK 465 GLU A 495 REMARK 465 ILE A 496 REMARK 465 GLU A 497 REMARK 465 SER A 498 REMARK 465 ALA A 499 REMARK 465 GLY A 500 REMARK 465 VAL A 501 REMARK 465 SER A 502 REMARK 465 ALA A 503 REMARK 465 SER A 504 REMARK 465 GLU A 505 REMARK 465 VAL A 506 REMARK 465 GLU A 507 REMARK 465 SER A 508 REMARK 465 SER A 509 REMARK 465 ALA A 510 REMARK 465 THR A 511 REMARK 465 LYS A 512 REMARK 465 GLN A 513 REMARK 465 GLY A 654 REMARK 465 ASN A 655 REMARK 465 TYR A 656 REMARK 465 ASP A 657 REMARK 465 ASP A 658 REMARK 465 ARG A 686 REMARK 465 PRO A 687 REMARK 465 THR A 688 REMARK 465 GLN A 689 REMARK 465 THR A 690 REMARK 465 SER A 691 REMARK 465 GLU A 692 REMARK 465 GLY A 693 REMARK 465 ASN A 718 REMARK 465 SER A 719 REMARK 465 ASN A 720 REMARK 465 GLU A 721 REMARK 465 SER A 722 REMARK 465 TRP A 723 REMARK 465 CYS A 724 REMARK 465 LEU A 725 REMARK 465 PRO A 726 REMARK 465 ALA A 727 REMARK 465 HIS A 746 REMARK 465 PHE A 747 REMARK 465 SER A 748 REMARK 465 ASN A 749 REMARK 465 TRP A 750 REMARK 465 GLY A 751 REMARK 465 GLY A 752 REMARK 465 ASN A 753 REMARK 465 CYS A 823 REMARK 465 ASP A 824 REMARK 465 PRO A 825 REMARK 465 GLU A 826 REMARK 465 VAL A 827 REMARK 465 VAL A 828 REMARK 465 GLU A 829 REMARK 465 GLU A 830 REMARK 465 PRO A 831 REMARK 465 GLU A 832 REMARK 465 ARG A 833 REMARK 465 CYS A 834 REMARK 465 GLY B 492 REMARK 465 GLU B 493 REMARK 465 ASP B 494 REMARK 465 GLU B 495 REMARK 465 ILE B 496 REMARK 465 GLU B 497 REMARK 465 SER B 498 REMARK 465 ALA B 499 REMARK 465 GLY B 500 REMARK 465 VAL B 501 REMARK 465 SER B 502 REMARK 465 ALA B 503 REMARK 465 SER B 504 REMARK 465 GLU B 505 REMARK 465 VAL B 506 REMARK 465 GLU B 507 REMARK 465 SER B 508 REMARK 465 SER B 509 REMARK 465 ALA B 510 REMARK 465 THR B 511 REMARK 465 LYS B 512 REMARK 465 GLN B 513 REMARK 465 LYS B 514 REMARK 465 VAL B 651 REMARK 465 ILE B 652 REMARK 465 ARG B 653 REMARK 465 GLY B 654 REMARK 465 ASN B 655 REMARK 465 TYR B 656 REMARK 465 ASP B 657 REMARK 465 ASP B 658 REMARK 465 VAL B 659 REMARK 465 GLN B 689 REMARK 465 THR B 690 REMARK 465 SER B 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 740 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2090 O HOH B 2091 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 548 -157.69 -165.08 REMARK 500 ASP B 548 -159.97 -169.47 REMARK 500 LEU B 835 -131.29 65.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AKT RELATED DB: PDB REMARK 900 PATG MACROCYCLASE IN COMPLEX WITH PEPTIDE DBREF 4AKS A 492 851 UNP Q52QJ1 Q52QJ1_PRODI 492 851 DBREF 4AKS B 492 851 UNP Q52QJ1 Q52QJ1_PRODI 492 851 SEQRES 1 A 360 GLY GLU ASP GLU ILE GLU SER ALA GLY VAL SER ALA SER SEQRES 2 A 360 GLU VAL GLU SER SER ALA THR LYS GLN LYS VAL ALA LEU SEQRES 3 A 360 HIS PRO HIS ASP LEU ASP GLU ARG ILE PRO GLY LEU ALA SEQRES 4 A 360 ASP LEU HIS ASN GLN THR LEU GLY ASP PRO GLN ILE THR SEQRES 5 A 360 ILE VAL ILE ILE ASP GLY ASP PRO