HEADER TRANSFERASE 07-MAR-12 4AM1 TITLE CRYSTAL STRUCTURE OF THE MARINE CRUSTACEAN DECAPOD SHRIMP (LITOPENAEUS TITLE 2 VANNAMEI) ARGININE KINASE IN THE ABSENCE OF SUBSTRATE OR LIGANDS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARGININE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.3.3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LITOPENAEUS VANNAMEI; SOURCE 3 ORGANISM_COMMON: WHITELEG SHRIMP; SOURCE 4 ORGANISM_TAXID: 6689; SOURCE 5 TISSUE: TAIL MUSCLE KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.LOPEZ-ZAVALA,R.R.SOTELO-MUNDO,K.D.GARCIA-OROZCO,F.ISAC-MARTINEZ, AUTHOR 2 L.G.BRIEBA,E.RUDINO-PINERA REVDAT 3 01-MAY-24 4AM1 1 REMARK REVDAT 2 18-JUL-12 4AM1 1 TITLE REVDAT 1 11-JUL-12 4AM1 0 JRNL AUTH A.A.LOPEZ-ZAVALA,R.R.SOTELO-MUNDO,K.D.GARCIA-OROZCO, JRNL AUTH 2 F.ISAC-MARTINEZ,L.G.BRIEBA,E.RUDINO-PINERA JRNL TITL CRYSTALLIZATION AND X-RAY DIFFRACTION STUDIES OF ARGININE JRNL TITL 2 KINASE FROM THE WHITE PACIFIC SHRIMP LITOPENAEUS VANNAMEI. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 783 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22750864 JRNL DOI 10.1107/S1744309112020180 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 91313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1021 - 3.8808 1.00 3121 159 0.1631 0.1764 REMARK 3 2 3.8808 - 3.0815 1.00 2981 163 0.1427 0.1643 REMARK 3 3 3.0815 - 2.6923 1.00 2949 152 0.1447 0.1829 REMARK 3 4 2.6923 - 2.4463 1.00 2933 155 0.1425 0.1591 REMARK 3 5 2.4463 - 2.2711 1.00 2906 155 0.1305 0.1831 REMARK 3 6 2.2711 - 2.1372 1.00 2923 152 0.1268 0.1671 REMARK 3 7 2.1372 - 2.0302 1.00 2897 148 0.1311 0.1926 REMARK 3 8 2.0302 - 1.9419 1.00 2916 150 0.1367 0.1893 REMARK 3 9 1.9419 - 1.8671 1.00 2888 157 0.1431 0.2084 REMARK 3 10 1.8671 - 1.8027 1.00 2877 170 0.1397 0.1890 REMARK 3 11 1.8027 - 1.7464 1.00 2889 141 0.1363 0.2053 REMARK 3 12 1.7464 - 1.6964 1.00 2867 169 0.1367 0.2263 REMARK 3 13 1.6964 - 1.6518 1.00 2856 176 0.1406 0.2148 REMARK 3 14 1.6518 - 1.6115 1.00 2881 126 0.1425 0.2171 REMARK 3 15 1.6115 - 1.5749 1.00 2894 154 0.1510 0.2075 REMARK 3 16 1.5749 - 1.5414 1.00 2889 141 0.1573 0.2236 REMARK 3 17 1.5414 - 1.5105 1.00 2881 135 0.1689 0.2309 REMARK 3 18 1.5105 - 1.4820 1.00 2857 160 0.1657 0.2542 REMARK 3 19 1.4820 - 1.4556 1.00 2854 167 0.1781 0.2307 REMARK 3 20 1.4556 - 1.4309 1.00 2854 163 0.1837 0.2761 REMARK 3 21 1.4309 - 1.4078 1.00 2874 134 0.1928 0.2689 REMARK 3 22 1.4078 - 1.3861 1.00 2844 144 0.2166 0.2994 REMARK 3 23 1.3861 - 1.3658 1.00 2885 169 0.2226 0.3020 REMARK 3 24 1.3658 - 1.3465 1.00 2846 139 0.2402 0.3059 REMARK 3 25 1.3465 - 1.3283 1.00 2857 164 0.2496 0.3214 REMARK 3 26 1.3283 - 1.3111 1.00 2865 132 0.2622 0.3451 REMARK 3 27 1.3111 - 1.2947 1.00 2862 153 0.2718 0.3532 REMARK 3 28 1.2947 - 1.2791 1.00 2878 161 0.2753 0.3593 REMARK 3 29 1.2791 - 1.2642 1.00 2846 141 0.2898 0.3523 REMARK 3 30 1.2642 - 1.2500 1.00 2870 143 0.2929 0.3480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.41 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 56.