HEADER OXIDOREDUCTASE 30-MAR-12 4AP3 TITLE OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROID MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.54; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS RHODOCHROUS; SOURCE 3 ORGANISM_TAXID: 1829; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-SUMO KEYWDS OXIDOREDUCTASE, BAEYER-VILLIGER EXPDTA X-RAY DIFFRACTION AUTHOR S.FRANCESCHINI,H.L.VAN BEEK,C.MARTINOLI,A.PENNETTA,M.W.FRAAIJE, AUTHOR 2 A.MATTEVI REVDAT 3 20-DEC-23 4AP3 1 REMARK REVDAT 2 11-JUL-12 4AP3 1 JRNL REVDAT 1 30-MAY-12 4AP3 0 JRNL AUTH S.FRANCESCHINI,H.L.VAN BEEK,A.PENNETTA,C.MARTINOLI, JRNL AUTH 2 M.W.FRAAIJE,A.MATTEVI JRNL TITL EXPLORING THE STRUCTURAL BASIS OF SUBSTRATE PREFERENCES IN JRNL TITL 2 BAEYER-VILLIGER MONOOXYGENASES: INSIGHT FROM STEROID JRNL TITL 3 MONOOXYGENASE. JRNL REF J.BIOL.CHEM. V. 287 22626 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22605340 JRNL DOI 10.1074/JBC.M112.372177 REMARK 2 REMARK 2 RESOLUTION. 2.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 81 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.736 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4169 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5696 ; 1.213 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 5.436 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;31.216 ;22.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;16.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;17.654 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 616 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3252 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 159 REMARK 3 RESIDUE RANGE : A 393 A 549 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1480 14.1850 -17.8820 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.2869 REMARK 3 T33: 0.0681 T12: -0.0533 REMARK 3 T13: -0.0289 T23: 0.1017 REMARK 3 L TENSOR REMARK 3 L11: 3.4852 L22: 1.3157 REMARK 3 L33: 2.5148 L12: -0.4189 REMARK 3 L13: -0.7012 L23: -0.1302 REMARK 3 S TENSOR REMARK 3 S11: -0.1176 S12: -0.0279 S13: -0.2478 REMARK 3 S21: 0.0716 S22: 0.1198 S23: 0.0968 REMARK 3 S31: 0.1885 S32: -0.1460 S33: -0.0023 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 160 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8740 -3.8460 -23.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.2931 T22: 0.3022 REMARK 3 T33: 0.3139 T12: -0.0020 REMARK 3 T13: 0.0532 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 4.5239 L22: 2.4495 REMARK 3 L33: 2.4686 L12: -0.4310 REMARK 3 L13: 0.0002 L23: -1.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.3056 S13: -0.9864 REMARK 3 S21: -0.3081 S22: -0.1680 S23: 0.2502 REMARK 3 S31: 0.6830 S32: -0.2201 S33: 0.1054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 1-19, 232-235 AND 512-516 ARE DISORDERED REMARK 4 REMARK 4 4AP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93360 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31403 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 66.