HEADER TRANSFERASE 30-MAR-12 4AP5 TITLE CRYSTAL STRUCTURE OF HUMAN POFUT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEPTIDE-O-FUCOSYLTRANSFERASE 2, O-FUCT-2, PROTEIN O- COMPND 5 FUCOSYLTRANSFERASE 2; COMPND 6 EC: 2.4.1.221; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PSECTAGB KEYWDS TRANSFERASE, GT-B, GT68 EXPDTA X-RAY DIFFRACTION AUTHOR C.CHEN,J.J.KEUSCH,D.KLEIN,D.HESS,J.HOFSTEENGE,H.GUT REVDAT 4 06-NOV-24 4AP5 1 HETSYN REVDAT 3 29-JUL-20 4AP5 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 26-SEP-12 4AP5 1 JRNL REVDAT 1 08-AUG-12 4AP5 0 JRNL AUTH C.I.CHEN,J.J.KEUSCH,D.KLEIN,D.HESS,J.HOFSTEENGE,H.GUT JRNL TITL STRUCTURE OF HUMAN POFUT2: INSIGHTS INTO THROMBOSPONDIN TYPE JRNL TITL 2 1 REPEAT FOLD AND O-FUCOSYLATION. JRNL REF EMBO J. V. 31 3183 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22588082 JRNL DOI 10.1038/EMBOJ.2012.143 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 31318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6584 - 6.6564 1.00 2971 152 0.1687 0.1898 REMARK 3 2 6.6564 - 5.2932 1.00 2848 155 0.1557 0.2133 REMARK 3 3 5.2932 - 4.6270 1.00 2831 156 0.1207 0.1684 REMARK 3 4 4.6270 - 4.2052 1.00 2778 170 0.1195 0.1927 REMARK 3 5 4.2052 - 3.9045 1.00 2808 141 0.1508 0.2245 REMARK 3 6 3.9045 - 3.6748 1.00 2784 131 0.1835 0.2553 REMARK 3 7 3.6748 - 3.4910 1.00 2770 146 0.1987 0.2735 REMARK 3 8 3.4910 - 3.3393 1.00 2770 152 0.2074 0.3036 REMARK 3 9 3.3393 - 3.2109 1.00 2756 137 0.2311 0.2968 REMARK 3 10 3.2109 - 3.1002 0.89 2475 141 0.2758 0.3895 REMARK 3 11 3.1002 - 3.0034 0.70 1934 112 0.3075 0.3586 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.27 REMARK 3 B_SOL : 11.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.55830 REMARK 3 B22 (A**2) : 3.55830 REMARK 3 B33 (A**2) : -7.11660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6764 REMARK 3 ANGLE : 1.275 9161 REMARK 3 CHIRALITY : 0.094 947 REMARK 3 PLANARITY : 0.006 1171 REMARK 3 DIHEDRAL : 16.976 2531 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 41:243) REMARK 3 ORIGIN FOR THE GROUP (A): 43.9852 -25.1442 -12.9533 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0955 REMARK 3 T33: 0.0460 T12: -0.0607 REMARK 3 T13: -0.0522 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.0867 L22: 1.9749 REMARK 3 L33: 1.7404 L12: -0.0808 REMARK 3 L13: -0.3454 L23: 0.4515 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: 0.1489 S13: -0.0111 REMARK 3 S21: -0.2302 S22: 0.0329 S23: 0.0254 REMARK 3 S31: -0.0629 S32: -0.0070 S33: 0.0181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 244:429) REMARK 3 ORIGIN FOR THE GROUP (A): 53.8713 -7.9037 8.0239 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.0843 REMARK 3 T33: 0.0903 T12: -0.0711 REMARK 3 T13: -0.0207 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 1.5666 L22: 2.3602 REMARK 3 L33: 1.8241 L12: 0.5797 REMARK 