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10120 REMARK 3 B22 (A**2) : -0.05930 REMARK 3 B33 (A**2) : -0.04190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2928 REMARK 3 ANGLE : 1.339 3957 REMARK 3 CHIRALITY : 0.074 427 REMARK 3 PLANARITY : 0.008 519 REMARK 3 DIHEDRAL : 12.531 1124 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL CHANNEL CUT, REMARK 200 SI(111), 1M LONG RH COATED REMARK 200 TOROIDAL MIRROR FOR VERTICAL AND REMARK 200 HORIZONTAL FOCUSING. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91314 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.160 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: A THEORETICAL MOLECULAR MODEL OF THE SHRIMP AMINO REMARK 200 ACID SEQUENCE GENBANK ABI98020.1 BUILT WITH MOE CHEMCOMP AS A REMARK 200 STARTING MODEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5 AND 30% PEG 8000, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 310 REMARK 465 THR A 311 REMARK 465 ARG A 312 REMARK 465 GLY A 313 REMARK 465 GLU A 314 REMARK 465 HIS A 315 REMARK 465 THR A 316 REMARK 465 GLU A 317 REMARK 465 ALA A 318 REMARK 465 GLU A 319 REMARK 465 GLY A 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 241 O HOH A 2459 0.14 REMARK 500 OE2 GLU A 176 O HOH A 2401 0.18 REMARK 500 NH1 ARG A 124 O HOH A 2318 0.28 REMARK 500 NH1 ARG A 202 O HOH A 2344 1.20 REMARK 500 CD GLU A 176 O HOH A 2401 1.48 REMARK 500 CD GLN A 241 O HOH A 2459 1.48 REMARK 500 O HOH A 2063 O HOH A 2064 1.59 REMARK 500 CZ ARG A 124 O HOH A 2318 1.63 REMARK 500 O HOH A 2294 O HOH A 2523 1.81 REMARK 500 O HOH A 2308 O HOH A 2309 1.86 REMARK 500 O HOH A 2203 O HOH A 2432 1.97 REMARK 500 O HOH A 2115 O HOH A 2116 1.99 REMARK 500 OD2 ASP A 183 O HOH A 2410 2.02 REMARK 500 N GLY A 1 O HOH A 2002 2.02 REMARK 500 NZ LYS A 289 O MET A 356 2.02 REMARK 500 O ALA A 291 N ASN A 293 2.03 REMARK 500 NH1 ARG A 294 OE2 GLU A 298 2.05 REMARK 500 O HOH A 2114 O HOH A 2116 2.05 REMARK 500 O HOH A 2236 O HOH A 2237 2.07 REMARK 500 O HOH A 2053 O HOH A 2055 2.08 REMARK 500 N GLY A 321 O HOH A 2524 2.08 REMARK 500 O HOH A 2381 O HOH A 2382 2.08 REMARK 500 O HOH A 2141 O HOH A 2142 2.09 REMARK 500 NZ LYS A 94 O HOH A 2245 2.10 REMARK 500 O HOH A 2182 O HOH A 2183 2.11 REMARK 500 O HOH A 2075 O HOH A 2078 2.12 REMARK 500 O GLY A 321 O HOH A 2499 2.13 REMARK 500 O HOH A 2487 O HOH A 2488 2.16 REMARK 500 OD1 ASN A 108 NH2 ARG A 244 2.16 REMARK 500 O HOH A 2052 O HOH A 2054 2.17 REMARK 500 O HOH