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AOS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M MGSO4, 0.1M MES PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.03500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.87500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.87500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.01750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.87500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.87500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.05250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.87500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.01750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.87500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 171.05250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 345 TO LEU REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 HIS A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 ASN A 232 REMARK 465 VAL A 233 REMARK 465 PRO A 234 REMARK 465 LEU A 235 REMARK 465 ILE A 512 REMARK 465 PRO A 513 REMARK 465 GLY A 514 REMARK 465 ARG A 515 REMARK 465 PRO A 516 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 236 CG OD1 OD2 REMARK 470 ARG A 240 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 ARG A 279 CD NE CZ NH1 NH2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 ASP A 335 CG OD1 OD2 REMARK 470 LYS A 341 CD CE NZ REMARK 470 ARG A 492 NE CZ NH1 NH2 REMARK 470 GLU A 496 CG CD OE1 OE2 REMARK 470 ASN A 504 CG OD1 ND2 REMARK 470 ASN A 511 CG OD1 ND2 REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 110 NH2 ARG A 115 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 184 CG HIS A 184 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 302 -50.63 -141.02 REMARK 500 LYS A 334 -71.28 -53.72 REMARK 500 ASP A 335 60.08 -152.53 REMARK 500 MET A 397 -48.01 87.56 REMARK 500 ASN A 435 18.22 59.80 REMARK 500 SER A 446 -130.89 52.03 REMARK 500 ASN A 501 44.65 -91.89 REMARK 500 ASN A 504 44.53 -106.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2040 DISTANCE = 7.13 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 1553 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 1553 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AOS RELATED DB: PDB REMARK 900 OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP REMARK 900 RELATED ID: 4AOX RELATED DB: PDB REMARK 900 OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP REMARK 900 RELATED ID: 4AP1 RELATED DB: PDB REMARK 900 OXIDIZED STEROID MONOOXYGENASE BOUND TO NADP DBREF 4AP3 A 1 549 UNP O50641 O50641_RHORH 1 549 SEQADV 4AP3 LEU A 345 UNP O50641 THR 345 ENGINEERED MUTATION SEQRES 1 A 549 MET ASN GLY GLN HIS PRO ARG SER VAL VAL THR ALA PRO SEQRES 2 A 549 ASP ALA THR THR GLY THR THR SER TYR ASP VAL VAL VAL SEQRES 3 A 549 VAL GLY ALA GLY ILE ALA GLY LEU TYR ALA ILE HIS ARG SEQRES 4 A 549 PHE ARG SER GLN GLY LEU THR VAL ARG ALA PHE GLU ALA SEQRES 5 A 549 ALA SER GLY VAL GLY