HEADER CHAPERONE/RNA 05-MAR-12 4ALP TITLE THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEXAURIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN28 ISOFORM B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: COLD SHOCK DOMAIN, RESIDUES 27-114; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEXA URIDINE; COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS TROPICALIS; SOURCE 3 ORGANISM_TAXID: 8364; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS CHAPERONE-RNA COMPLEX, TRANSCRIPTION, LIN-28, RNA, LET-7, MIRNA EXPDTA X-RAY DIFFRACTION AUTHOR F.MAYR,A.SCHUETZ,N.DOEGE,U.HEINEMANN REVDAT 4 08-MAY-24 4ALP 1 REMARK REVDAT 3 04-APR-18 4ALP 1 REMARK REVDAT 2 03-OCT-12 4ALP 1 REMARK REVDAT 1 05-SEP-12 4ALP 0 JRNL AUTH F.MAYR,A.SCHUTZ,N.DOGE,U.HEINEMANN JRNL TITL THE LIN28 COLD-SHOCK DOMAIN REMODELS PRE-LET-7 MICRORNA. JRNL REF NUCLEIC ACIDS RES. V. 40 7492 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22570413 JRNL DOI 10.1093/NAR/GKS355 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 57423 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2676 REMARK 3 NUCLEIC ACID ATOMS : 115 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 656 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.123 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3006 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2196 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4069 ; 1.568 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5318 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 5.944 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;33.998 ;22.687 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;11.712 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3309 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 674 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8561 -16.9259 -21.3675 REMARK 3 T TENSOR REMARK 3 T11: 0.0386 T22: 0.0208 REMARK 3 T33: 0.0099 T12: 0.0229 REMARK 3 T13: -0.0019 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.7520 L22: 0.3736 REMARK 3 L33: 0.5899 L12: 0.0431 REMARK 3 L13: 0.3390 L23: -0.3662 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: 0.0418 S13: 0.0182 REMARK 3 S21: 0.0118 S22: -0.0004 S23: 0.0213 REMARK 3 S31: 0.0332 S32: 0.0450 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 36.2539 -12.9261 -14.1948 REMARK 3 T TENSOR REMARK 3 T11: 0.0336 T22: 0.0197 REMARK 3 T33: 0.0133 T12: 0.0017 REMARK 3 T13: -0.0073 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.3928 L22: 0.2545 REMARK 3 L33: 0.3059 L12: -0.1243 REMARK 3 L13: -0.0524 L23: 0.2724 REMARK 3 S TENSOR REMARK 3 S11: 0.0058 S12: -0.0375 S13: -0.0407 REMARK 3 S21: -0.0028 S22: -0.0226 S23: 0.0098 REMARK 3 S31: -0.0177 S32: -0.0324 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 29 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0299 -16.2834 -46.3952 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0048 REMARK 3 T33: 0.0333 T12: -0.0064 REMARK 3 T13: -0.0077 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.4427 L22: 1.1878 REMARK 3 L33: 0.3081 L12: -0.1857 REMARK 3 L13: 0.1034 L23: -0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: -0.0226 S13: -0.0159 REMARK 3 S21: -0.0897 S22: 0.0618 S23: 0.0316 REMARK 3 S31: -0.0274 S32: -0.0141 S33: -0.0548 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 30 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3687 -14.0986 -51.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0414 REMARK 3 T33: 0.0101 T12: -0.0048 REMARK 3 T13: 0.0129 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.5440 L22: 0.3454 REMARK 3 L33: 0.3762 L12: -0.2124 REMARK 3 L13: 0.0096 L23: 0.3166 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.1961 S13: 0.0201 REMARK 3 S21: 0.0085 S22: 0.0080 S23: -0.0234 REMARK 3 S31: -0.0342 S32: 0.0529 S33: -0.0392 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 6 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0887 1.0597 -34.7094 REMARK 3 T TENSOR REMARK 3 T11: 0.0817 T22: 0.0503 REMARK 3 T33: 0.0487 T12: -0.0141 REMARK 3 T13: -0.0007 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.0429 L22: 0.1564 REMARK 3 L33: 0.0953 L12: -0.0803 REMARK 3 L13: 0.0636 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0019 S13: 0.0337 REMARK 3 S21: 0.0271 S22: -0.0273 S23: -0.0651 REMARK 3 S31: -0.0097 S32: 0.0069 S33: 0.0440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ALP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 32.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.99100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.58300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.99100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.58300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 -47.99100 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 -30.58300 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 -63.21900 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.99100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 30.58300 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -63.21900 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E2010 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 GLU A 114 REMARK 465 GLY B 25 REMARK 465 SER B 26 REMARK 465 ASP B 27 REMARK 465 PRO B 28 REMARK 465 GLY C 25 REMARK 465 SER C 26 REMARK 465 ASP C 27 REMARK 465 PRO C 28 REMARK 465 GLY D 25 REMARK 465 SER D 26 REMARK 465 ASP D 27 REMARK 465 PRO D 28 REMARK 465 GLN D 29 REMARK 465 GLU D 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U E 3 C2 O2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2122 O HOH A 2128 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 64 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 64 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 U E 3 O3' - P - O5' ANGL. DEV. = -17.4 DEGREES REMARK 500 U E 3 O5' - P - OP2 ANGL. DEV. = 8.8 DEGREES REMARK 500 U E 3 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 113 84.97 -163.