HEADER TRANSPORT PROTEIN 29-FEB-12 4AKV TITLE CRYSTAL STRUCTURE OF HUMAN SORTING NEXIN 33 (SNX33) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-33; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PH-BAR DOMAIN, RESIDUES 212-574; COMPND 5 SYNONYM: SORTING NEXIN 33, SH3 AND PX DOMAIN-CONTAINING PROTEIN 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS TRANSPORT PROTEIN, ORGANELLE BIOGENESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.OBERHOLZER,D.S.FROESE,T.KROJER,L.SHRESTHA,P.FILIPPAKOPOULOS, AUTHOR 2 J.R.C.MUNIZ,F.VON DELFT,C.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA, AUTHOR 3 W.W.YUE REVDAT 4 08-MAY-24 4AKV 1 REMARK REVDAT 3 24-JAN-18 4AKV 1 JRNL REVDAT 2 05-DEC-12 4AKV 1 AUTHOR JRNL REVDAT 1 01-AUG-12 4AKV 0 JRNL AUTH A.OBERHOLZER,D.S.FROESE,T.KROJER,L.SHRESTHA, JRNL AUTH 2 P.FILIPPAKOPOULOS,J.R.C.MUNIZ,F.VON DELFT,C.ARROWSMITH, JRNL AUTH 3 J.WEIGELT,A.EDWARDS,C.BOUNTRA,W.W.YUE JRNL TITL STRUCTURE OF HUMAN SORTING NEXIN 33 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.4508 - 5.5139 1.00 2947 149 0.1992 0.2425 REMARK 3 2 5.5139 - 4.3768 1.00 2794 133 0.1684 0.2268 REMARK 3 3 4.3768 - 3.8236 1.00 2728 160 0.1794 0.2324 REMARK 3 4 3.8236 - 3.4741 1.00 2713 146 0.2153 0.2839 REMARK 3 5 3.4741 - 3.2251 1.00 2701 154 0.2469 0.2908 REMARK 3 6 3.2251 - 3.0349 1.00 2711 150 0.2589 0.3426 REMARK 3 7 3.0349 - 2.8829 1.00 2689 146 0.2900 0.3737 REMARK 3 8 2.8829 - 2.7574 1.00 2662 155 0.3090 0.4047 REMARK 3 9 2.7574 - 2.6513 0.98 2632 125 0.3491 0.4020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 52.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.39600 REMARK 3 B22 (A**2) : 4.10520 REMARK 3 B33 (A**2) : 6.29080 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5877 REMARK 3 ANGLE : 0.614 7902 REMARK 3 CHIRALITY : 0.047 808 REMARK 3 PLANARITY : 0.003 1025 REMARK 3 DIHEDRAL : 11.850 2215 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 211:265) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5948 -41.6518 -20.6322 REMARK 3 T TENSOR REMARK 3 T11: 0.9638 T22: 0.6786 REMARK 3 T33: 0.6043 T12: 0.0212 REMARK 3 T13: 0.1398 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 3.8045 L22: 2.6814 REMARK 3 L33: 6.2123 L12: -0.2365 REMARK 3 L13: 1.7827 L23: 1.3833 REMARK 3 S TENSOR REMARK 3 S11: 0.1649 S12: -0.6459 S13: -0.2186 REMARK 3 S21: 0.7593 S22: -0.0956 S23: 0.1323 REMARK 3 S31: -0.5150 S32: -1.0760 S33: -0.0661 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 266:371) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2917 -48.6943 -21.6383 REMARK 3 T TENSOR REMARK 3 T11: 0.7613 T22: 0.4932 REMARK 3 T33: 0.6622 T12: 0.0730 REMARK 3 T13: -0.0316 T23: 0.0731 REMARK 3 L TENSOR REMARK 3 L11: 4.3401 L22: 3.9653 REMARK 3 L33: 3.4567 L12: 0.5201 REMARK 3 L13: 1.1677 L23: 0.2307 REMARK 3 S TENSOR REMARK 3 S11: 0.2842 S12: -0.4393 S13: -0.8941 REMARK 3 S21: 0.7613 S22: -0.0316 S23: -0.2525 REMARK 3 S31: 0.7180 S32: -0.0429 S33: -0.2868 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 