GLY VAL TRP TYR TRP ASN ARG TYR SEQRES 6 A 549 PRO GLY ALA ARG CYS ASP VAL GLU SER ILE ASP TYR SER SEQRES 7 A 549 TYR SER PHE SER PRO GLU LEU GLU GLN GLU TRP ASN TRP SEQRES 8 A 549 SER GLU LYS TYR ALA THR GLN PRO GLU ILE LEU ALA TYR SEQRES 9 A 549 LEU GLU HIS VAL ALA ASP ARG PHE ASP LEU ARG ARG ASP SEQRES 10 A 549 ILE ARG PHE ASP THR ARG VAL THR SER ALA VAL LEU ASP SEQRES 11 A 549 GLU GLU GLY LEU ARG TRP THR VAL ARG THR ASP ARG GLY SEQRES 12 A 549 ASP GLU VAL SER ALA ARG PHE LEU VAL VAL ALA ALA GLY SEQRES 13 A 549 PRO LEU SER ASN ALA ASN THR PRO ALA PHE ASP GLY LEU SEQRES 14 A 549 ASP ARG PHE THR GLY ASP ILE VAL HIS THR ALA ARG TRP SEQRES 15 A 549 PRO HIS ASP GLY VAL ASP PHE THR GLY LYS ARG VAL GLY SEQRES 16 A 549 VAL ILE GLY THR GLY SER SER GLY ILE GLN SER ILE PRO SEQRES 17 A 549 ILE ILE ALA GLU GLN ALA GLU GLN LEU PHE VAL PHE GLN SEQRES 18 A 549 ARG SER ALA ASN TYR SER ILE PRO ALA GLY ASN VAL PRO SEQRES 19 A 549 LEU ASP ASP ALA THR ARG ALA GLU GLN LYS ALA ASN TYR SEQRES 20 A 549 ALA GLU ARG ARG ARG LEU SER ARG GLU SER GLY GLY GLY SEQRES 21 A 549 SER PRO HIS ARG PRO HIS PRO LYS SER ALA LEU GLU VAL SEQRES 22 A 549 SER GLU GLU GLU ARG ARG ALA VAL TYR GLU GLU ARG TRP SEQRES 23 A 549 LYS LEU GLY GLY VAL LEU PHE SER LYS ALA PHE PRO ASP SEQRES 24 A 549 GLN LEU THR ASP PRO ALA ALA ASN ASP THR ALA ARG ALA SEQRES 25 A 549 PHE TRP GLU GLU LYS ILE ARG ALA VAL VAL ASP ASP PRO SEQRES 26 A 549 ALA VAL ALA GLU LEU LEU THR PRO LYS ASP HIS ALA ILE SEQRES 27 A 549 GLY ALA LYS ARG ILE VAL LEU ASP SER GLY TYR TYR GLU SEQRES 28 A 549 THR TYR ASN ARG ASP ASN VAL GLU LEU VAL ASP LEU ARG SEQRES 29 A 549 SER THR PRO ILE VAL GLY MET ASP GLU THR GLY ILE VAL SEQRES 30 A 549 THR THR GLY ALA HIS TYR ASP LEU ASP MET ILE VAL LEU SEQRES 31 A 549 ALA THR GLY PHE ASP ALA MET THR GLY SER LEU ASP LYS SEQRES 32 A 549 LEU GLU ILE VAL GLY ARG GLY GLY ARG THR LEU LYS GLU SEQRES 33 A 549 THR TRP ALA ALA GLY PRO ARG THR TYR LEU GLY LEU GLY SEQRES 34 A 549 ILE ASP GLY PHE PRO ASN PHE PHE ASN LEU THR GLY PRO SEQRES 35 A 549 GLY SER PRO SER VAL LEU ALA ASN MET VAL LEU HIS SER SEQRES 36 A 549 GLU LEU HIS VAL ASP TRP VAL ALA ASP ALA ILE ALA TYR SEQRES 37 A 549 LEU ASP ALA ARG GLY ALA ALA GLY ILE GLU GLY THR PRO SEQRES 38 A 549 GLU ALA VAL ALA ASP TRP VAL GLU GLU CYS ARG ASN ARG SEQRES 39 A 549 ALA GLU ALA SER LEU LEU ASN SER ALA ASN SER TRP TYR SEQRES 40 A 549 LEU GLY ALA ASN ILE PRO GLY ARG PRO ARG VAL PHE MET SEQRES 41 A 549 PRO PHE LEU GLY GLY PHE GLY VAL TYR ARG GLU ILE ILE SEQRES 42 A 549 THR GLU VAL ALA GLU SER GLY TYR LYS GLY PHE ALA ILE SEQRES 43 A 549 LEU GLU GLY HET SO4 A1550 5 HET SO4 A1551 5 HET FAD A1552 53 HET NAP A1553 18 HETNAM SO4 SULFATE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 FAD C27 H33 N9 O15 P2 FORMUL 5 NAP C21 H28 N7 O17 P3 FORMUL 6 HOH *146(H2 O) HELIX 1 1 GLY A 30 GLN A 43 1 14 HELIX 2 2 GLY A 58 ASN A 63 1 6 HELIX 3 3 SER A 82 TRP A 89 1 8 HELIX 4 4 THR A 97 PHE A 112 1 16 HELIX 5 5 LEU A 114 ARG A 116 5 3 HELIX 6 6 GLY A 168 PHE A 172 