3 L13: 0.1734 L23: 0.6676 REMARK 3 S TENSOR REMARK 3 S11: -0.0914 S12: -0.0092 S13: 0.1179 REMARK 3 S21: 0.0711 S22: 0.0428 S23: -0.1597 REMARK 3 S31: -0.2343 S32: 0.0862 S33: 0.0317 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 41:243) REMARK 3 ORIGIN FOR THE GROUP (A): 74.3836 -38.9335 -7.8663 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.5246 REMARK 3 T33: 0.1639 T12: 0.1275 REMARK 3 T13: -0.0794 T23: -0.1564 REMARK 3 L TENSOR REMARK 3 L11: 1.1425 L22: 0.8769 REMARK 3 L33: 1.5692 L12: 0.1774 REMARK 3 L13: 0.5064 L23: 0.6284 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -0.1344 S13: 0.0741 REMARK 3 S21: 0.1569 S22: 0.2167 S23: -0.2383 REMARK 3 S31: 0.2271 S32: 0.5761 S33: -0.0455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 244:429) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7987 -56.3249 -28.6723 REMARK 3 T TENSOR REMARK 3 T11: 0.4013 T22: 0.2939 REMARK 3 T33: 0.0966 T12: 0.1071 REMARK 3 T13: -0.0442 T23: -0.0718 REMARK 3 L TENSOR REMARK 3 L11: 0.9148 L22: 0.8926 REMARK 3 L33: 2.3524 L12: -0.0950 REMARK 3 L13: 0.7317 L23: 0.3745 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0553 S13: -0.2038 REMARK 3 S21: 0.2408 S22: 0.1623 S23: -0.1651 REMARK 3 S31: 0.7367 S32: 0.4444 S33: -0.1200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31375 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20000, 0.02 M TRIS PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.81800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.40900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.40900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.81800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 25 REMARK 465 PHE A 26 REMARK 465 TRP A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 ALA A 32 REMARK 465 ALA A 33 REMARK 465 ASP A 34 REMARK 465 ILE A 35 REMARK 465 LEU A 36 REMARK 465 SER A 37 REMARK 465 GLY A 38 REMARK 465 ALA A 39 REMARK 465 ALA A 40 REMARK 465 SER B 22 REMARK 465 GLY B 23 REMARK 465 GLN B 24 REMARK 465 GLU B 25 REMARK 465 PHE B 26 REMARK 465 TRP B 27 REMARK 465 PRO B 28 REMARK 465 GLY B 29 REMARK 465 GLN B 30 REMARK 465 SER B 31 REMARK 465 ALA B 32 REMARK 465 ALA B 33 REMARK 465 ASP B 34 REMARK 465 ILE B 35 REMARK 465 LEU B 36 REMARK 465 SER B 37 REMARK 465 GLY B 38 REMARK 465 ALA B 39 REMARK 465 ALA B 40 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 378 NH2 ARG B 397 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2030 O HOH B 2047 3655 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 96 -12.76 69.84 REMARK 500 PHE A 107 -54.73 -125.36 REMARK 500 ASN A 116 -62.67 -93.88 REMARK 500 GLN A 196 -59.91 -120.89 REMARK 500 ASP A 226 -72.44 -58.19 REMARK 500 ILE A 267 78.99 -118.82 REMARK 500 LEU A 361 -62.76 -98.46 REMARK 500 LYS A 363 -154.39 50.57 REMARK 500 LYS A 417 -73.42 -59.79 REMARK 500 THR B 76 -62.74 -129.26 REMARK 500 HIS B 98 36.58 38.07 REMARK 500 PHE B 107 -57.00 -126.91 REMARK 500 ASN B 116 -60.06 -97.07 REMARK 500 GLU B 173 -2.47 82.90 REMARK 500 GLN B 196 -58.39 -124.35 REMARK 500 ASP B 226 -70.85 -72.75 REMARK 500 ARG B 256 -72.68 -81.02 REMARK 500 LYS B 363 -153.24 52.51 REMARK 500 THR B 407 -61.24 -100.95 REMARK 500 CYS B 419 70.36 44.