372:502) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6800 -23.9135 -25.7457 REMARK 3 T TENSOR REMARK 3 T11: 0.4494 T22: 0.5382 REMARK 3 T33: 0.5231 T12: 0.0918 REMARK 3 T13: 0.0101 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.0078 L22: 7.0170 REMARK 3 L33: 3.5148 L12: 3.6669 REMARK 3 L13: 2.4176 L23: 4.3279 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.3092 S13: -0.2853 REMARK 3 S21: 0.2803 S22: 0.4069 S23: -0.5245 REMARK 3 S31: 0.3972 S32: 0.5586 S33: -0.4830 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 503:573) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2419 -31.4744 -32.2554 REMARK 3 T TENSOR REMARK 3 T11: 0.4768 T22: 0.4760 REMARK 3 T33: 0.4697 T12: 0.0181 REMARK 3 T13: 0.0360 T23: 0.0960 REMARK 3 L TENSOR REMARK 3 L11: 1.7733 L22: 6.1670 REMARK 3 L33: 2.9130 L12: 2.1742 REMARK 3 L13: 1.6134 L23: 3.7277 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: -0.0421 S13: 0.3382 REMARK 3 S21: 0.3118 S22: -0.4189 S23: 1.1043 REMARK 3 S31: 0.3791 S32: 0.0293 S33: 0.4414 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 207:350) REMARK 3 ORIGIN FOR THE GROUP (A): 30.5100 27.0330 -26.1562 REMARK 3 T TENSOR REMARK 3 T11: 0.4622 T22: 0.4889 REMARK 3 T33: 0.4724 T12: -0.0294 REMARK 3 T13: -0.0775 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 3.1903 L22: 3.1229 REMARK 3 L33: 7.0031 L12: 0.1262 REMARK 3 L13: 0.3693 L23: 1.8609 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.2693 S13: 0.2792 REMARK 3 S21: -0.4387 S22: -0.0840 S23: -0.0928 REMARK 3 S31: -0.9724 S32: 0.1365 S33: 0.2713 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 351:369) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5131 33.1202 -4.5215 REMARK 3 T TENSOR REMARK 3 T11: 1.0480 T22: 0.9275 REMARK 3 T33: 0.6910 T12: -0.1655 REMARK 3 T13: -0.2545 T23: 0.1790 REMARK 3 L TENSOR REMARK 3 L11: 9.0440 L22: 6.1404 REMARK 3 L33: 3.9360 L12: -1.3539 REMARK 3 L13: -4.7927 L23: 3.5909 REMARK 3 S TENSOR REMARK 3 S11: -0.2104 S12: 0.0500 S13: -0.0823 REMARK 3 S21: 0.7321 S22: -0.1720 S23: -0.0623 REMARK 3 S31: -0.2237 S32: 1.3017 S33: 0.3845 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 370:496) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2203 -1.6837 -22.7471 REMARK 3 T TENSOR REMARK 3 T11: 0.3670 T22: 0.5541 REMARK 3 T33: 0.5238 T12: 0.0327 REMARK 3 T13: 0.0427 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.9466 L22: 4.7983 REMARK 3 L33: 2.5858 L12: 3.4388 REMARK 3 L13: 2.1560 L23: 2.7081 REMARK 3 S TENSOR REMARK 3 S11: -0.1406 S12: 0.4378 S13: -0.1379 REMARK 3 S21: -0.0504 S22: 0.3663 S23: -0.3115 REMARK 3 S31: 0.0721 S32: 0.5171 S33: -0.2319 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 497:573) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2436 14.1901 -11.1737 REMARK 3 T TENSOR REMARK 3 T11: 0.4435 T22: 0.6149 REMARK 3 T33: 0.4494 T12: 0.0168 REMARK 3 T13: 0.0433 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.8052 L22: 5.1073 REMARK 3 L33: 3.0047 L12: 2.5217 REMARK 3 L13: 1.7086 L23: 2.3283 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: 0.0041 S13: 0.4503 REMARK 3 S21: 0.0675 S22: 0.0227 S23: 0.4076 REMARK 3 S31: -0.3372 S32: 0.3401 S33: 0.2301 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 73 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 216.