5 5 HELIX 7 7 ALA A 180 TRP A 182 5 3 HELIX 8 8 GLY A 200 ALA A 214 1 15 HELIX 9 9 ASP A 236 ASN A 246 1 11 HELIX 10 10 ASN A 246 SER A 257 1 12 HELIX 11 11 SER A 274 GLY A 289 1 16 HELIX 12 12 GLY A 289 SER A 294 1 6 HELIX 13 13 ASP A 303 VAL A 322 1 20 HELIX 14 14 ASP A 324 THR A 332 1 9 HELIX 15 15 TYR A 349 ARG A 355 5 7 HELIX 16 16 SER A 400 LEU A 404 5 5 HELIX 17 17 GLY A 408 ARG A 412 5 5 HELIX 18 18 THR A 413 TRP A 418 1 6 HELIX 19 19 PRO A 445 ALA A 449 5 5 HELIX 20 20 ASN A 450 ARG A 472 1 23 HELIX 21 21 THR A 480 ALA A 497 1 18 HELIX 22 22 GLY A 525 SER A 539 1 15 SHEET 1 AA 5 ILE A 118 ARG A 119 0 SHEET 2 AA 5 VAL A 47 PHE A 50 1 O ALA A 49 N ARG A 119 SHEET 3 AA 5 SER A 21 VAL A 27 1 O VAL A 24 N ARG A 48 SHEET 4 AA 5 GLU A 145 VAL A 153 1 O SER A 147 N TYR A 22 SHEET 5 AA 5 PHE A 436 ASN A 438 -1 O PHE A 437 N VAL A 153 SHEET 1 AB 7 ILE A 118 ARG A 119 0 SHEET 2 AB 7 VAL A 47 PHE A 50 1 O ALA A 49 N ARG A 119 SHEET 3 AB 7 SER A 21 VAL A 27 1 O VAL A 24 N ARG A 48 SHEET 4 AB 7 GLU A 145 VAL A 153 1 O SER A 147 N TYR A 22 SHEET 5 AB 7 ARG A 135 THR A 140 -1 O TRP A 136 N ALA A 148 SHEET 6 AB 7 VAL A 124 ASP A 130 -1 N THR A 125 O ARG A 139 SHEET 7 AB 7 GLU A 405 VAL A 407 1 O GLU A 405 N ALA A 127 SHEET 1 AC 2 PHE A 436 ASN A 438 0 SHEET 2 AC 2 GLU A 145 VAL A 153 -1 O LEU A 151 N PHE A 437 SHEET 1 AD 2 LEU A 158 ASN A 160 0 SHEET 2 AD 2 PHE A 394 ALA A 396 -1 O ASP A 395 N SER A 159 SHEET 1 AE 5 ASP A 175 HIS A 178 0 SHEET 2 AE 5 MET A 387 LEU A 390 1 O ILE A 388 N VAL A 177 SHEET 3 AE 5 ARG A 193 ILE A 197 1 O GLY A 195 N VAL A 389 SHEET 4 AE 5 GLN A 216 GLN A 221 1 O GLN A 216 N VAL A 194 SHEET 5 AE 5 VAL A 358 ASP A 362 1 O GLU A 359 N VAL A 219 SHEET 1 AF 2 SER A 227 PRO A 229 0 SHEET 2 AF 2 VAL A 344 ASP A 346 1 O VAL A 344 N ILE A 228 SHEET 1 AG 3 ILE A 368 ASP A 372 0 SHEET 2 AG 3 GLY A 375 THR A 378 -1 O GLY A 375 N ASP A 372 SHEET 3 AG 3 HIS A 382 ASP A 384 -1 O TYR A 383 N ILE A 376 SHEET 1 AH 2 ALA A 474 GLY A 479 0 SHEET 2 AH 2 PHE A 544 GLU A 548 -1 O ALA A 545 N GLU A 478 SITE 1 AC1 4 ASP A 113 ARG A 115 ARG A 116 HOH A2051 SITE 1 AC2 3 ARG A 355 ASP A 356 HOH A2106 SITE 1 AC3 37 VAL A 27 GLY A 28 GLY A 30 ILE A 31 SITE 2 AC3 37 ALA A 32 PHE A 50 GLU A 51 ALA A 52 SITE 3 AC3 37 GLY A 58 VAL A 59 TRP A 60 TRP A 62 SITE 4 AC3 37 ASN A 63 TYR A 65 ARG A 69 CYS A 70 SITE 5 AC3 37 ASP A 71 VAL A 72 TYR A 77 THR A 122 SITE 6 AC3 37 ARG A 123 VAL A 124 ALA A 154 ALA A 155 SITE 7 AC3 37 GLY A 156 LEU A 158 LEU A 404 ALA A 449 SITE 8 AC3 37 ASN A 450 MET A 451 NAP A1553 HOH A2003 SITE 9 AC3 37 HOH A2004 HOH A2058 HOH A2066 HOH A2070 SITE 10 AC3 37 HOH A2127 SITE 1 AC4 10 ASP A 71 LEU A 158 GLY A 200 SER A 201 SITE 2 AC4 10 ARG A 342 GLY A 393 PHE A 394 TRP A 506 SITE 3 AC4 10 FAD A1552 HOH A2091 CRYST1 81.750 81.750 228.070 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012232 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012232 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004385 0.00000