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2051 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A2056 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A2060 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A2112 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH E2026 DISTANCE = 6.20 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "DA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A75 RELATED DB: PDB REMARK 900 THE LIN28 COLD SHOCK DOMAIN ACTS AS AN RNA CHAPERONE REMARK 900 RELATED ID: 4A76 RELATED DB: PDB REMARK 900 THE LIN28 COLD SHOCK DOMAIN ACTS AS AN RNA CHAPERONE DBREF 4ALP A 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4ALP B 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4ALP C 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4ALP D 27 114 UNP B4F6I0 B4F6I0_XENTR 27 114 DBREF 4ALP E 1 6 PDB 4ALP 4ALP 1 6 SEQADV 4ALP GLY A 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP SER A 26 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP GLY B 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP SER B 26 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP GLY C 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP SER C 26 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP GLY D 25 UNP B4F6I0 EXPRESSION TAG SEQADV 4ALP SER D 26 UNP B4F6I0 EXPRESSION TAG SEQRES 1 A 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 A 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 A 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 A 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 A 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 A 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 A 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 B 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 B 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 B 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 B 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 B 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 B 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 B 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 C 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 C 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 C 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 C 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 C 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 C 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 C 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 D 90 GLY SER ASP PRO GLN VAL LEU ARG GLY SER GLY HIS CYS SEQRES 2 D 90 LYS TRP PHE ASN VAL ARG MET GLY PHE GLY PHE ILE SER SEQRES 3 D 90 MET THR SER ARG GLU GLY SER PRO LEU GLU ASN PRO VAL SEQRES 4 D 90 ASP VAL PHE VAL HIS GLN SER LYS LEU TYR MET GLU GLY SEQRES 5 D 90 PHE ARG SER LEU LYS GLU GLY GLU PRO VAL GLU PHE THR SEQRES 6 D 90 PHE LYS LYS SER SER LYS GLY PHE GLU SER LEU ARG VAL SEQRES 7 D 90 THR GLY PRO GLY GLY ASN PRO CYS LEU GLY ASN GLU SEQRES 1 E 6 U U U U U U HET GOL B1115 6 HET GOL D1114 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *656(H2 O) HELIX 1 1 GLY A 104 ASN A 108 5 5 HELIX 2 2 GLY B 104 ASN B 108 5 5 HELIX 3 3 GLY C 104 ASN C 108 5 5 HELIX 4 4 GLY D 104 ASN D 108 5 5 SHEET 1 AA 6 LEU A 31 ASN A 41 0 SHEET 2 AA 6 PRO A 85 SER A 93 -1 O VAL A 86 N GLY A 35 SHEET 3 AA 6 GLY A 96 THR A 103 -1 O GLY A 96 N SER A 93 SHEET 4 AA 6 SER A 57 HIS A 68 1 O PHE A 66 N SER A 99 SHEET 5 AA 6 PHE A 46 ARG A 54 -1 O GLY A 47 N VAL A 67 SHEET 6 AA 6 LEU A 31 ASN A 41 -1 O SER A 34 N SER A 53 SHEET 1 BA 6 LEU B 31 ASN B 41 0 SHEET 2 BA 6 PRO B 85 SER B 93 -1 O VAL B 86 N GLY B 35 SHEET 3 BA 6 GLY B 96 THR B 103 -1 O GLY B 96 N SER B 93 SHEET 4 BA 6 SER B 57 HIS B 68 1 O PHE B 66 N SER B 99 SHEET 5 BA 6 PHE B 46 ARG B 54 -1 O GLY B 47 N VAL B 67 SHEET 6 BA 6 LEU B 31 ASN B 41 -1 O SER B 34 N THR B 52 SHEET 1 CA 6 LEU C 31 ASN C 41 0 SHEET 2 CA 6 PRO C 85 SER C 93 -1 O VAL C 86 N GLY C 35 SHEET 3 CA 6 GLY C 96 THR C 103 -1 O GLY C 96 N SER C 93 SHEET 4 CA 6 SER C 57 HIS C 68 1 O PHE C 66 N SER C 99 SHEET 5 CA 6 PHE C 46 ARG C 54 -1 O GLY C 47 N VAL C 67 SHEET 6 CA 6 LEU C 31 ASN C 41 -1 O SER C 34 N THR C 52 SHEET 1 DA 6 LEU D 31 ASN D 41 0 SHEET 2 DA 6 PRO D 85 SER D 93 -1 O VAL D 86 N GLY D 35 SHEET 3 DA 6 GLY D 96 THR D 103 -1 O GLY D 96 N SER D 93 SHEET 4 DA 6 SER D 57 HIS D 68 1 O PHE D 66 N SER D 99 SHEET 5 DA 6 PHE D 46 ARG D 54 -1 O GLY D 47 N VAL D 67 SHEET 6 DA 6 LEU D 31 ASN D 41 -1 O SER D 34 N THR D 52 SITE 1 AC1 7 ARG B 43 HOH B2027 HIS D 68 SER D 70 SITE 2 AC1 7 LYS D 71 HOH D2070 HOH E2002 SITE 1 AC2 12 PHE B 66 LYS B 95 GLU B 98 HOH B2119 SITE 2 AC2 12 HOH B2126 TRP D 39 ASN D 41 MET D 44 SITE 3 AC2 12 HOH D2019 HOH D2020 HOH D2126 HOH D2127 CRYST1 95.982 61.166 63.219 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015818 0.00000