HEADER TRANSFERASE 09-MAR-12 4AMG TITLE CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SNOGD FROM STREPTOMYCES TITLE 2 NOGALATER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOGD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE PROTEIN WAS SUBJECTED TO METHYLATION. MOST LYSINE COMPND 6 RESIDUES AND THE N-TERMINAL AMINO GROUP SHOULD BE DIMETHYLATED. ONLY COMPND 7 FOR K384 DIMETHYLATION WAS VISIBLE IN THE ELECTRON DENSITY MAP AND COMPND 8 THUS MODELED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES NOGALATER; SOURCE 3 ORGANISM_TAXID: 38314; SOURCE 4 ATCC: 27451; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSAI KEYWDS TRANSFERASE, POLYKETIDE BIOSYNTHESIS, GT1 FAMILY, NOGALAMYCIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CLAESSON,V.SIITONEN,D.DOBRITZSCH,M.METSA-KETELA,G.SCHNEIDER REVDAT 2 20-DEC-23 4AMG 1 LINK REVDAT 1 05-SEP-12 4AMG 0 JRNL AUTH M.CLAESSON,V.SIITONEN,D.DOBRITZSCH,M.METSA-KETELA, JRNL AUTH 2 G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SNOGD FROM THE JRNL TITL 2 BIOSYNTHETIC PATHWAY OF THE NOGALAMYCIN IN STREPTOMYCES JRNL TITL 3 NOGALATER. JRNL REF FEBS J. V. 279 3251 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22804797 JRNL DOI 10.1111/J.1742-4658.2012.08711.X REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 24729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1300 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.5000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.75000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.795 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5482 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3691 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7485 ; 1.321 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8996 ; 1.495 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 5.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;37.931 ;22.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;18.761 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;22.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 873 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6180 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1067 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 11 389 B 11 389 11594 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4AMB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16 % (W/V) PEG 3350, 0.2 M MGCL2, 0.1 REMARK 280 M BISTRIS PH 5.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.33800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.89900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.33800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 89.89900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 PHE A 10 REMARK 465 THR A 79 REMARK 465 ASP A 80 REMARK 465 VAL A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 PRO A 84 REMARK 465 MET A 85 REMARK 465 HIS A 86 REMARK 465 SER A 87 REMARK 465 GLU A 88 REMARK 465 GLY A 89 REMARK 465 LEU A 90 REMARK 465 ALA A 239 REMARK 465 LEU A 240 REMARK 465 GLY A 323 REMARK 465 SER A 324 REMARK 465 TYR A 325 REMARK 465 GLY A 390 REMARK 465 MET B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 VAL B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 TYR B 9 REMARK 465 PHE B 10 REMARK 465 ASP B 78 REMARK 465 THR B 79 REMARK 465 ASP B 80 REMARK 465 VAL B 81 REMARK 465 THR B 82 REMARK 465 SER B 324 REMARK 465 TYR B 325 REMARK 465 GLN B 326 REMARK 465 ASP B 327 REMARK 465 GLY B 390 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 72 OD2 ASP B 77 2.07 REMARK 500 O PRO A 249 OG SER A 252 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 36.79 -89.82 REMARK 500 SER A 65 57.24 -146.69 REMARK 500 ARG A 118 70.33 56.12 REMARK 500 PRO A 126 -38.60 -37.73 REMARK 500 SER A 152 89.28 -69.29 REMARK 500 ALA A 225 107.63 -52.56 REMARK 500 THR A 328 -70.54 -43.22 REMARK 500 ASP B 50 36.88 -89.22 REMARK 500 SER B 65 55.39 -147.60 REMARK 500 ARG B 118 71.18 55.62 REMARK 500 PRO B 126 -37.04 -39.05 REMARK 500 SER B 152 90.14 -64.58 REMARK 500 GLU B 153 88.66 -151.38 REMARK 500 SER B 304 106.06 -51.18 REMARK 500 ASN B 329 -8.00 80.