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.88000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.32500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 108.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 108.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 SER A 196 REMARK 465 SER A 197 REMARK 465 GLY A 198 REMARK 465 VAL A 199 REMARK 465 ASP A 200 REMARK 465 LEU A 201 REMARK 465 GLY A 202 REMARK 465 THR A 203 REMARK 465 GLU A 204 REMARK 465 ASN A 205 REMARK 465 LEU A 206 REMARK 465 TYR A 207 REMARK 465 PHE A 208 REMARK 465 GLN A 209 REMARK 465 SER A 210 REMARK 465 THR A 238 REMARK 465 LYS A 239 REMARK 465 GLN A 240 REMARK 465 THR A 241 REMARK 465 LYS A 242 REMARK 465 PHE A 243 REMARK 465 LYS A 244 REMARK 465 GLY A 245 REMARK 465 ILE A 246 REMARK 465 LYS A 247 REMARK 465 SER A 248 REMARK 465 TYR A 249 REMARK 465 ALA A 294 REMARK 465 THR A 295 REMARK 465 GLY A 296 REMARK 465 ARG A 297 REMARK 465 PHE A 298 REMARK 465 GLU A 299 REMARK 465 LEU A 574 REMARK 465 MET B 189 REMARK 465 HIS B 190 REMARK 465 HIS B 191 REMARK 465 HIS B 192 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 SER B 196 REMARK 465 SER B 197 REMARK 465 GLY B 198 REMARK 465 VAL B 199 REMARK 465 ASP B 200 REMARK 465 LEU B 201 REMARK 465 GLY B 202 REMARK 465 THR B 203 REMARK 465 GLU B 204 REMARK 465 ASN B 205 REMARK 465 LEU B 206 REMARK 465 PRO B 237 REMARK 465 THR B 238 REMARK 465 LYS B 239 REMARK 465 GLN B 240 REMARK 465 THR B 241 REMARK 465 LYS B 242 REMARK 465 PHE B 243 REMARK 465 LYS B 244 REMARK 465 GLY B 245 REMARK 465 ILE B 246 REMARK 465 LYS B 247 REMARK 465 ALA B 294 REMARK 465 THR B 295 REMARK 465 GLY B 296 REMARK 465 ARG B 297 REMARK 465 PHE B 298 REMARK 465 GLU B 299 REMARK 465 GLU B 300 REMARK 465 LEU B 574 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 ASP A 301 CG OD1 OD2 REMARK 470 ARG A 519 CD NE CZ NH1 NH2 REMARK 470 ASN A 573 CG OD1 ND2 REMARK 470 TYR B 207 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 367 CG CD OE1 OE2 REMARK 470 ASN B 573 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 B 602 O HOH B 2034 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 301 -6.45 66.72 REMARK 500 ILE A 303 -17.45 75.81 REMARK 500 ASP A 464 -51.32 -138.02 REMARK 500 PHE B 208 -76.60 -120.89 REMARK 500 LEU B 336 -63.23 -104.57 REMARK 500 ALA B 356 -175.92 -171.70 REMARK 500 SER B 357 -70.91 -130.10 REMARK 500 PHE B 358 71.51 58.66 REMARK 500 ASP B 431 77.66 -155.02 REMARK 500 ASP B 464 -49.00 -130.