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AP6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN POFUT2 E54A MUTANT IN COMPLEX WITH GDP- REMARK 900 FUCOSE DBREF 4AP5 A 22 429 UNP Q9Y2G5 OFUT2_HUMAN 22 429 DBREF 4AP5 B 22 429 UNP Q9Y2G5 OFUT2_HUMAN 22 429 SEQRES 1 A 408 SER GLY GLN GLU PHE TRP PRO GLY GLN SER ALA ALA ASP SEQRES 2 A 408 ILE LEU SER GLY ALA ALA SER ARG ARG ARG TYR LEU LEU SEQRES 3 A 408 TYR ASP VAL ASN PRO PRO GLU GLY PHE ASN LEU ARG ARG SEQRES 4 A 408 ASP VAL TYR ILE ARG ILE ALA SER LEU LEU LYS THR LEU SEQRES 5 A 408 LEU LYS THR GLU GLU TRP VAL LEU VAL LEU PRO PRO TRP SEQRES 6 A 408 GLY ARG LEU TYR HIS TRP GLN SER PRO ASP ILE HIS GLN SEQRES 7 A 408 VAL ARG ILE PRO TRP SER GLU PHE PHE ASP LEU PRO SER SEQRES 8 A 408 LEU ASN LYS ASN ILE PRO VAL ILE GLU TYR GLU GLN PHE SEQRES 9 A 408 ILE ALA GLU SER GLY GLY PRO PHE ILE ASP GLN VAL TYR SEQRES 10 A 408 VAL LEU GLN SER TYR ALA GLU GLY TRP LYS GLU GLY THR SEQRES 11 A 408 TRP GLU GLU LYS VAL ASP GLU ARG PRO CYS ILE ASP GLN SEQRES 12 A 408 LEU LEU TYR SER GLN ASP LYS HIS GLU TYR TYR ARG GLY SEQRES 13 A 408 TRP PHE TRP GLY TYR GLU GLU THR ARG GLY LEU ASN VAL SEQRES 14 A 408 SER CYS LEU SER VAL GLN GLY SER ALA SER ILE VAL ALA SEQRES 15 A 408 PRO LEU LEU LEU ARG ASN THR SER ALA ARG SER VAL MET SEQRES 16 A 408 LEU ASP ARG ALA GLU ASN LEU LEU HIS ASP HIS TYR GLY SEQRES 17 A 408 GLY LYS GLU TYR TRP ASP THR ARG ARG SER MET VAL PHE SEQRES 18 A 408 ALA ARG HIS LEU ARG GLU VAL GLY ASP GLU PHE ARG SER SEQRES 19 A 408 ARG HIS LEU ASN SER THR ASP ASP ALA ASP ARG ILE PRO SEQRES 20 A 408 PHE GLN GLU ASP TRP MET LYS MET LYS VAL LYS LEU GLY SEQRES 21 A 408 SER ALA LEU GLY GLY PRO TYR LEU GLY VAL HIS LEU ARG SEQRES 22 A 408 ARG LYS ASP PHE ILE TRP GLY HIS ARG GLN ASP VAL PRO SEQRES 23 A 408 SER LEU GLU GLY ALA VAL ARG LYS ILE ARG SER LEU MET SEQRES 24 A 408 LYS THR HIS ARG LEU ASP LYS VAL PHE VAL ALA THR ASP SEQRES 25 A 408 ALA VAL ARG LYS GLU TYR GLU GLU LEU LYS LYS LEU LEU SEQRES 26 A 408 PRO GLU MET VAL ARG PHE GLU PRO THR TRP GLU GLU LEU SEQRES 27 A 408 GLU LEU TYR LYS ASP GLY GLY VAL ALA ILE ILE ASP GLN SEQRES 28 A 408 TRP ILE CYS ALA HIS ALA ARG PHE PHE ILE GLY THR SER SEQRES 29 A 408 VAL SER THR PHE SER PHE ARG ILE HIS GLU GLU ARG GLU SEQRES 30 A 408 ILE LEU GLY LEU ASP PRO LYS THR THR TYR ASN ARG PHE SEQRES 31 A 408 CYS GLY ASP GLN GLU LYS ALA CYS GLU GLN PRO THR HIS SEQRES 32 A 408 TRP LYS ILE THR TYR SEQRES 1 B 408 SER GLY GLN GLU PHE TRP PRO GLY GLN SER ALA ALA ASP SEQRES 2 B 408 ILE LEU SER GLY