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AMB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SNOGD FROM REMARK 900 STREPTOMYCES NOGALATER REMARK 900 RELATED ID: 4AN4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SNOGD FROM REMARK 900 STREPTOMYCES NOGALATER DBREF 4AMG A 13 390 UNP Q9RN61 Q9RN61_STRNO 13 390 DBREF 4AMG B 13 390 UNP Q9RN61 Q9RN61_STRNO 13 390 SEQADV 4AMG MET A -9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS A -8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS A -7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS A -6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS A -5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS A -4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS A -3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG SER A -2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG SER A -1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLY A 0 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG VAL A 1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG ASP A 2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG LEU A 3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLY A 4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG THR A 5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLU A 6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG ASN A 7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG LEU A 8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG TYR A 9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG PHE A 10 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLN A 11 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG SER A 12 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG MET B -9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS B -8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS B -7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS B -6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS B -5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS B -4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG HIS B -3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG SER B -2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG SER B -1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLY B 0 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG VAL B 1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG ASP B 2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG LEU B 3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLY B 4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG THR B 5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLU B 6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG ASN B 7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG LEU B 8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG TYR B 9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG PHE B 10 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG GLN B 11 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMG SER B 12 UNP Q9RN61 EXPRESSION TAG SEQRES 1 A 400 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 400 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ALA LEU SEQRES 3 A 400 PHE ILE THR SER PRO GLY LEU SER HIS ILE LEU PRO THR SEQRES 4 A 400 VAL PRO LEU ALA GLN ALA