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 603 DBREF 4AKV A 212 574 UNP Q8WV41 SNX33_HUMAN 212 574 DBREF 4AKV B 212 574 UNP Q8WV41 SNX33_HUMAN 212 574 SEQADV 4AKV MET A 189 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS A 190 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS A 191 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS A 192 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS A 193 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS A 194 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS A 195 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV SER A 196 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV SER A 197 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLY A 198 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV VAL A 199 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV ASP A 200 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV LEU A 201 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLY A 202 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV THR A 203 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLU A 204 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV ASN A 205 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV LEU A 206 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV TYR A 207 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV PHE A 208 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLN A 209 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV SER A 210 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV MET A 211 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV MET B 189 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS B 190 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS B 191 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS B 192 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS B 193 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS B 194 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV HIS B 195 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV SER B 196 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV SER B 197 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLY B 198 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV VAL B 199 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV ASP B 200 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV LEU B 201 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLY B 202 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV THR B 203 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLU B 204 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV ASN B 205 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV LEU B 206 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV TYR B 207 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV PHE B 208 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV GLN B 209 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV SER B 210 UNP Q8WV41 EXPRESSION TAG SEQADV 4AKV MET B 211 UNP Q8WV41 EXPRESSION TAG SEQRES 1 A 386 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 386 GLY THR GLU ASN LEU TYR PHE GLN SER MET TYR SER ILE SEQRES 3 A 386 GLU