HEADER MEMBRANE PROTEIN/MOTOR PROTEIN 29-MAR-12 4AOM TITLE MTIP AND MYOA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN A TAIL DOMAIN INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYOSIN-A INTERACTING DOMAIN, RESIDUES 60-204; COMPND 5 SYNONYM: MTIP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MYOSIN-A; COMPND 9 CHAIN: T; COMPND 10 FRAGMENT: TAIL, RESIDUES 799-816; COMPND 11 SYNONYM: PFM-A, MYOA; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: N-TERMINAL ACETYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 9 ORGANISM_TAXID: 5833 KEYWDS MEMBRANE PROTEIN-MOTOR PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.S.SALGADO,C.H.DOUSE,P.J.SIMPSON,J.C.THOMAS,A.A.HOLDER,E.W.TATE, AUTHOR 2 E.COTA REVDAT 5 20-DEC-23 4AOM 1 REMARK REVDAT 4 05-JUL-17 4AOM 1 REMARK REVDAT 3 13-NOV-13 4AOM 1 AUTHOR JRNL REVDAT 2 07-NOV-12 4AOM 1 JRNL REVDAT 1 05-SEP-12 4AOM 0 JRNL AUTH C.H.DOUSE,J.L.GREEN,P.S.SALGADO,P.J.SIMPSON,J.C.THOMAS, JRNL AUTH 2 A.A.HOLDER,E.W.TATE,E.COTA JRNL TITL REGULATION OF THE PLASMODIUM MOTOR COMPLEX: PHOSPHORYLATION JRNL TITL 2 OF MYOSIN A TAIL INTERACTING PROTEIN (MTIP) LOOSENS ITS GRIP JRNL TITL 3 ON MYOA JRNL REF J.BIOL.CHEM. V. 287 36968 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22932904 JRNL DOI 10.1074/JBC.M112.379842 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 13.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 11676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 13.2187 - 3.0677 1.00 2937 141 0.1778 0.2116 REMARK 3 2 3.0677 - 2.4399 0.99 2784 133 0.1792 0.2073 REMARK 3 3 2.4399 - 2.1329 0.98 2746 140 0.1674 0.2362 REMARK 3 4 2.1329 - 1.9386 0.96 2647 148 0.1811 0.2614 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 41.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22990 REMARK 3 B22 (A**2) : -0.01410 REMARK 3 B33 (A**2) : -0.21590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1314 REMARK 3 ANGLE : 0.968 1769 REMARK 3 CHIRALITY : 0.064 198 REMARK 3 PLANARITY : 0.004 229 REMARK 3 DIHEDRAL : 13.217 497 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.7346 -3.5085 10.5338 REMARK 3 T TENSOR REMARK 3 T11: 0.0248 T22: 0.0328 REMARK 3 T33: 0.0323 T12: 0.0049 REMARK 3 T13: -0.0033 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.1864 L22: 0.2313 REMARK 3 L33: 0.3808 L12: -0.1413 REMARK 3 L13: 0.1225 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0084 S13: 0.0356 REMARK 3 S21: -0.0406 S22: -0.0054 S23: -0.0178 REMARK 3 S31: 0.0078 S32: 0.0559 S33: 0.0028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 13.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.400 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.21000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QAC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM THIOCYANATE, 20% REMARK 280 PEG3350, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.63200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.51200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.35200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.51200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.63200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.35200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLU A 60 REMARK 465 SER A 61 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2186 O HOH A 2187 1.92 REMARK 500 O HOH A 2001 O HOH A 2118 1.93 REMARK 500 N LYS T 799 O HOH T 2009 1.99 REMARK 500 O VAL T 816 O HOH T 2022 2.01 REMARK 500 O HOH A 2012 O HOH A 2013 2.05 REMARK 500 O HOH A 2085 O HOH A 2086 2.12 REMARK 500 O HOH A 2110 O HOH A 2167 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2053 O HOH A 2131 2454 1.85 REMARK 500 OE2 GLU A 116 OG SER A 162 3455 2.15 REMARK 500 O HOH A 2124 O HOH A 2145 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 63 127.00 -32.38 REMARK 500 THR A 170 -73.56 -102.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH T2008 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH T2023 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH T2024 DISTANCE = 6.32 ANGSTROMS DBREF 4AOM A 60 204 UNP Q8I4W8 Q8I4W8_PLAF7 60 204 DBREF 4AOM T 799 816 UNP Q9UAR6 MYOA_PLAFB 799 816 SEQADV 4AOM MET A 59 UNP Q8I4W8 EXPRESSION TAG SEQRES 1 A 146 MET GLU SER VAL ALA ASP ILE GLN GLN LEU GLU GLU LYS SEQRES 2 A 146 VAL ASP GLU SER ASP VAL ARG ILE TYR PHE ASN GLU LYS SEQRES 3 A 146 SER SER GLY GLY LYS ILE SER ILE ASP ASN ALA SER TYR SEQRES 4 A 146 ASN ALA ARG LYS LEU GLY LEU ALA PRO SER SER ILE ASP SEQRES 5 A 146 GLU LYS LYS ILE LYS GLU LEU TYR GLY ASP ASN LEU THR SEQRES 6 A 146 TYR GLU GLN TYR LEU GLU TYR LEU SER ILE CYS VAL HIS SEQRES 7 A 146 ASP LYS ASP ASN VAL GLU GLU LEU ILE LYS MET PHE ALA SEQRES 8 A 146 HIS PHE ASP ASN ASN CYS THR GLY TYR LEU THR LYS SER SEQRES 9 A 146 GLN MET LYS ASN ILE LEU THR THR TRP GLY ASP ALA LEU SEQRES 10 A 146 THR ASP GLN GLU ALA ILE ASP ALA LEU ASN ALA PHE SER SEQRES 11 A 146 SER GLU ASP ASN ILE ASP TYR LYS LEU PHE CYS GLU ASP SEQRES 12 A 146 ILE LEU GLN SEQRES 1 T 18 LYS ASN ILE PRO SER LEU LEU ARG VAL GLN ALA HIS ILE SEQRES 2 T 18 ARG LYS LYS MET VAL FORMUL 3 HOH *215(H2 O) HELIX 1 1 ASP A 64 VAL A 72 1 9 HELIX 2 2 ASP A 73 SER A 85 1 13 HELIX 3 3 ILE A 92 LEU A 102 1 11 HELIX 4 4 SER A 107 GLY A 119 1 13 HELIX 5 5 THR A 123 CYS A 134 1 12 HELIX 6 6 ASN A 140 HIS A 150 1 11 HELIX 7 7 LYS A 161 THR A 170 1 10 HELIX 8 8 THR A 176 SER A 188 1 13 HELIX 9 9 TYR A 195 GLN A 204 1 10 HELIX 10 10 ASN T 800 MET T 815 1 16 SHEET 1 AA 2 ILE A 90 SER A 91 0 SHEET 2 AA 2 ASN A 121 LEU A 122 -1 O LEU A 122 N ILE A 90 SHEET 1 AB 2 TYR A 158 THR A 160 0 SHEET 2 AB 2 ASN A 192 ASP A 194 -1 O ILE A 193 N LEU A 159 CRYST1 37.264 54.704 75.024 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013329 0.00000