LEU ARG ALA LEU GLY HIS GLU SEQRES 5 A 400 VAL ARG TYR ALA THR GLY GLY ASP ILE ARG ALA VAL ALA SEQRES 6 A 400 GLU ALA GLY LEU CYS ALA VAL ASP VAL SER PRO GLY VAL SEQRES 7 A 400 ASN TYR ALA LYS LEU PHE VAL PRO ASP ASP THR ASP VAL SEQRES 8 A 400 THR ASP PRO MET HIS SER GLU GLY LEU GLY GLU GLY PHE SEQRES 9 A 400 PHE ALA GLU MET PHE ALA ARG VAL SER ALA VAL ALA VAL SEQRES 10 A 400 ASP GLY ALA LEU ARG THR ALA ARG SER TRP ARG PRO ASP SEQRES 11 A 400 LEU VAL VAL HIS THR PRO THR GLN GLY ALA GLY PRO LEU SEQRES 12 A 400 THR ALA ALA ALA LEU GLN LEU PRO CYS VAL GLU LEU PRO SEQRES 13 A 400 LEU GLY PRO ALA ASP SER GLU PRO GLY LEU GLY ALA LEU SEQRES 14 A 400 ILE ARG ARG ALA MET SER LYS ASP TYR GLU ARG HIS GLY SEQRES 15 A 400 VAL THR GLY GLU PRO THR GLY SER VAL ARG LEU THR THR SEQRES 16 A 400 THR PRO PRO SER VAL GLU ALA LEU LEU PRO GLU ASP ARG SEQRES 17 A 400 ARG SER PRO GLY ALA TRP PRO MET ARG TYR VAL PRO TYR SEQRES 18 A 400 ASN GLY GLY ALA VAL LEU PRO ASP TRP LEU PRO PRO ALA SEQRES 19 A 400 ALA GLY ARG ARG ARG ILE ALA VAL THR LEU GLY SER ILE SEQRES 20 A 400 ASP ALA LEU SER GLY GLY ILE ALA LYS LEU ALA PRO LEU SEQRES 21 A 400 PHE SER GLU VAL ALA ASP VAL ASP ALA GLU PHE VAL LEU SEQRES 22 A 400 THR LEU GLY GLY GLY ASP LEU ALA LEU LEU GLY GLU LEU SEQRES 23 A 400 PRO ALA ASN VAL ARG VAL VAL GLU TRP ILE PRO LEU GLY SEQRES 24 A 400 ALA LEU LEU GLU THR CYS ASP ALA ILE ILE HIS HIS GLY SEQRES 25 A 400 GLY SER GLY THR LEU LEU THR ALA LEU ALA ALA GLY VAL SEQRES 26 A 400 PRO GLN CYS VAL ILE PRO HIS GLY SER TYR GLN ASP THR SEQRES 27 A 400 ASN ARG ASP VAL LEU THR GLY LEU GLY ILE GLY PHE ASP SEQRES 28 A 400 ALA GLU ALA GLY SER LEU GLY ALA GLU GLN CYS ARG ARG SEQRES 29 A 400 LEU LEU ASP ASP ALA GLY LEU ARG GLU ALA ALA LEU ARG SEQRES 30 A 400 VAL ARG GLN GLU MET SER GLU MET PRO PRO PRO ALA GLU SEQRES 31 A 400 THR ALA ALA MLY LEU VAL ALA LEU ALA GLY SEQRES 1 B 400 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 400 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ALA LEU SEQRES 3 B 400 PHE ILE THR SER PRO GLY LEU SER HIS ILE LEU PRO THR SEQRES 4 B 400 VAL PRO LEU ALA GLN ALA LEU ARG ALA LEU GLY HIS GLU SEQRES 5 B 400 VAL ARG TYR ALA THR GLY GLY ASP ILE ARG ALA VAL ALA SEQRES 6 B 400 GLU ALA GLY LEU CYS ALA VAL ASP VAL SER PRO GLY VAL SEQRES 7 B 400 ASN TYR ALA LYS LEU PHE VAL PRO ASP ASP THR ASP VAL SEQRES 8 B 400 THR ASP PRO MET HIS SER GLU GLY LEU GLY GLU GLY PHE SEQRES 9 B 400 PHE ALA GLU MET PHE ALA ARG VAL SER ALA VAL ALA VAL SEQRES 10 B 400 ASP GLY ALA LEU ARG THR ALA ARG SER TRP ARG PRO ASP SEQRES 11 B 400 LEU VAL VAL HIS THR PRO THR GLN GLY ALA GLY PRO LEU SEQRES 12 B 400 THR ALA ALA ALA LEU GLN LEU PRO CYS VAL GLU LEU PRO SEQRES 13 B 400 LEU GLY PRO ALA ASP SER GLU PRO GLY LEU GLY ALA LEU SEQRES 14 B 400 ILE ARG ARG ALA MET SER LYS ASP TYR GLU ARG HIS GLY SEQRES 15 B 400 VAL THR GLY GLU PRO THR GLY SER VAL ARG LEU THR THR SEQRES 16 B 400 THR PRO PRO SER VAL GLU ALA LEU LEU PRO GLU ASP ARG SEQRES 17 B 400 ARG SER PRO GLY ALA TRP PRO MET ARG TYR VAL PRO TYR SEQRES 18 B 400 ASN GLY GLY ALA VAL LEU PRO ASP TRP LEU PRO PRO ALA SEQRES 19 B 400 ALA GLY ARG ARG ARG ILE ALA VAL THR LEU GLY SER ILE SEQRES 20 B 400 ASP ALA LEU SER GLY GLY ILE ALA LYS LEU ALA PRO LEU SEQRES 21 B 400 PHE SER GLU VAL ALA ASP VAL ASP ALA GLU PHE VAL LEU SEQRES 22 B 400 THR LEU GLY GLY GLY ASP LEU ALA LEU LEU GLY GLU LEU SEQRES 23 B 400 PRO ALA ASN VAL ARG VAL VAL GLU TRP ILE PRO LEU GLY SEQRES 24 B 400 ALA LEU LEU GLU THR CYS ASP ALA ILE ILE HIS HIS GLY SEQRES 25 B 400 GLY SER GLY THR LEU LEU THR ALA LEU ALA ALA GLY VAL SEQRES 26 B 400 PRO GLN CYS VAL ILE PRO HIS GLY SER TYR GLN ASP THR SEQRES 27 B 400 ASN ARG ASP VAL LEU THR GLY LEU GLY ILE GLY PHE ASP SEQRES 28 B 400 ALA GLU ALA GLY SER LEU GLY ALA