HEADER TRANSPORT PROTEIN 29-FEB-12 4AKZ TITLE CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV SECRETION SYSTEM PROTEIN VIRB8; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 FRAGMENT: RESIDUES 97-234; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA SUIS; SOURCE 3 ORGANISM_TAXID: 29461; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET24D KEYWDS TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.COINCON,M.A.SMITH,J.SYGUSCH,C.BARON REVDAT 2 08-MAY-24 4AKZ 1 ATOM REVDAT 1 05-SEP-12 4AKZ 0 JRNL AUTH M.A.SMITH,M.COINCON,A.PASCHOS,B.JOLICOEUR,P.LAVALLEE, JRNL AUTH 2 J.SYGUSCH,C.BARON JRNL TITL IDENTIFICATION OF THE BINDING SITE OF BRUCELLA VIRB8 JRNL TITL 2 INTERACTION INHIBITORS. JRNL REF CHEM.BIOL. V. 19 1041 2012 JRNL REFN ISSN 1074-5521 JRNL PMID 22921071 JRNL DOI 10.1016/J.CHEMBIOL.2012.07.007 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 48074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.500 REMARK 3 FREE R VALUE TEST SET COUNT : 3605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9368 - 6.5887 0.94 1771 143 0.2685 0.2790 REMARK 3 2 6.5887 - 5.2613 1.00 1805 146 0.2022 0.2275 REMARK 3 3 5.2613 - 4.6056 1.00 1791 146 0.1505 0.1396 REMARK 3 4 4.6056 - 4.1887 1.00 1766 143 0.1312 0.1572 REMARK 3 5 4.1887 - 3.8909 1.00 1775 144 0.1463 0.1686 REMARK 3 6 3.8909 - 3.6630 1.00 1755 142 0.1587 0.1738 REMARK 3 7 3.6630 - 3.4805 1.00 1763 143 0.1558 0.1892 REMARK 3 8 3.4805 - 3.3298 1.00 1741 141 0.1708 0.2108 REMARK 3 9 3.3298 - 3.2021 1.00 1758 143 0.1758 0.2090 REMARK 3 10 3.2021 - 3.0920 1.00 1755 142 0.1847 0.2368 REMARK 3 11 3.0920 - 2.9957 1.00 1741 141 0.1956 0.2175 REMARK 3 12 2.9957 - 2.9103 1.00 1747 142 0.1986 0.2640 REMARK 3 13 2.9103 - 2.8339 1.00 1735 140 0.2066 0.2269 REMARK 3 14 2.8339 - 2.7650 1.00 1743 142 0.1966 0.2304 REMARK 3 15 2.7650 - 2.7023 1.00 1738 141 0.1975 0.2364 REMARK 3 16 2.7023 - 2.6449 1.00 1737 141 0.2024 0.2338 REMARK 3 17 2.6449 - 2.5921 1.00 1727 140 0.1951 0.2424 REMARK 3 18 2.5921 - 2.5433 1.00 1735 140 0.2061 0.2318 REMARK 3 19 2.5433 - 2.4979 1.00 1738 141 0.1973 0.2530 REMARK 3 20 2.4979 - 2.4557 1.00 1724 140 0.2013 0.2544 REMARK 3 21 2.4557 - 2.4161 1.00 1758 142 0.2137 0.3005 REMARK 3 22 2.4161 - 2.3790 1.00 1718 140 0.2278 0.2604 REMARK 3 23 2.3790 - 2.3441 1.00 1717 139 0.2181 0.2909 REMARK 3 24 2.3441 - 2.3111 0.96 1658 134 0.2196 0.2660 REMARK 3 25 2.3111 - 2.2799 0.89 1538 125 0.2240 0.2415 REMARK 3 26 2.2799 - 2.2504 0.60 1035 84 0.2127 0.2308 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 86.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12280 REMARK 3 B22 (A**2) : 2.12880 REMARK 3 B33 (A**2) : -8.23790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5471 REMARK 3 ANGLE : 1.022 7435 REMARK 3 CHIRALITY : 0.079 818 REMARK 3 PLANARITY : 0.005 940 REMARK 3 DIHEDRAL : 16.637 1913 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48076 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 25.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M K2HPO4, 0.04 M NA2HPO4 AND 1% REMARK 280 DMSO, PH 7.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 99.22000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.61000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.80500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 99.22000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.41500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.41500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.22000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.80500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 99.22000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.61000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 99.22000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.61000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 99.22000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 77.41500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 25.80500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 99.22000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 25.80500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 