A 2400 O HOH A 2402 2.17 REMARK 500 O HOH A 2100 O HOH A 2101 2.18 REMARK 500 N GLU A 18 O HOH A 2041 2.19 REMARK 500 O HOH A 2316 O HOH A 2533 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2003 O HOH A 2489 4555 1.51 REMARK 500 O HOH A 2208 O HOH A 2520 2555 1.87 REMARK 500 O HOH A 2090 O HOH A 2483 4555 2.01 REMARK 500 O HOH A 2214 O HOH A 2483 4555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 201 CG MET A 201 SD -0.288 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 201 CG - SD - CE ANGL. DEV. = 52.9 DEGREES REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 MET A 356 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 MET A 356 CB - CG - SD ANGL. DEV. = -24.4 DEGREES REMARK 500 MET A 356 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -73.04 -107.17 REMARK 500 ASP A 114 75.07 -155.97 REMARK 500 GLU A 225 -48.85 -137.21 REMARK 500 GLU A 225 -49.53 -136.40 REMARK 500 ALA A 291 -122.60 -66.51 REMARK 500 ALA A 292 -56.37 52.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2064 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2082 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH A2089 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2113 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2168 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A2173 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A2204 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2547 DISTANCE = 6.60 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 DISCREPANCIES IN SEQUENCE BETWEEN THE UNIPROT ENTRY REMARK 999 Q004B5 AND THE SEQUENCE DETERMINED FROM ELECTRON REMARK 999 DENSITY ARE CLEARLY SUPPORTED BY THE ELECTRON DENSITY. REMARK 999 RESIDUES K43, M131, M139, M201, I286 AND A295 ARE REMARK 999 INDEED SEQUENCED BY THE ELECTRON DENSITY AT 1.25 A OF THIS REMARK 999 DEPOSIT. DBREF 4AM1 A 2 356 UNP Q004B5 Q004B5_LITVA 2 356 SEQADV 4AM1 GLY A 1 UNP Q004B5 EXPRESSION TAG SEQADV 4AM1 LYS A 43 UNP Q004B5 ARG 43 SEE REMARK 999 SEQADV 4AM1 MET A 131 UNP Q004B5 LEU 131 SEE REMARK 999 SEQADV 4AM1 MET A 139 UNP Q004B5 CYS 139 SEE REMARK 999 SEQADV 4AM1 MET A 201 UNP Q004B5 CYS 201 SEE REMARK 999 SEQADV 4AM1 ILE A 286 UNP Q004B5 LYS 286 SEE REMARK 999 SEQADV 4AM1 ALA A 295 UNP Q004B5 GLU 295 SEE REMARK 999 SEQADV 4AM1 ALA A 309 UNP Q004B5 ARG 309 CONFLICT SEQRES 1 A 356 GLY ALA ASP ALA ALA VAL ILE GLU LYS LEU GLU ALA GLY SEQRES 2 A 356 PHE LYS LYS LEU GLU ALA ALA THR ASP CYS LYS SER LEU SEQRES 3 A 356 LEU LYS LYS TYR LEU THR LYS GLU VAL PHE ASP LYS LEU SEQRES 4 A 356 LYS ASP LYS LYS THR SER LEU GLY ALA THR LEU LEU ASP SEQRES 5 A 356 VAL ILE GLN SER GLY VAL GLU ASN LEU ASP SER GLY VAL SEQRES 6 A 356 GLY ILE TYR ALA PRO ASP ALA GLU ALA TYR THR LEU PHE SEQRES 7 A 