HEADER DIESTER-BINDING PROTEIN 13-APR-12 4AQ4 TITLE SUBSTRATE BOUND SN-GLYCEROL-3-PHOSPHATE BINDING PERIPLASMIC PROTEIN TITLE 2 UGPB FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SN-GLYCEROL-3-PHOSPHATE-BINDING PERIPLASMIC PROTEIN UGPB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFSA131 KEYWDS DIESTER-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.WUTTGE,M.BOMMER,F.JAEGER,B.M.MARTINS,S.JACOB,A.LICHT,F.SCHEFFEL, AUTHOR 2 H.DOBBEK,E.SCHNEIDER REVDAT 4 08-MAY-24 4AQ4 1 REMARK LINK REVDAT 3 06-MAR-19 4AQ4 1 REMARK REVDAT 2 17-JUL-13 4AQ4 1 JRNL REVDAT 1 17-OCT-12 4AQ4 0 JRNL AUTH S.WUTTGE,M.BOMMER,F.JAGER,B.M.MARTINS,S.JACOB,A.LICHT, JRNL AUTH 2 F.SCHEFFEL,H.DOBBEK,E.SCHNEIDER JRNL TITL DETERMINANTS OF SUBSTRATE SPECIFICITY AND BIOCHEMICAL JRNL TITL 2 PROPERTIES OF THE SN-GLYCEROL-3-PHOSPHATE ATP BINDING JRNL TITL 3 CASSETTE TRANSPORTER (UGPB-AEC(2) ) OF ESCHERICHIA COLI. JRNL REF MOL.MICROBIOL. V. 86 908 2012 JRNL REFN ISSN 0950-382X JRNL PMID 23013274 JRNL DOI 10.1111/MMI.12025 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 88812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3876 - 5.5885 1.00 2812 149 0.1725 0.1893 REMARK 3 2 5.5885 - 4.4369 1.00 2806 145 0.1551 0.1890 REMARK 3 3 4.4369 - 3.8764 1.00 2834 155 0.1389 0.1449 REMARK 3 4 3.8764 - 3.5221 1.00 2793 154 0.1428 0.1770 REMARK 3 5 3.5221 - 3.2697 1.00 2822 149 0.1525 0.1594 REMARK 3 6 3.2697 - 3.0770 1.00 2806 145 0.1609 0.1873 REMARK 3 7 3.0770 - 2.9229 1.00 2830 147 0.1584 0.2047 REMARK 3 8 2.9229 - 2.7957 1.00 2854 148 0.1616 0.2039 REMARK 3 9 2.7957 - 2.6881 1.00 2754 147 0.1714 0.1904 REMARK 3 10 2.6881 - 2.5953 1.00 2839 151 0.1630 0.2113 REMARK 3 11 2.5953 - 2.5142 1.00 2841 152 0.1593 0.1608 REMARK 3 12 2.5142 - 2.4423 1.00 2820 147 0.1596 0.2203 REMARK 3 13 2.4423 - 2.3780 1.00 2850 150 0.1632 0.1896 REMARK 3 14 2.3780 - 2.3200 1.00 2819 143 0.1630 0.1978 REMARK 3 15 2.3200 - 2.2673 1.00 2797 154 0.1643 0.1908 REMARK 3 16 2.2673 - 2.2190 1.00 2842 155 0.1658 0.2501 REMARK 3 17 2.2190 - 2.1746 1.00 2783 146 0.1554 0.1735 REMARK 3 18 2.1746 - 2.1336 1.00 2818 151 0.1631 0.2021 REMARK 3 19 2.1336 - 2.0955 1.00 2860 151 0.1652 0.2033 REMARK 3 20 2.0955 - 2.0600 1.00 2748 148 0.1650 0.1636 REMARK 3 21 2.0600 - 2.0267 1.00 2866 156 0.1713 0.2227 REMARK 3 22 2.0267 - 1.9956 1.00 2783 145 0.1713 0.2120 REMARK 3 23 1.9956 - 1.9662 1.00 2837 145 0.1749 0.2092 REMARK 3 24 1.9662 - 1.9385 1.00 2793 152 0.1704 0.1870 REMARK 3 25 1.9385 - 1.9123 1.00 2860 150 0.1793 0.2476 REMARK 3 26 1.9123 - 1.8875 1.00 2774 145 0.1951 0.2246 REMARK 3 27 1.8875 - 1.8639 1.00 2867 150 0.1950 0.2345 REMARK 3 28 1.8639 - 1.8414 1.00 2774 145 0.2012 0.2313 REMARK 3 29 1.8414 - 1.8200 1.00 2844 151 0.2201 0.2558 REMARK 3 30 1.8200 - 1.7996 0.93 2622 138 0.2347 0.2705 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 38.63 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.13760 REMARK 3 B22 (A**2) : 1.13760 REMARK 3 B33 (A**2) : -2.27510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3397 REMARK 3 ANGLE : 1.019 4598 REMARK 3 CHIRALITY : 0.070 476 REMARK 3 PLANARITY : 0.004 601 REMARK 3 DIHEDRAL : 13.615 1258 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ -1:55) REMARK 3 ORIGIN FOR THE GROUP (A): 56.5121 15.0927 168.9063 