77.41500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 99.22000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 99.22000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.61000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2019 LIES ON A SPECIAL POSITION. REMARK 375 HOH C2048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN B 188 REMARK 465 GLU B 189 REMARK 465 THR B 190 REMARK 465 GLY B 191 REMARK 465 ASN C 188 REMARK 465 GLU C 189 REMARK 465 THR C 190 REMARK 465 GLY C 191 REMARK 465 ASN D 188 REMARK 465 GLU D 189 REMARK 465 THR D 190 REMARK 465 GLY D 191 REMARK 465 ASP D 192 REMARK 465 ASN E 188 REMARK 465 GLU E 189 REMARK 465 THR E 190 REMARK 465 GLY E 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 148 O HOH C 2069 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2077 O HOH B 2077 5554 0.46 REMARK 500 CG MET D 131 O HOH A 2189 5555 2.09 REMARK 500 O HOH B 2105 O HOH B 2105 5554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 189 176.49 151.86 REMARK 500 LYS D 173 53.83 -68.30 REMARK 500 ASN D 208 108.38 -47.95 REMARK 500 TRP E 119 -37.88 -36.38 REMARK 500 LYS E 173 24.80 -79.73 REMARK 500 LYS E 185 -155.89 -116.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2092 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH A2093 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A2104 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2133 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2139 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A2152 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2153 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2045 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B2066 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B2125 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH C2061 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH C2068 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH C2071 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH C2072 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C2082 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C2087 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH C2096 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH C2104 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH D2065 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH D2069 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH D2082 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH D2093 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH D2094 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH D2095 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH D2109 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH D2125 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH E2027 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH E2044 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH E2054 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH E2120 DISTANCE = 8.86 ANGSTROMS REMARK 525 HOH E2121 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH E2122 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH E2123 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH E2124 DISTANCE = 8.07 ANGSTROMS REMARK 525 HOH E2125 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH E2126 DISTANCE = 7.87 ANGSTROMS REMARK 525 HOH E2127 DISTANCE = 8.88 ANGSTROMS REMARK 525 HOH E2130 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH E2131 DISTANCE = 9.33 ANGSTROMS REMARK 525 HOH E2132 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH E2133 DISTANCE = 7.43 ANGSTROMS REMARK 525 HOH E2134 DISTANCE = 8.10 ANGSTROMS REMARK 525 HOH E2135 DISTANCE = 9.19 ANGSTROMS REMARK 525 HOH E2136 DISTANCE = 8.03 ANGSTROMS REMARK 525 HOH E2137 DISTANCE = 9.82 ANGSTROMS REMARK 525 HOH E2138 DISTANCE = 9.88 ANGSTROMS REMARK 525 HOH E2139 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH E2140 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH E2141 DISTANCE = 9.65 ANGSTROMS REMARK 525 HOH E2142 DISTANCE = 9.58 ANGSTROMS REMARK 525 HOH E2143 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH E2144 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH E2145 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH E2146 DISTANCE = 9.82 ANGSTROMS REMARK 525 HOH E2147 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH E2148 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH E2149 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH E2150 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH E2151 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH E2152 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH E2153 DISTANCE = 9.85 ANGSTROMS REMARK 525 HOH E2154 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH E2156 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH E2157 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH E2159 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH E2160 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH E2161 DISTANCE = 8.05 ANGSTROMS REMARK 525 HOH E2163 DISTANCE = 9.44 ANGSTROMS REMARK 525 HOH E2165 DISTANCE = 8.58 ANGSTROMS REMARK 525 HOH E2166 DISTANCE = 7.57 ANGSTROMS REMARK 525 HOH E2168 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH E2169 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH E2170 DISTANCE = 9.54 ANGSTROMS REMARK 525 HOH E2171 DISTANCE = 8.47 ANGSTROMS REMARK 525 HOH E2172 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH E2174 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH E2177 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH E2178 DISTANCE = 8.80 ANGSTROMS REMARK 525 HOH E2180 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH E2181 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH E2182 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH E2183 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH E2184 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH E2185 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH E2186 DISTANCE = 8.00 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BHM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS REMARK 900 RELATED ID: 4AKY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VIRB8 FROM BRUCELLA SUIS IN COMPLEX WITH REMARK 900 INTERACTION INHIBITOR 2-(BUTYLAMINO)-8- QUINOLINOL DBREF 4AKZ A 97 234 UNP Q7CEG3 VIRB8_BRUSU 97 234 DBREF 4AKZ B 97 234 UNP Q7CEG3 VIRB8_BRUSU 97 234 DBREF 4AKZ C 97 234 UNP Q7CEG3 VIRB8_BRUSU 97 234 DBREF 4AKZ D 97 234 UNP Q7CEG3 VIRB8_BRUSU 97 234 DBREF 4AKZ E 97 234 UNP Q7CEG3 VIRB8_BRUSU 97 234 SEQRES 1 A 138 SER TYR ASP THR VAL MET ASP LYS TYR TRP LEU SER GLN SEQRES 2 A 138 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 A 138 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 A 138 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 A 138 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 A 138 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 A 138 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 A 138 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 A 138 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 A 138 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 A 138 THR SER TYR ARG VAL ASP PRO GLU SEQRES 1 B 138 SER TYR ASP THR VAL MET ASP LYS TYR TRP LEU SER GLN SEQRES 2 B 138 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 B 138 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 B 138 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 B 138 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 B 138 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 B 138 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 B 138 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 B 138 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 B 138 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 B 138 THR SER TYR ARG VAL ASP PRO GLU SEQRES 1 C 138 SER TYR ASP THR VAL MET ASP LYS TYR TRP LEU SER GLN SEQRES 2 C 138 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 C 138 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 C 138 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 C 138 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 C 138 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 C 138 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 C 138 