ALA ALA SER ARG ARG ARG TYR LEU LEU SEQRES 3 B 408 TYR ASP VAL ASN PRO PRO GLU GLY PHE ASN LEU ARG ARG SEQRES 4 B 408 ASP VAL TYR ILE ARG ILE ALA SER LEU LEU LYS THR LEU SEQRES 5 B 408 LEU LYS THR GLU GLU TRP VAL LEU VAL LEU PRO PRO TRP SEQRES 6 B 408 GLY ARG LEU TYR HIS TRP GLN SER PRO ASP ILE HIS GLN SEQRES 7 B 408 VAL ARG ILE PRO TRP SER GLU PHE PHE ASP LEU PRO SER SEQRES 8 B 408 LEU ASN LYS ASN ILE PRO VAL ILE GLU TYR GLU GLN PHE SEQRES 9 B 408 ILE ALA GLU SER GLY GLY PRO PHE ILE ASP GLN VAL TYR SEQRES 10 B 408 VAL LEU GLN SER TYR ALA GLU GLY TRP LYS GLU GLY THR SEQRES 11 B 408 TRP GLU GLU LYS VAL ASP GLU ARG PRO CYS ILE ASP GLN SEQRES 12 B 408 LEU LEU TYR SER GLN ASP LYS HIS GLU TYR TYR ARG GLY SEQRES 13 B 408 TRP PHE TRP GLY TYR GLU GLU THR ARG GLY LEU ASN VAL SEQRES 14 B 408 SER CYS LEU SER VAL GLN GLY SER ALA SER ILE VAL ALA SEQRES 15 B 408 PRO LEU LEU LEU ARG ASN THR SER ALA ARG SER VAL MET SEQRES 16 B 408 LEU ASP ARG ALA GLU ASN LEU LEU HIS ASP HIS TYR GLY SEQRES 17 B 408 GLY LYS GLU TYR TRP ASP THR ARG ARG SER MET VAL PHE SEQRES 18 B 408 ALA ARG HIS LEU ARG GLU VAL GLY ASP GLU PHE ARG SER SEQRES 19 B 408 ARG HIS LEU ASN SER THR ASP ASP ALA ASP ARG ILE PRO SEQRES 20 B 408 PHE GLN GLU ASP TRP MET LYS MET LYS VAL LYS LEU GLY SEQRES 21 B 408 SER ALA LEU GLY GLY PRO TYR LEU GLY VAL HIS LEU ARG SEQRES 22 B 408 ARG LYS ASP PHE ILE TRP GLY HIS ARG GLN ASP VAL PRO SEQRES 23 B 408 SER LEU GLU GLY ALA VAL ARG LYS ILE ARG SER LEU MET SEQRES 24 B 408 LYS THR HIS ARG LEU ASP LYS VAL PHE VAL ALA THR ASP SEQRES 25 B 408 ALA VAL ARG LYS GLU TYR GLU GLU LEU LYS LYS LEU LEU SEQRES 26 B 408 PRO GLU MET VAL ARG PHE GLU PRO THR TRP GLU GLU LEU SEQRES 27 B 408 GLU LEU TYR LYS ASP GLY GLY VAL ALA ILE ILE ASP GLN SEQRES 28 B 408 TRP ILE CYS ALA HIS ALA ARG PHE PHE ILE GLY THR SER SEQRES 29 B 408 VAL SER THR PHE SER PHE ARG ILE HIS GLU GLU ARG GLU SEQRES 30 B 408 ILE LEU GLY LEU ASP PRO LYS THR THR TYR ASN ARG PHE SEQRES 31 B 408 CYS GLY ASP GLN GLU LYS ALA CYS GLU GLN PRO THR HIS SEQRES 32 B 408 TRP LYS ILE THR TYR MODRES 4AP5 ASN A 189 ASN GLYCOSYLATION SITE MODRES 4AP5 ASN A 259 ASN GLYCOSYLATION SITE MODRES 4AP5 ASN B 189 ASN GLYCOSYLATION SITE MODRES 4AP5 ASN B 259 ASN GLYCOSYLATION SITE HET NAG A1430 14 HET NAG A1431 14 HET CL A1432 1 HET NAG B1430 14 HET NAG B1431 14 HET MG B1432 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CL CL 1- FORMUL 8 MG MG 2+ FORMUL 9 HOH *116(H2 O) HELIX 1 1 GLY A 55 LYS A 75 1 21 HELIX 2 2 TYR A 90 SER A 94 5 5 HELIX 3 3 PRO A 103 PHE A 107 5 5 HELIX 4 4 ASP A 109 LYS A 115 1 7 HELIX 5 5 TYR A 122 SER A 129 1 8 HELIX 6 6 TRP A 178 TYR A 182 5 5 HELIX 7 7 ALA A 199 ILE A 201 5 3 HELIX 8 8 VAL A 202 ASN A 209 1 8 HELIX 9 9 ARG A 219 LEU A 223 5 5 HELIX 10 10 GLY A 230 SER A 239 1 10 HELIX 11 11 ALA A 243 ASN A 259 1 17 HELIX 12 12 ASP A 272 MET A 276 5 5 HELIX 13 13 SER