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.1600 REMARK 3 T33: 0.1466 T12: 0.0336 REMARK 3 T13: 0.0595 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.7821 L22: 0.6416 REMARK 3 L33: 0.7945 L12: -0.3815 REMARK 3 L13: -0.2995 L23: 0.3114 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: 0.0057 S13: -0.1371 REMARK 3 S21: 0.1023 S22: 0.0427 S23: -0.0462 REMARK 3 S31: 0.2670 S32: 0.1705 S33: 0.0265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 56:135) REMARK 3 ORIGIN FOR THE GROUP (A): 46.1498 26.3792 167.7283 REMARK 3 T TENSOR REMARK 3 T11: 0.0981 T22: 0.1340 REMARK 3 T33: 0.1418 T12: 0.0035 REMARK 3 T13: 0.0652 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.0868 L22: 0.4545 REMARK 3 L33: 1.1955 L12: -0.0874 REMARK 3 L13: -0.6785 L23: 0.2267 REMARK 3 S TENSOR REMARK 3 S11: 0.0404 S12: 0.1640 S13: 0.0536 REMARK 3 S21: -0.0001 S22: -0.0415 S23: 0.0582 REMARK 3 S31: -0.1080 S32: -0.0915 S33: -0.0395 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 136:159) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7137 18.5614 189.2584 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.3021 REMARK 3 T33: 0.3058 T12: -0.0820 REMARK 3 T13: 0.1617 T23: -0.0856 REMARK 3 L TENSOR REMARK 3 L11: 0.7557 L22: 0.5600 REMARK 3 L33: 0.6858 L12: 0.6208 REMARK 3 L13: -0.3790 L23: -0.1536 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.0098 S13: -0.0567 REMARK 3 S21: 0.1224 S22: -0.0867 S23: 0.2779 REMARK 3 S31: 0.1912 S32: -0.3342 S33: -0.4210 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 160:242) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0492 28.2930 187.1106 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1779 REMARK 3 T33: 0.1510 T12: 0.0012 REMARK 3 T13: 0.0904 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.8364 L22: 0.6450 REMARK 3 L33: 0.9237 L12: -0.0048 REMARK 3 L13: -0.2844 L23: 0.4759 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1060 S13: 0.0216 REMARK 3 S21: 0.1637 S22: -0.0534 S23: 0.1073 REMARK 3 S31: 0.0189 S32: -0.1185 S33: -0.0086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 243:282) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8049 19.8122 179.7796 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1957 REMARK 3 T33: 0.1936 T12: -0.0275 REMARK 3 T13: 0.0864 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 0.8914 L22: 0.5215 REMARK 3 L33: 1.5245 L12: 0.4014 REMARK 3 L13: -0.2549 L23: -0.3456 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.1068 S13: -0.0448 REMARK 3 S21: 0.0213 S22: -0.0666 S23: 0.1532 REMARK 3 S31: 0.0721 S32: -0.2988 S33: 0.0178 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 283:309) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4811 22.2427 161.3362 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.1639 REMARK 3 T33: 0.1397 T12: 0.0029 REMARK 3 T13: 0.0675 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.9111 L22: 0.4487 REMARK 3 L33: 0.7795 L12: -0.1426 REMARK 3 L13: -0.5391 L23: 0.1501 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.0763 S13: 0.0275 REMARK 3 S21: -0.0728 S22: 0.0270 S23: -0.0753 REMARK 3 S31: -0.0465 S32: 0.0890 S33: 0.0568 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 310:336) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1541 