356 ALA PRO LEU PHE ASP PRO ILE ILE GLU ASP TYR HIS VAL SEQRES 8 A 356 GLY PHE LYS GLN THR ASP LYS HIS PRO ASN LYS ASP PHE SEQRES 9 A 356 GLY ASP VAL ASN SER PHE VAL ASN VAL ASP PRO GLU GLY SEQRES 10 A 356 LYS PHE VAL ILE SER THR ARG VAL ARG CYS GLY ARG SER SEQRES 11 A 356 MET GLN GLY TYR PRO PHE ASN PRO MET LEU THR GLU SER SEQRES 12 A 356 GLN TYR LYS GLU MET GLU ALA LYS VAL SER SER THR LEU SEQRES 13 A 356 SER SER LEU GLU GLY GLU LEU LYS GLY THR TYR TYR PRO SEQRES 14 A 356 LEU THR GLY MET SER LYS GLU VAL GLN GLN LYS LEU ILE SEQRES 15 A 356 ASP ASP HIS PHE LEU PHE LYS GLU GLY ASP ARG PHE LEU SEQRES 16 A 356 GLN ALA ALA ASN ALA MET ARG TYR TRP PRO ALA GLY ARG SEQRES 17 A 356 GLY ILE TYR HIS ASN ASP ASN LYS THR PHE LEU VAL TRP SEQRES 18 A 356 VAL ASN GLU GLU ASP HIS LEU ARG ILE ILE SER MET GLN SEQRES 19 A 356 MET GLY GLY ASP LEU GLY GLN VAL PHE ARG ARG LEU THR SEQRES 20 A 356 SER ALA VAL ASN GLU ILE GLU LYS ARG ILE PRO PHE SER SEQRES 21 A 356 HIS HIS ASP ARG LEU GLY PHE LEU THR PHE CYS PRO THR SEQRES 22 A 356 ASN LEU GLY THR THR VAL ARG ALA SER VAL HIS ILE ILE SEQRES 23 A 356 LEU PRO LYS LEU ALA ALA ASN ARG ALA LYS LEU GLU GLU SEQRES 24 A 356 VAL ALA GLY LYS TYR ASN LEU GLN VAL ALA GLY THR ARG SEQRES 25 A 356 GLY GLU HIS THR GLU ALA GLU GLY GLY ILE TYR ASP ILE SEQRES 26 A 356 SER ASN LYS ARG ARG MET GLY LEU THR GLU PHE GLN ALA SEQRES 27 A 356 VAL LYS GLU MET GLN ASP GLY ILE LEU GLU LEU ILE LYS SEQRES 28 A 356 ILE GLU LYS GLU MET FORMUL 2 HOH *547(H2 O) HELIX 1 1 ASP A 3 ALA A 20 1 18 HELIX 2 2 SER A 25 LEU A 31 1 7 HELIX 3 3 THR A 32 LYS A 40 1 9 HELIX 4 4 LEU A 50 ASN A 60 1 11 HELIX 5 5 ALA A 72 PHE A 78 1 7 HELIX 6 6 PHE A 78 HIS A 90 1 13 HELIX 7 7 PHE A 136 LEU A 140 5 5 HELIX 8 8 THR A 141 SER A 158 1 18 HELIX 9 9 GLU A 160 LEU A 163 5 4 HELIX 10 10 SER A 174 ASP A 184 1 11 HELIX 11 11 ASP A 192 ALA A 198 1 7 HELIX 12 12 ASP A 238 ILE A 257 1 20 HELIX 13 13 CYS A 271 LEU A 275 5 5 HELIX 14 14 ASN A 293 TYR A 304 1 12 HELIX 15 15 THR A 334 GLU A 355 1 22 SHEET 1 AA 8 GLY A 165 PRO A 169 0 SHEET 2 AA 8 GLY A 209 ASN A 213 -1 O ILE A 210 N TYR A 168 SHEET 3 AA 8 PHE A 218 VAL A 222 -1 O PHE A 218 N ASN A 213 SHEET 4 AA 8 LEU A 228 MET A 235 -1 O ARG A 229 N TRP A 221 SHEET 5 AA 8 VAL A 120 ARG A 129 -1 O THR A 123 N GLN A 234 SHEET 6 AA 8 ARG A 280 ILE A 286 -1 O ARG A 280 N ARG A 126 SHEET 7 AA 8 ILE A 322 ASN A 327 -1 O TYR A 323 N ILE A 285 SHEET 8 AA 8 LEU A 306 ALA A 309 -1 O GLN A 307 N SER A 326 SHEET 1 AB 2 HIS A 261 HIS A 262 0 SHEET 2 AB 2 GLY A 266 PHE A 267 -1 O GLY A 266 N HIS A 262 CISPEP 1 TRP A 204 PRO A 205 0 5.20 CRYST1 56.720 70.390 81.990 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017630 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012197 0.00000