MET GLY PRO ARG GLY PRO GLN TRP LYS ALA ASN PRO SEQRES 4 A 386 HIS PRO PHE ALA CYS SER VAL GLU ASP PRO THR LYS GLN SEQRES 5 A 386 THR LYS PHE LYS GLY ILE LYS SER TYR ILE SER TYR LYS SEQRES 6 A 386 LEU THR PRO THR HIS ALA ALA SER PRO VAL TYR ARG ARG SEQRES 7 A 386 TYR LYS HIS PHE ASP TRP LEU TYR ASN ARG LEU LEU HIS SEQRES 8 A 386 LYS PHE THR VAL ILE SER VAL PRO HIS LEU PRO GLU LYS SEQRES 9 A 386 GLN ALA THR GLY ARG PHE GLU GLU ASP PHE ILE GLU LYS SEQRES 10 A 386 ARG LYS ARG ARG LEU ILE LEU TRP MET ASP HIS MET THR SEQRES 11 A 386 SER HIS PRO VAL LEU SER GLN TYR GLU GLY PHE GLN HIS SEQRES 12 A 386 PHE LEU SER CYS LEU ASP ASP LYS GLN TRP LYS MET GLY SEQRES 13 A 386 LYS ARG ARG ALA GLU LYS ASP GLU MET VAL GLY ALA SER SEQRES 14 A 386 PHE LEU LEU THR PHE GLN ILE PRO THR GLU HIS GLN ASP SEQRES 15 A 386 LEU GLN ASP VAL GLU ASP ARG VAL ASP THR PHE LYS ALA SEQRES 16 A 386 PHE SER LYS LYS MET ASP ASP SER VAL LEU GLN LEU SER SEQRES 17 A 386 THR VAL ALA SER GLU LEU VAL ARG LYS HIS VAL GLY GLY SEQRES 18 A 386 PHE ARG LYS GLU PHE GLN LYS LEU GLY SER ALA PHE GLN SEQRES 19 A 386 ALA ILE SER HIS SER PHE GLN MET ASP PRO PRO PHE CYS SEQRES 20 A 386 SER GLU ALA LEU ASN SER ALA ILE SER HIS THR GLY ARG SEQRES 21 A 386 THR TYR GLU ALA ILE GLY GLU MET PHE ALA GLU GLN PRO SEQRES 22 A 386 LYS ASN ASP LEU PHE GLN MET LEU ASP THR LEU SER LEU SEQRES 23 A 386 TYR GLN GLY LEU LEU SER ASN PHE PRO ASP ILE ILE HIS SEQRES 24 A 386 LEU GLN LYS GLY ALA PHE ALA LYS VAL LYS GLU SER GLN SEQRES 25 A 386 ARG MET SER ASP GLU GLY ARG MET VAL GLN ASP GLU ALA SEQRES 26 A 386 ASP GLY ILE ARG ARG ARG CYS ARG VAL VAL GLY PHE ALA SEQRES 27 A 386 LEU GLN ALA GLU MET ASN HIS PHE HIS GLN ARG ARG GLU SEQRES 28 A 386 LEU ASP PHE LYS HIS MET MET GLN ASN TYR LEU ARG GLN SEQRES 29 A 386 GLN ILE LEU PHE TYR GLN ARG VAL GLY GLN GLN LEU GLU SEQRES 30 A 386 LYS THR LEU ARG MET TYR ASP ASN LEU SEQRES 1 B 386 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 386 GLY THR GLU ASN LEU TYR PHE GLN SER MET TYR SER ILE SEQRES 3 B 386 GLU MET GLY PRO ARG GLY PRO GLN TRP LYS ALA ASN PRO SEQRES 4 B 386 HIS PRO PHE ALA CYS SER VAL GLU ASP PRO THR LYS GLN SEQRES 5 B 386 THR LYS PHE LYS GLY ILE LYS SER TYR ILE SER TYR LYS SEQRES 6 B 386 LEU THR PRO THR HIS ALA ALA SER PRO VAL TYR ARG ARG SEQRES 7 B 386 TYR LYS HIS PHE ASP TRP LEU TYR ASN ARG LEU LEU HIS SEQRES 8 B 386 LYS PHE THR VAL ILE SER VAL PRO HIS LEU PRO GLU LYS SEQRES 9 B 386 GLN ALA THR GLY ARG PHE GLU GLU ASP PHE ILE GLU LYS SEQRES 10 B 386 ARG LYS ARG ARG LEU ILE LEU TRP MET ASP HIS MET THR SEQRES 11 B 386 SER HIS PRO VAL LEU SER GLN TYR GLU GLY PHE GLN HIS SEQRES 12 B 386 PHE LEU SER CYS LEU ASP ASP LYS GLN TRP LYS MET GLY SEQRES 13 B 386 LYS ARG ARG ALA GLU LYS ASP GLU MET VAL GLY ALA SER SEQRES 14 B 386 PHE LEU LEU THR PHE GLN ILE PRO THR GLU HIS GLN ASP SEQRES 15 B 386 LEU GLN ASP VAL GLU ASP ARG VAL ASP THR PHE LYS ALA SEQRES 16 B 386 PHE SER LYS LYS MET ASP ASP SER VAL LEU GLN LEU SER SEQRES 17 B 386 THR VAL ALA SER GLU LEU VAL ARG LYS HIS