16.1143 162.3939 REMARK 3 T TENSOR REMARK 3 T11: 0.1078 T22: 0.2244 REMARK 3 T33: 0.1783 T12: -0.0239 REMARK 3 T13: 0.0369 T23: -0.0593 REMARK 3 L TENSOR REMARK 3 L11: 1.3167 L22: 1.0457 REMARK 3 L33: 1.7022 L12: 0.3477 REMARK 3 L13: -0.0741 L23: 0.1219 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.3019 S13: -0.0603 REMARK 3 S21: -0.0822 S22: -0.0920 S23: 0.1422 REMARK 3 S31: 0.0282 S32: -0.2310 S33: 0.0272 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 337:414) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5922 32.7899 181.4422 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1552 REMARK 3 T33: 0.1697 T12: 0.0076 REMARK 3 T13: 0.0708 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.6226 L22: 0.7329 REMARK 3 L33: 1.2423 L12: -0.2034 REMARK 3 L13: -0.4762 L23: 0.2868 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: 0.0218 S13: 0.0931 REMARK 3 S21: 0.0440 S22: -0.0210 S23: -0.0037 REMARK 3 S31: -0.2029 S32: -0.0556 S33: -0.0687 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AQ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-11; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : BESSY; BESSY REMARK 200 BEAMLINE : 14.1; 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918410; 1.9 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88817 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION (1:1 MIX): 5 MM REMARK 280 COBALT(II) CHLORIDE, 5 MM NICKEL(II) CHLORIDE, 5 MM CADMIUM REMARK 280 CHLORIDE, 5 MM MAGNESIUM CHLORIDE, 0.1 M HEPES PH 7.5, 12% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, 0.3% N-OCTYL-BETA-D-GLUCOSIDE, 5MM SN- REMARK 280 GLYCEROL-3-PHOSPHATE, 1% GLYCEROL, 90 MG/ML PROTEIN, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 203.44700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.67300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.67300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 305.17050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.67300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.67300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.72350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.67300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.67300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 305.17050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.67300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.67300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.72350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 203.44700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 415 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 76 CG CD CE NZ REMARK 480 LYS A 109 CG CD CE NZ REMARK 480 LYS A 133 CG CD CE NZ REMARK 480 LYS A 162 CG CD CE NZ REMARK 480 LYS A 274 CB CG CD CE NZ REMARK 480 LYS A 295 CG CD CE NZ REMARK 480 GLU A 341 CG CD OE1 OE2 REMARK 480 LYS A 342 CG CD CE NZ REMARK 480 LYS A 388 CG CD CE NZ REMARK 480 LYS A 411 CG CD CE NZ REMARK 480 LYS A 414 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -2 0.06 178.05 REMARK 500 PHE A 118 -64.59 -151.30 REMARK 500 TRP A 169 63.77 34.96 REMARK 500 LEU A 175 -53.55 -130.37 REMARK 500 LYS A 229 -119.46 -128.15 REMARK 500 GLN A 278 -90.17 -95.