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 C 138 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 C 138 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 C 138 THR SER TYR ARG VAL ASP PRO GLU SEQRES 1 D 138 SER TYR ASP THR VAL MET ASP LYS TYR TRP LEU SER GLN SEQRES 2 D 138 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 D 138 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 D 138 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 D 138 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 D 138 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 D 138 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 D 138 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 D 138 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 D 138 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 D 138 THR SER TYR ARG VAL ASP PRO GLU SEQRES 1 E 138 SER TYR ASP THR VAL MET ASP LYS TYR TRP LEU SER GLN SEQRES 2 E 138 TYR VAL ILE ALA ARG GLU THR TYR ASP TRP TYR THR LEU SEQRES 3 E 138 GLN LYS ASP TYR GLU THR VAL GLY MET LEU SER SER PRO SEQRES 4 E 138 SER GLU GLY GLN SER TYR ALA SER GLN PHE GLN GLY ASP SEQRES 5 E 138 LYS ALA LEU ASP LYS GLN TYR GLY SER ASN VAL ARG THR SEQRES 6 E 138 SER VAL THR ILE VAL SER ILE VAL PRO ASN GLY LYS GLY SEQRES 7 E 138 ILE GLY THR VAL ARG PHE ALA LYS THR THR LYS ARG THR SEQRES 8 E 138 ASN GLU THR GLY ASP GLY GLU THR THR HIS TRP ILE ALA SEQRES 9 E 138 THR ILE GLY TYR GLN TYR VAL ASN PRO SER LEU MET SER SEQRES 10 E 138 GLU SER ALA ARG LEU THR ASN PRO LEU GLY PHE ASN VAL SEQRES 11 E 138 THR SER TYR ARG VAL ASP PRO GLU FORMUL 6 HOH *941(H2 O) HELIX 1 1 SER A 97 THR A 116 1 20 HELIX 2 2 ASP A 118 TYR A 120 5 3 HELIX 3 3 THR A 121 SER A 133 1 13 HELIX 4 4 SER A 134 SER A 143 1 10 HELIX 5 5 GLN A 144 GLN A 146 5 3 HELIX 6 6 ALA A 150 GLY A 156 1 7 HELIX 7 7 ASN A 208 MET A 212 5 5 HELIX 8 8 SER A 213 LEU A 218 1 6 HELIX 9 9 SER B 97 THR B 116 1 20 HELIX 10 10 THR B 121 SER B 133 1 13 HELIX 11 11 SER B 134 SER B 143 1 10 HELIX 12 12 GLN B 144 GLN B 146 5 3 HELIX 13 13 ALA B 150 GLY B 156 1 7 HELIX 14 14 ASN B 208 MET B 212 5 5 HELIX 15 15 SER B 215 THR B 219 5 5 HELIX 16 16 SER C 97 THR C 116 1 20 HELIX 17 17 THR C 121 LEU C 132 1 12 HELIX 18 18 SER C 134 SER C 143 1 10 HELIX 19 19 GLN C 144 GLN C 146 5 3 HELIX 20 20 ALA C 150 TYR C 155 1 6 HELIX 21 21 ASN C 208 MET C 212 5 5 HELIX 22 22 SER C 215 THR C 219 5 5 HELIX 23 23 SER D 97 THR D 116 1 20 HELIX 24 24 THR D 121 SER D 133 1 13 HELIX 25 25 SER D 134 SER D 143 1 10 HELIX 26 26 GLN D 144 GLN D 146 5 3 HELIX 27 27 ALA D 150 GLY D 156 1 7 HELIX 28 28 ASN D 208 MET D 212 5 5 HELIX 29 29 SER D 213 ASN D 220 1 8 HELIX 30 30 SER E 97 THR E 116 1 20 HELIX 31 31 THR E 121 SER E 133 1 13 HELIX 32 32 SER E 134 SER E 143 1 10 HELIX 33 33 GLN E 144 GLN E 146 5 3 HELIX 34 34 ALA E 150 TYR E 155 1 6 HELIX 35 35 ASN E 208 MET E 212 5 5 HELIX 36 36 SER E 213 LEU E 218 1 6 SHEET 1 AA 4 VAL A 159 PRO A 170 0 SHEET 2 AA 4 ILE A 175 ARG A 186 -1 O THR A 177 N VAL A 169 SHEET 3 AA 4 GLU A 194 TYR A 206 -1 O GLU A 194 N THR A 184 SHEET 4 AA 4 PHE A 224 PRO A 233 -1 O ASN A 225 N GLN A 205 SHEET 1 BA 4 VAL B 159 PRO B 170 0 SHEET 2 BA 4 ILE B 175 ARG B 186 -1 O THR B 177 N VAL B 169 SHEET 3 BA 4 GLU B 194 TYR B 206 -1 O GLU B 194 N THR B 184 SHEET 4 BA 4 PHE B 224 PRO B 233 -1 O ASN B 225 N GLN B 205 SHEET 1 CA 4 VAL C 159 PRO C 170 0 SHEET 2 CA 4 ILE C 175 ARG C 186 -1 O THR C 177 N VAL C 169 SHEET 3 CA 4 GLU C 194 TYR C 206 -1 O GLU C 194 N THR C 184 SHEET 4 CA 4 PHE C 224 PRO C 233 -1 O ASN C 225 N GLN C 205 SHEET 1 DA 5 TYR D 117 ASP D 118 0 SHEET 2 DA 5 VAL D 159 PRO D 170 -1 O THR D 161 N TYR D 117 SHEET 3 DA 5 ILE D 175 ARG D 186 -1 O THR D 177 N VAL D 169 SHEET 4 DA 5 GLU D 194 TYR D 206 -1 O GLU D 194 N THR D 184 SHEET 5 DA 5 PHE D 224 PRO D 233 -1 O ASN D 225 N GLN D 205 SHEET 1 EA 4 VAL E 159 PRO E 170 0 SHEET 2 EA 4 ILE E 175 ARG E 186 -1 O THR E 177 N VAL E 169 SHEET 3 EA 4 GLU E 194 TYR E 206 -1 O GLU E 194 N THR E 184 SHEET 4 EA 4 PHE E 224 PRO E 233 -1 O ASN E 225 N GLN E 205 CRYST1 198.440 198.440 103.220 90.00 90.00 90.00 I 41 2 2 80 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009688 0.00000