GLU GLN CYS ARG ARG SEQRES 29 B 400 LEU LEU ASP ASP ALA GLY LEU ARG GLU ALA ALA LEU ARG SEQRES 30 B 400 VAL ARG GLN GLU MET SER GLU MET PRO PRO PRO ALA GLU SEQRES 31 B 400 THR ALA ALA MLY LEU VAL ALA LEU ALA GLY MODRES 4AMG MLY A 384 LYS N-DIMETHYL-LYSINE MODRES 4AMG MLY B 384 LYS N-DIMETHYL-LYSINE HET MLY A 384 11 HET MLY B 384 11 HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 MLY 2(C8 H18 N2 O2) FORMUL 3 HOH *67(H2 O) HELIX 1 1 GLY A 22 LEU A 27 1 6 HELIX 2 2 THR A 29 LEU A 39 1 11 HELIX 3 3 ILE A 51 GLU A 56 1 6 HELIX 4 4 TYR A 70 VAL A 75 1 6 HELIX 5 5 GLY A 91 VAL A 105 1 15 HELIX 6 6 ALA A 106 ARG A 118 1 13 HELIX 7 7 GLY A 129 LEU A 138 1 10 HELIX 8 8 GLU A 153 MET A 164 1 12 HELIX 9 9 MET A 164 HIS A 171 1 8 HELIX 10 10 PRO A 187 LEU A 193 1 7 HELIX 11 11 PRO A 195 ARG A 199 5 5 HELIX 12 12 LEU A 247 VAL A 254 1 8 HELIX 13 13 ALA A 255 VAL A 257 5 3 HELIX 14 14 PRO A 287 GLU A 293 1 7 HELIX 15 15 GLY A 303 GLY A 314 1 12 HELIX 16 16 GLN A 326 LEU A 336 1 11 HELIX 17 17 GLY A 348 ASP A 358 1 11 HELIX 18 18 ASP A 358 GLU A 374 1 17 HELIX 19 19 PRO A 377 ALA A 389 1 13 HELIX 20 20 GLY B 22 LEU B 27 1 6 HELIX 21 21 THR B 29 LEU B 39 1 11 HELIX 22 22 ILE B 51 GLU B 56 1 6 HELIX 23 23 TYR B 70 VAL B 75 1 6 HELIX 24 24 GLY B 91 VAL B 105 1 15 HELIX 25 25 ALA B 106 ARG B 118 1 13 HELIX 26 26 GLY B 129 LEU B 138 1 10 HELIX 27 27 GLY B 155 MET B 164 1 10 HELIX 28 28 MET B 164 HIS B 171 1 8 HELIX 29 29 PRO B 187 LEU B 193 1 7 HELIX 30 30 GLY B 242 LYS B 246 5 5 HELIX 31 31 LEU B 247 SER B 252 1 6 HELIX 32 32 GLU B 253 VAL B 257 5 5 HELIX 33 33 PRO B 287 GLU B 293 1 7 HELIX 34 34 GLY B 305 GLY B 314 1 10 HELIX 35 35 ARG B 330 LEU B 336 1 7 HELIX 36 36 GLY B 348 ASP B 358 1 11 HELIX 37 37 ASP B 358 GLU B 374 1 17 HELIX 38 38 PRO B 377 ALA B 389 1 13 SHEET 1 AA 8 TRP A 204 PRO A 205 0 SHEET 2 AA 8 SER A 180 THR A 184 1 O ARG A 182 N TRP A 204 SHEET 3 AA 8 CYS A 142 GLU A 144 1 O CYS A 142 N VAL A 181 SHEET 4 AA 8 LEU A 121 HIS A 124 1 O VAL A 122 N VAL A 143 SHEET 5 AA 8 ARG A 14 ILE A 18 1 O LEU A 16 N VAL A 123 SHEET 6 AA 8 GLU A 42 THR A 47 1 O GLU A 42 N ALA A 15 SHEET 7 AA 8 CYS A 60 ASP A 63 1 O CYS A 60 N TYR A 45 SHEET 8 AA 8 ALA B 215 VAL B 216 1 O ALA B 215 N ALA A 61 SHEET 1 AB 8 ALA A 215 VAL A 216 0 SHEET 2 AB 8 CYS B 60 ASP B 63 1 N ALA B 61 O ALA A 215 SHEET 3 AB 8 GLU B 42 THR B 47 1 O TYR B 45 N VAL B 62 SHEET 4 AB 8 ARG B 14 ILE B 18 1 O ALA B 15 N ARG B 44 SHEET 5 AB 8 LEU B 121 HIS B 124 1 O LEU B 121 N LEU B 16 SHEET 6 AB 8 CYS B 142 GLU B 144 1 O VAL B 143 N HIS B 124 SHEET 7 AB 8 SER B 180 THR B 184 1 O VAL B 181 N GLU B 144 SHEET 8 AB 8 TRP B 204 PRO B 205 1 O TRP B 204 N THR B 184 SHEET 1 AC 6 VAL A 280 VAL A 283 0 SHEET 2 AC 6 GLU A 260 THR A 264 1 O PHE A 261 N ARG A 281 SHEET 3 AC 6 ARG A 229 VAL A 232 1 O ILE A 230 N VAL A 262 SHEET 4 AC 6 ALA A 297 HIS A 300 1 O ALA A 297 N ALA A 231 SHEET 5 AC 6 GLN A 317 VAL A 319 1 O CYS A 318 N HIS A 300 SHEET 6 AC 6 GLY A 339 ASP A 341 1 O PHE A 340 N VAL A 319 SHEET 1 BA 6 VAL B 280 VAL B 283 0 SHEET 2 BA 6 GLU B 260 THR B 264 1 O PHE B 261 N ARG B 281 SHEET 3 BA 6 ARG B 229 THR B 233 1 O ILE B 230 N VAL B 262 SHEET 4 BA 6 ALA B 297 HIS B 300 1 O ALA B 297 N ALA B 231 SHEET 5 BA 6 GLN B 317 VAL B 319 1 O CYS B 318 N HIS B 300 SHEET 6 BA 6 GLY B 339 ASP B 341 1 O PHE B 340 N VAL B 319 LINK C ALA A 383 N MLY A 384 1555 1555 1.33 LINK C MLY A 384 N LEU A 385 1555 1555 1.33 LINK C ALA B 383 N MLY B 384 1555 1555 1.33 LINK C MLY B 384 N LEU B 385 1555 1555 1.33 CISPEP 1 ASP B 83 PRO B 84 0 -5.24 CISPEP 2 ALA B 239 LEU B 240 0 -9.48 CRYST1 66.676 179.798 70.246 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014998 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014236 0.00000