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2053 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1419 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -1 ND1 REMARK 620 2 HIS A 112 NE2 90.2 REMARK 620 3 HOH A2004 O 95.9 173.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1418 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 ASP A 31 OD2 53.5 REMARK 620 3 ASP A 83 OD2 142.5 162.5 REMARK 620 4 ASP A 83 OD1 89.5 141.1 53.0 REMARK 620 5 GLU A 87 OE2 95.4 94.2 91.2 101.7 REMARK 620 6 HOH A2060 O 133.8 80.5 83.7 136.4 82.1 REMARK 620 7 HOH A2061 O 103.3 84.8 83.5 94.0 155.6 73.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P A 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1418 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1419 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1420 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CRYSTAL STRUCTURE DESCRIBES THE MATURE PROTEIN LACKING REMARK 999 THE PERIPLASMIC SIGNAL SEQUENCE. DBREF 4AQ4 A 1 415 UNP P0AG81 UGPB_ECO57 24 438 SEQADV 4AQ4 GLY A -3 UNP P0AG81 EXPRESSION TAG SEQADV 4AQ4 SER A -2 UNP P0AG81 EXPRESSION TAG SEQADV 4AQ4 HIS A -1 UNP P0AG81 EXPRESSION TAG SEQADV 4AQ4 MET A 0 UNP P0AG81 EXPRESSION TAG SEQRES 1 A 419 GLY SER HIS MET VAL THR THR ILE PRO PHE TRP HIS SER SEQRES 2 A 419 MET GLU GLY GLU LEU GLY LYS GLU VAL ASP SER LEU ALA SEQRES 3 A 419 GLN ARG PHE ASN ALA GLU ASN PRO ASP TYR LYS ILE VAL SEQRES 4 A 419 PRO THR TYR LYS GLY ASN TYR GLU GLN ASN LEU SER ALA SEQRES 5 A 419 GLY ILE ALA ALA PHE ARG THR GLY ASN ALA PRO ALA ILE SEQRES 6 A 419 LEU GLN VAL TYR GLU VAL GLY THR ALA THR MET MET ALA SEQRES 7 A 419 SER LYS ALA ILE LYS PRO VAL TYR ASP VAL PHE LYS GLU SEQRES 8 A 419 ALA GLY ILE GLN PHE ASP GLU SER GLN PHE VAL PRO THR SEQRES 9 A 419 VAL SER GLY TYR TYR SER ASP SER LYS THR GLY HIS LEU SEQRES 10 A 419 LEU SER GLN PRO PHE ASN SER SER THR PRO VAL LEU TYR SEQRES 11 A 419 TYR ASN LYS ASP ALA PHE LYS LYS ALA GLY LEU ASP PRO SEQRES 12 A 419 GLU GLN PRO PRO LYS THR TRP GLN ASP LEU ALA ASP TYR SEQRES 13 A 419 ALA ALA LYS LEU LYS ALA SER GLY MET LYS CYS GLY TYR SEQRES 14 A 419 ALA SER GLY TRP GLN GLY TRP ILE GLN LEU GLU ASN PHE SEQRES 15 A 419 SER ALA TRP ASN GLY LEU PRO PHE ALA SER LYS ASN ASN SEQRES 16 A 419 GLY PHE ASP GLY THR ASP ALA VAL LEU GLU PHE ASN LYS SEQRES 17 A 419 PRO GLU GLN VAL LYS HIS ILE ALA MET LEU GLU GLU MET SEQRES 18 A 419 ASN LYS LYS GLY ASP PHE SER TYR VAL GLY ARG LYS ASP SEQRES 19 A 419 GLU SER THR GLU LYS PHE TYR ASN GLY ASP CYS ALA MET SEQRES 20 A 419 THR THR ALA SER SER GLY SER LEU ALA ASN ILE ARG GLU SEQRES 21 A 419 TYR ALA LYS PHE ASN TYR GLY VAL GLY MET MET PRO TYR SEQRES 22 A 419 ASP ALA ASP ALA LYS ASP ALA PRO GLN ASN ALA ILE ILE SEQRES 23 A 419 GLY GLY ALA SER LEU TRP VAL MET GLN GLY LYS ASP LYS SEQRES 24 A 419 GLU THR TYR THR GLY VAL ALA LYS PHE LEU ASP PHE LEU SEQRES 25 A 419 ALA LYS PRO GLU ASN ALA ALA GLU TRP HIS GLN LYS THR SEQRES 26 A 419 GLY TYR LEU PRO ILE THR LYS ALA ALA TYR ASP LEU THR SEQRES 27 A 419 ARG GLU GLN GLY PHE TYR GLU LYS ASN PRO GLY ALA ASP SEQRES 28 A 419 THR ALA THR ARG GLN MET LEU ASN LYS PRO PRO LEU PRO SEQRES 29 A 419 PHE THR LYS GLY LEU ARG LEU GLY ASN MET PRO GLN ILE SEQRES 30 A 419 ARG VAL ILE VAL ASP GLU GLU LEU GLU SER VAL TRP THR SEQRES 31 A 419 GLY LYS LYS THR PRO GLN GLN ALA LEU ASP THR ALA VAL