ASP TYR THR LEU SER SEQRES 6 A 360 CYS PHE GLU GLY ALA GLU VAL SER LYS VAL PHE PRO TYR SEQRES 7 A 360 TRP HIS GLU PRO ALA GLU PRO ILE THR PRO GLU ASP TYR SEQRES 8 A 360 ALA ALA PHE GLN SER ILE ARG ASP GLN GLY LEU LYS GLY SEQRES 9 A 360 LYS GLU LYS GLU GLU ALA LEU GLU ALA VAL ILE PRO ASP SEQRES 10 A 360 THR LYS ASP ARG ILE VAL LEU ASN ASP HIS ALA CYS HIS SEQRES 11 A 360 VAL THR SER THR ILE VAL GLY GLN GLU HIS SER PRO VAL SEQRES 12 A 360 PHE GLY ILE ALA PRO ASN CYS ARG VAL ILE ASN MET PRO SEQRES 13 A 360 GLN ASP ALA VAL ILE ARG GLY ASN TYR ASP ASP VAL MET SEQRES 14 A 360 SER PRO LEU ASN LEU ALA ARG ALA ILE ASP LEU ALA LEU SEQRES 15 A 360 GLU LEU GLY ALA ASN ILE ILE HIS CYS ALA PHE CYS ARG SEQRES 16 A 360 PRO THR GLN THR SER GLU GLY GLU GLU ILE LEU VAL GLN SEQRES 17 A 360 ALA ILE LYS LYS CYS GLN ASP ASN ASN VAL LEU ILE VAL SEQRES 18 A 360 SER PRO THR GLY ASN ASN SER ASN GLU SER TRP CYS LEU SEQRES 19 A 360 PRO ALA VAL LEU PRO GLY THR LEU ALA VAL GLY ALA ALA SEQRES 20 A 360 LYS VAL ASP GLY THR PRO CYS HIS PHE SER ASN TRP GLY SEQRES 21 A 360 GLY ASN ASN THR LYS GLU GLY ILE LEU ALA PRO GLY GLU SEQRES 22 A 360 GLU ILE LEU GLY ALA GLN PRO CYS THR GLU GLU PRO VAL SEQRES 23 A 360 ARG LEU THR GLY THR SER MET ALA ALA PRO VAL MET THR SEQRES 24 A 360 GLY ILE SER ALA LEU LEU MET SER LEU GLN VAL GLN GLN SEQRES 25 A 360 GLY LYS PRO VAL ASP ALA GLU ALA VAL ARG THR ALA LEU SEQRES 26 A 360 LEU LYS THR ALA ILE PRO CYS ASP PRO GLU VAL VAL GLU SEQRES 27 A 360 GLU PRO GLU ARG CYS LEU ARG GLY PHE VAL ASN ILE PRO SEQRES 28 A 360 GLY ALA MET LYS VAL LEU PHE GLY GLN SEQRES 1 B 360 GLY GLU ASP GLU ILE GLU SER ALA GLY VAL SER ALA SER SEQRES 2 B 360 GLU VAL GLU SER SER ALA THR LYS GLN LYS VAL ALA LEU SEQRES 3 B 360 HIS PRO HIS ASP LEU ASP GLU ARG ILE PRO GLY LEU ALA SEQRES 4 B 360 ASP LEU HIS ASN GLN THR LEU GLY ASP PRO GLN ILE THR SEQRES 5 B 360 ILE VAL ILE ILE ASP GLY ASP PRO ASP TYR THR LEU SER SEQRES 6 B 360 CYS PHE GLU GLY ALA GLU VAL SER LYS VAL PHE PRO TYR SEQRES 7 B 360 TRP HIS GLU PRO ALA GLU PRO ILE THR PRO GLU ASP TYR SEQRES 8 B 360 ALA ALA PHE GLN SER ILE ARG ASP GLN GLY LEU LYS GLY SEQRES 9 B 360 LYS GLU LYS GLU GLU ALA LEU GLU ALA VAL ILE PRO ASP SEQRES 10 B 360 THR LYS ASP ARG ILE VAL LEU ASN ASP HIS ALA CYS HIS SEQRES 11 B 360 VAL THR SER THR ILE VAL GLY GLN GLU HIS SER PRO VAL SEQRES 12 B 360 PHE GLY ILE ALA PRO ASN CYS ARG VAL ILE ASN MET PRO SEQRES 13 B 360 GLN ASP ALA VAL ILE ARG GLY ASN TYR ASP ASP VAL MET SEQRES 14 B 360 SER PRO LEU ASN LEU ALA ARG ALA ILE ASP LEU ALA LEU SEQRES 15 B 360 GLU LEU GLY ALA ASN ILE ILE HIS CYS ALA PHE CYS ARG SEQRES 16 B 360 PRO THR GLN THR SER GLU GLY GLU GLU ILE LEU VAL GLN SEQRES 17 B 360 ALA ILE LYS LYS CYS GLN ASP ASN ASN VAL LEU ILE VAL SEQRES 18 B 360 SER PRO THR GLY ASN ASN SER ASN GLU SER TRP CYS LEU SEQRES 19 B 360 PRO ALA VAL LEU PRO GLY THR LEU ALA VAL GLY ALA ALA