A 308 ARG A 324 1 17 HELIX 14 14 VAL A 335 LEU A 346 1 12 HELIX 15 15 THR A 355 HIS A 377 1 23 HELIX 16 16 SER A 387 GLY A 401 1 15 HELIX 17 17 ASP A 403 THR A 407 5 5 HELIX 18 18 GLY B 55 LEU B 74 1 20 HELIX 19 19 TYR B 90 SER B 94 5 5 HELIX 20 20 PRO B 103 PHE B 107 5 5 HELIX 21 21 ASP B 109 LYS B 115 1 7 HELIX 22 22 TYR B 122 SER B 129 1 8 HELIX 23 23 TRP B 178 TYR B 182 5 5 HELIX 24 24 ALA B 199 ILE B 201 5 3 HELIX 25 25 VAL B 202 ASN B 209 1 8 HELIX 26 26 ARG B 219 LEU B 223 5 5 HELIX 27 27 GLY B 230 SER B 239 1 10 HELIX 28 28 ALA B 243 LEU B 258 1 16 HELIX 29 29 SER B 308 HIS B 323 1 16 HELIX 30 30 VAL B 335 LEU B 346 1 12 HELIX 31 31 THR B 355 HIS B 377 1 23 HELIX 32 32 SER B 387 GLY B 401 1 15 HELIX 33 33 ASP B 403 THR B 407 5 5 SHEET 1 AA 7 VAL A 119 GLU A 121 0 SHEET 2 AA 7 TRP A 79 LEU A 83 1 O LEU A 81 N ILE A 120 SHEET 3 AA 7 ARG A 44 TYR A 48 1 O ARG A 44 N VAL A 80 SHEET 4 AA 7 SER A 214 ASP A 218 1 O VAL A 215 N LEU A 47 SHEET 5 AA 7 PHE A 133 GLN A 141 1 O GLN A 136 N MET A 216 SHEET 6 AA 7 ARG A 186 VAL A 195 1 O ARG A 186 N ILE A 134 SHEET 7 AA 7 VAL A 156 ARG A 159 -1 O ASP A 157 N SER A 194 SHEET 1 AB 2 SER A 168 GLN A 169 0 SHEET 2 AB 2 TYR A 175 ARG A 176 -1 O ARG A 176 N SER A 168 SHEET 1 AC 4 MET A 349 VAL A 350 0 SHEET 2 AC 4 VAL A 328 THR A 332 1 O VAL A 328 N VAL A 350 SHEET 3 AC 4 GLY A 286 LEU A 293 1 O LEU A 289 N PHE A 329 SHEET 4 AC 4 ALA A 378 ILE A 382 1 N ARG A 379 O TYR A 288 SHEET 1 BA 7 VAL B 119 GLU B 121 0 SHEET 2 BA 7 TRP B 79 LEU B 83 1 O LEU B 81 N ILE B 120 SHEET 3 BA 7 ARG B 44 TYR B 48 1 O ARG B 44 N VAL B 80 SHEET 4 BA 7 SER B 214 ASP B 218 1 O VAL B 215 N LEU B 47 SHEET 5 BA 7 PHE B 133 GLN B 141 1 O GLN B 136 N MET B 216 SHEET 6 BA 7 ARG B 186 VAL B 195 1 O ARG B 186 N ILE B 134 SHEET 7 BA 7 VAL B 156 ARG B 159 -1 O ASP B 157 N SER B 194 SHEET 1 BB 2 SER B 168 GLN B 169 0 SHEET 2 BB 2 TYR B 175 ARG B 176 -1 O ARG B 176 N SER B 168 SHEET 1 BC 4 MET B 349 ARG B 351 0 SHEET 2 BC 4 LYS B 327 THR B 332 1 O VAL B 328 N VAL B 350 SHEET 3 BC 4 GLY B 286 LEU B 293 1 O PRO B 287 N LYS B 327 SHEET 4 BC 4 ALA B 378 ILE B 382 1 N ARG B 379 O TYR B 288 SSBOND 1 CYS A 161 CYS A 192 1555 1555 2.04 SSBOND 2 CYS A 412 CYS A 419 1555 1555 2.04 SSBOND 3 CYS B 161 CYS B 192 1555 1555 2.03 SSBOND 4 CYS B 412 CYS B 419 1555 1555 2.04 LINK ND2 ASN A 189 C1 NAG A1430 1555 1555 1.44 LINK ND2 ASN A 259 C1 NAG A1431 1555 1555 1.44 LINK ND2 ASN B 189 C1 NAG B1430 1555 1555 1.43 LINK ND2 ASN B 259 C1 NAG B1431 1555 1555 1.45 CRYST1 118.628 118.628 196.227 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008430 0.004867 0.000000 0.00000 SCALE2 0.000000 0.009734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005096 0.00000 MTRIX1 1 -0.692500 0.485800 -0.533300 110.20000 1 MTRIX2 1 0.462700 -0.268000 -0.845000 -76.68000 1 MTRIX3 1 -0.553500 -0.831900 -0.039230 -4.60100 1