SEQRES 32 A 419 GLU ARG GLY ASN GLN LEU LEU ARG ARG PHE GLU LYS SER SEQRES 33 A 419 THR LYS SER HET G3P A1415 10 HET GOL A1416 6 HET GOL A1417 6 HET CD A1418 1 HET CO A1419 1 HET MG A1420 1 HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM GOL GLYCEROL HETNAM CD CADMIUM ION HETNAM CO COBALT (II) ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 G3P C3 H9 O6 P FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 CD CD 2+ FORMUL 6 CO CO 2+ FORMUL 7 MG MG 2+ FORMUL 8 HOH *335(H2 O) HELIX 1 1 GLY A 12 ASN A 29 1 18 HELIX 2 2 ASN A 41 THR A 55 1 15 HELIX 3 3 GLY A 68 ALA A 74 1 7 HELIX 4 4 PRO A 80 GLY A 89 1 10 HELIX 5 5 ASP A 93 GLN A 96 5 4 HELIX 6 6 VAL A 98 TYR A 105 1 8 HELIX 7 7 LYS A 129 ALA A 135 1 7 HELIX 8 8 THR A 145 SER A 159 1 15 HELIX 9 9 TRP A 169 LEU A 175 1 7 HELIX 10 10 LEU A 175 ASN A 182 1 8 HELIX 11 11 ALA A 187 GLY A 192 1 6 HELIX 12 12 LYS A 204 GLY A 221 1 18 HELIX 13 13 ASP A 230 ASN A 238 1 9 HELIX 14 14 SER A 250 ALA A 258 1 9 HELIX 15 15 ASP A 294 ALA A 309 1 16 HELIX 16 16 LYS A 310 GLY A 322 1 13 HELIX 17 17 THR A 327 GLN A 337 1 11 HELIX 18 18 GLY A 338 ASN A 343 1 6 HELIX 19 19 PRO A 344 ALA A 346 5 3 HELIX 20 20 ASP A 347 LEU A 354 1 8 HELIX 21 21 ASN A 369 THR A 386 1 18 HELIX 22 22 THR A 390 THR A 413 1 24 SHEET 1 AA 5 TYR A 32 TYR A 38 0 SHEET 2 AA 5 THR A 2 HIS A 8 1 O THR A 2 N LYS A 33 SHEET 3 AA 5 ILE A 61 TYR A 65 1 O ILE A 61 N TRP A 7 SHEET 4 AA 5 GLY A 283 MET A 290 -1 O SER A 286 N VAL A 64 SHEET 5 AA 5 GLN A 116 SER A 121 1 O GLN A 116 N LEU A 287 SHEET 1 AB 5 TYR A 32 TYR A 38 0 SHEET 2 AB 5 THR A 2 HIS A 8 1 O THR A 2 N LYS A 33 SHEET 3 AB 5 ILE A 61 TYR A 65 1 O ILE A 61 N TRP A 7 SHEET 4 AB 5 GLY A 283 MET A 290 -1 O SER A 286 N VAL A 64 SHEET 5 AB 5 ILE A 78 LYS A 79 -1 O LYS A 79 N VAL A 289 SHEET 1 AC 2 GLN A 116 SER A 121 0 SHEET 2 AC 2 GLY A 283 MET A 290 1 O GLY A 283 N SER A 121 SHEET 1 AD 4 CYS A 163 SER A 167 0 SHEET 2 AD 4 CYS A 241 SER A 247 1 N ALA A 242 O CYS A 163 SHEET 3 AD 4 PRO A 123 ASN A 128 -1 O VAL A 124 N ALA A 246 SHEET 4 AD 4 TYR A 262 MET A 266 -1 O GLY A 263 N TYR A 127 LINK ND1 HIS A -1 CO CO A1419 1555 1555 2.29 LINK OD1 ASP A 31 CD CD A1418 1555 1555 2.49 LINK OD2 ASP A 31 CD CD A1418 1555 1555 2.45 LINK OD2 ASP A 83 CD CD A1418 5745 1555 2.46 LINK OD1 ASP A 83 CD CD A1418 5745 1555 2.50 LINK OE2 GLU A 87 CD CD A1418 5745 1555 2.47 LINK NE2 HIS A 112 CO CO A1419 5745 1555 2.14 LINK CD CD A1418 O HOH A2060 1555 1555 2.69 LINK CD CD A1418 O HOH A2061 1555 1555 2.56 LINK CO CO A1419 O HOH A2004 1555 1555 2.53 CISPEP 1 ALA A 276 PRO A 277 0 -2.97 SITE 1 AC1 12 TYR A 42 TYR A 65 GLU A 66 SER A 121 SITE 2 AC1 12 TRP A 172 SER A 247 GLY A 283 GLY A 284 SITE 3 AC1 12 TYR A 323 ARG A 374 GOL A1416 HOH A2247 SITE 1 AC2 9 SER A 9 MET A 10 GLU A 11 LEU A 14 SITE 2 AC2 9 TYR A 42 TRP A 169 ASP A 230 G3P A1415 SITE 3 AC2 9 HOH A2072 SITE 1 AC3 5 GLY A 103 LYS A 363 HOH A2140 HOH A2144 SITE 2 AC3 5 HOH A2211 SITE 1 AC4 5 ASP A 31 ASP A 83 GLU A 87 HOH A2060 SITE 2 AC4 5 HOH A2061 SITE 1 AC5 5 SER A -2 HIS A -1 GLY A -3 HIS A 112 SITE 2 AC5 5 HOH A2004 SITE 1 AC6 2 ASN A 369 ARG A 408 CRYST1 49.346 49.346 406.894 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020265 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002458 0.00000