SEQRES 20 B 360 LYS VAL ASP GLY THR PRO CYS HIS PHE SER ASN TRP GLY SEQRES 21 B 360 GLY ASN ASN THR LYS GLU GLY ILE LEU ALA PRO GLY GLU SEQRES 22 B 360 GLU ILE LEU GLY ALA GLN PRO CYS THR GLU GLU PRO VAL SEQRES 23 B 360 ARG LEU THR GLY THR SER MET ALA ALA PRO VAL MET THR SEQRES 24 B 360 GLY ILE SER ALA LEU LEU MET SER LEU GLN VAL GLN GLN SEQRES 25 B 360 GLY LYS PRO VAL ASP ALA GLU ALA VAL ARG THR ALA LEU SEQRES 26 B 360 LEU LYS THR ALA ILE PRO CYS ASP PRO GLU VAL VAL GLU SEQRES 27 B 360 GLU PRO GLU ARG CYS LEU ARG GLY PHE VAL ASN ILE PRO SEQRES 28 B 360 GLY ALA MET LYS VAL LEU PHE GLY GLN FORMUL 3 HOH *224(H2 O) HELIX 1 1 GLY A 528 THR A 536 1 9 HELIX 2 2 LEU A 555 GLU A 559 5 5 HELIX 3 3 THR A 578 GLN A 591 1 14 HELIX 4 4 LYS A 594 ILE A 606 1 13 HELIX 5 5 THR A 609 GLY A 628 1 20 HELIX 6 6 ASP A 649 ILE A 652 5 4 HELIX 7 7 SER A 661 LEU A 675 1 15 HELIX 8 8 GLU A 694 ASN A 707 1 14 HELIX 9 9 GLY A 781 GLN A 803 1 23 HELIX 10 10 ASP A 808 ALA A 820 1 13 HELIX 11 11 ASN A 840 GLY A 850 1 11 HELIX 12 12 GLY B 528 THR B 536 1 9 HELIX 13 13 LEU B 555 GLU B 559 5 5 HELIX 14 14 THR B 578 GLN B 591 1 14 HELIX 15 15 LYS B 594 ILE B 606 1 13 HELIX 16 16 THR B 609 GLY B 628 1 20 HELIX 17 17 SER B 661 LEU B 675 1 15 HELIX 18 18 GLU B 694 ASN B 707 1 14 HELIX 19 19 GLY B 752 GLU B 757 1 6 HELIX 20 20 GLY B 781 GLN B 803 1 23 HELIX 21 21 ASP B 808 ALA B 820 1 13 HELIX 22 22 GLU B 830 LEU B 835 5 6 HELIX 23 23 ASN B 840 GLY B 850 1 11 SHEET 1 AA 7 VAL A 563 LYS A 565 0 SHEET 2 AA 7 ARG A 642 PRO A 647 1 O VAL A 643 N SER A 564 SHEET 3 AA 7 THR A 543 ASP A 548 1 O ILE A 544 N ILE A 644 SHEET 4 AA 7 ILE A 679 CYS A 682 1 O ILE A 679 N VAL A 545 SHEET 5 AA 7 LEU A 710 PRO A 714 1 O LEU A 710 N ILE A 680 SHEET 6 AA 7 THR A 732 ALA A 738 1 O LEU A 733 N SER A 713 SHEET 7 AA 7 GLY A 758 PRO A 762 1 O ILE A 759 N GLY A 736 SHEET 1 AB 2 ILE A 766 GLY A 768 0 SHEET 2 AB 2 VAL A 777 LEU A 779 -1 O VAL A 777 N GLY A 768 SHEET 1 BA 7 VAL B 563 LYS B 565 0 SHEET 2 BA 7 ARG B 642 PRO B 647 1 O VAL B 643 N SER B 564 SHEET 3 BA 7 THR B 543 ASP B 548 1 O ILE B 544 N ILE B 644 SHEET 4 BA 7 ILE B 679 CYS B 682 1 O ILE B 679 N VAL B 545 SHEET 5 BA 7 LEU B 710 PRO B 714 1 O LEU B 710 N ILE B 680 SHEET 6 BA 7 LEU B 733 ALA B 738 1 O LEU B 733 N SER B 713 SHEET 7 BA 7 GLY B 758 PRO B 762 1 O ILE B 759 N GLY B 736 SHEET 1 BB 2 ARG B 686 PRO B 687 0 SHEET 2 BB 2 CYS B 724 LEU B 725 -1 O LEU B 725 N ARG B 686 SHEET 1 BC 2 ILE B 766 GLN B 770 0 SHEET 2 BC 2 THR B 773 LEU B 779 -1 O THR B 773 N GLN B 770 SSBOND 1 CYS B 685 CYS B 724 1555 1555 2.04 SSBOND 2 CYS B 823 CYS B 834 1555 1555 2.05 CISPEP 1 LEU B 725 PRO B 726 0 -0.43 CRYST1 132.080 67.580 97.340 90.00 115.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007571 0.000000 0.003532 0.00000 SCALE2 0.000000 0.014797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011336 0.00000