VAL GLY GLY SEQRES 18 B 386 PHE ARG LYS GLU PHE GLN LYS LEU GLY SER ALA PHE GLN SEQRES 19 B 386 ALA ILE SER HIS SER PHE GLN MET ASP PRO PRO PHE CYS SEQRES 20 B 386 SER GLU ALA LEU ASN SER ALA ILE SER HIS THR GLY ARG SEQRES 21 B 386 THR TYR GLU ALA ILE GLY GLU MET PHE ALA GLU GLN PRO SEQRES 22 B 386 LYS ASN ASP LEU PHE GLN MET LEU ASP THR LEU SER LEU SEQRES 23 B 386 TYR GLN GLY LEU LEU SER ASN PHE PRO ASP ILE ILE HIS SEQRES 24 B 386 LEU GLN LYS GLY ALA PHE ALA LYS VAL LYS GLU SER GLN SEQRES 25 B 386 ARG MET SER ASP GLU GLY ARG MET VAL GLN ASP GLU ALA SEQRES 26 B 386 ASP GLY ILE ARG ARG ARG CYS ARG VAL VAL GLY PHE ALA SEQRES 27 B 386 LEU GLN ALA GLU MET ASN HIS PHE HIS GLN ARG ARG GLU SEQRES 28 B 386 LEU ASP PHE LYS HIS MET MET GLN ASN TYR LEU ARG GLN SEQRES 29 B 386 GLN ILE LEU PHE TYR GLN ARG VAL GLY GLN GLN LEU GLU SEQRES 30 B 386 LYS THR LEU ARG MET TYR ASP ASN LEU HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 HOH *62(H2 O) HELIX 1 1 ARG A 266 PHE A 281 1 16 HELIX 2 2 GLU A 304 SER A 319 1 16 HELIX 3 3 VAL A 322 GLN A 325 5 4 HELIX 4 4 TYR A 326 SER A 334 1 9 HELIX 5 5 ASP A 338 LYS A 350 1 13 HELIX 6 6 VAL A 354 THR A 361 5 8 HELIX 7 7 ASP A 370 GLY A 408 1 39 HELIX 8 8 GLY A 408 PHE A 428 1 21 HELIX 9 9 ASP A 431 CYS A 435 5 5 HELIX 10 10 SER A 436 GLN A 460 1 25 HELIX 11 11 PRO A 461 ASN A 463 5 3 HELIX 12 12 ASP A 464 GLU A 505 1 42 HELIX 13 13 VAL A 509 ARG A 569 1 61 HELIX 14 14 MET A 570 ASP A 572 5 3 HELIX 15 15 ARG B 266 PHE B 281 1 16 HELIX 16 16 ASP B 301 SER B 319 1 19 HELIX 17 17 VAL B 322 GLN B 325 5 4 HELIX 18 18 TYR B 326 CYS B 335 1 10 HELIX 19 19 ASP B 337 ALA B 348 1 12 HELIX 20 20 ASP B 370 GLY B 408 1 39 HELIX 21 21 GLY B 408 PHE B 428 1 21 HELIX 22 22 ASP B 431 CYS B 435 5 5 HELIX 23 23 SER B 436 GLU B 459 1 24 HELIX 24 24 ASP B 464 GLY B 506 1 43 HELIX 25 25 VAL B 509 ARG B 569 1 61 HELIX 26 26 MET B 570 ASP B 572 5 3 SHEET 1 AA 2 ILE A 214 GLU A 215 0 SHEET 2 AA 2 GLN A 222 TRP A 223 -1 O GLN A 222 N GLU A 215 SHEET 1 AB 3 CYS A 232 GLU A 235 0 SHEET 2 AB 3 TYR A 252 PRO A 256 -1 O LYS A 253 N GLU A 235 SHEET 3 AB 3 VAL A 263 ARG A 265 -1 O VAL A 263 N LEU A 254 SHEET 1 BA 3 GLN B 222 TRP B 223 0 SHEET 2 BA 3 SER B 213 GLU B 215 -1 O GLU B 215 N GLN B 222 SHEET 3 BA 3 LEU B 359 LEU B 360 1 O LEU B 359 N ILE B 214 SHEET 1 BB 3 CYS B 232 GLU B 235 0 SHEET 2 BB 3 TYR B 252 PRO B 256 -1 O LYS B 253 N GLU B 235 SHEET 3 BB 3 VAL B 263 ARG B 265 -1 O VAL B 263 N LEU B 254 CISPEP 1 ASP A 572 ASN A 573 0 -1.30 CISPEP 2 ASP B 351 GLU B 352 0 15.77 CISPEP 3 GLU B 352 MET B 353 0 21.09 SITE 1 AC1 3 ARG A 266 TYR A 267 LYS A 268 SITE 1 AC2 3 HIS A 368 ARG A 517 ARG A 521 SITE 1 AC3 3 HIS A 269 TRP A 341 LYS A 342 SITE 1 AC4 3 ARG B 517 ARG B 518 ARG B 521 SITE 1 AC5 4 TYR B 249 ARG B 266 LYS B 268 HOH B2034 SITE 1 AC6 4 HIS B 269 TRP B 341 LYS B 342 LYS B 345 CRYST1 68.650 216.210 58.200 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014567 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017182 0.00000