data_4AQX # _entry.id 4AQX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4AQX pdb_00004aqx 10.2210/pdb4aqx/pdb PDBE EBI-52140 ? ? WWPDB D_1290052140 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1AF5 unspecified 'GROUP I MOBILE INTRON ENDONUCLEASE' PDB 1BP7 unspecified 'GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING SITE DEOXYRIBONUCLEIC ACID' PDB 1G9Y unspecified 'HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITHCALCIUM' PDB 1G9Z unspecified 'LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEXWITH MAGNESIUM' PDB 1MOW unspecified E-DREI PDB 1N3E unspecified 'CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE I (PALINDROME OF LEFT SIDE OF WILDTYPE DNA TARGETSEQUENCE)' PDB 1N3F unspecified 'CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE II (PALINDROME OF RIGHT SIDE OF WILDTYPE DNATARGET SEQUENCE)' PDB 1T9I unspecified 'I-CREI(D20N)/DNA COMPLEX' PDB 1T9J unspecified 'I-CREI(Q47E)/DNA COMPLEX' PDB 1U0C unspecified 'Y33C MUTATANT OF HOMING ENDONUCLEASE I-CREI' PDB 1U0D unspecified 'Y33H MUTATANT OF HOMING ENDONUCLEASE I-CREI' PDB 2VBJ unspecified 'MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS' PDB 2VBL unspecified 'MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS' PDB 2VBN unspecified 'MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS' PDB 2VBO unspecified 'MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY ENGINEERED HOMING ENDONUCLEASE HETERODIMERS' PDB 4AAB unspecified ;CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS WILD-TYPE TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') ; PDB 4AAD unspecified ;CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS WILD-TYPE TARGET IN ABSENCE OF METAL IONS AT THE ACTIVE SITE (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') ; PDB 4AAE unspecified ;CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED BY AGCG FROM 5' TO 3') ; PDB 4AAF unspecified ;CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED BY TGCA FROM 5' TO 3') ; PDB 4AAG unspecified ;CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS WILD-TYPE TARGET IN PRESENCE OF CA AT THE ACTIVE SITE (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') ; PDB 4AQU unspecified 'CRYSTAL STRUCTURE OF I-CREI COMPLEXED WITH ITS TARGET METHYLATED AT POSITION PLUS 2 (IN THE B STRAND) IN THE PRESENCE OF CALCIUM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AQX _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-04-19 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valton, J.' 1 'Daboussi, F.' 2 'Leduc, S.' 3 'Redondo, P.' 4 'Macmaster, R.' 5 'Molina, R.' 6 'Montoya, G.' 7 'Duchateau, P.' 8 # _citation.id primary _citation.title ;5'-Cytosine-Phosphoguanine (Cpg) Methylation Impacts the Activity of Natural and Engineered Meganucleases. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 287 _citation.page_first 30139 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22740697 _citation.pdbx_database_id_DOI 10.1074/JBC.M112.379966 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valton, J.' 1 ? primary 'Daboussi, F.' 2 ? primary 'Leduc, S.' 3 ? primary 'Molina, R.' 4 ? primary 'Redondo, P.' 5 ? primary 'Macmaster, R.' 6 ? primary 'Montoya, G.' 7 ? primary 'Duchateau, P.' 8 ? # _cell.entry_id 4AQX _cell.length_a 45.839 _cell.length_b 71.401 _cell.length_c 179.054 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AQX _symmetry.space_group_name_H-M 'P 2 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA ENDONUCLEASE I-CREI' 17516.121 2 3.1.-.- ? 'RESIDUES 2-153' ? 2 polymer syn "5'-D(*TP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP)-3'" 4288.818 1 ? ? ? ? 3 polymer syn "5'-D(*GP*AP*CP*AP*GP*TP*TP*TP*GP*GP)-3'" 3100.040 1 ? ? ? ? 4 polymer syn "5'-D(*CP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*5CM)-3'" 4198.772 1 ? ? ? ? 5 polymer syn "5'-D(*GP*AP*CP*GP*TP*TP*TP*TP*GP*AP)-3'" 3075.026 1 ? ? ? ? 6 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 7 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 8 water nat water 18.015 133 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'I-CREI, 23S RRNA INTRON PROTEIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEI KPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD ; ;NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEI KPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD ; A,B ? 2 polydeoxyribonucleotide no no '(DT)(DC)(DA)(DA)(DA)(DA)(DC)(DG)(DT)(DC)(DG)(DT)(DG)(DA)' TCAAAACGTCGTGA C ? 3 polydeoxyribonucleotide no no '(DG)(DA)(DC)(DA)(DG)(DT)(DT)(DT)(DG)(DG)' GACAGTTTGG D ? 4 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DA)(DA)(DC)(DT)(DG)(DT)(DC)(DT)(DC)(DA)(5CM)' CCAAACTGTCTCAC E ? 5 polydeoxyribonucleotide no no '(DG)(DA)(DC)(DG)(DT)(DT)(DT)(DT)(DG)(DA)' GACGTTTTGA F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 THR n 1 3 LYS n 1 4 TYR n 1 5 ASN n 1 6 LYS n 1 7 GLU n 1 8 PHE n 1 9 LEU n 1 10 LEU n 1 11 TYR n 1 12 LEU n 1 13 ALA n 1 14 GLY n 1 15 PHE n 1 16 VAL n 1 17 ASP n 1 18 GLY n 1 19 ASP n 1 20 GLY n 1 21 SER n 1 22 ILE n 1 23 ILE n 1 24 ALA n 1 25 GLN n 1 26 ILE n 1 27 LYS n 1 28 PRO n 1 29 ASN n 1 30 GLN n 1 31 SER n 1 32 TYR n 1 33 LYS n 1 34 PHE n 1 35 LYS n 1 36 HIS n 1 37 GLN n 1 38 LEU n 1 39 SER n 1 40 LEU n 1 41 THR n 1 42 PHE n 1 43 GLN n 1 44 VAL n 1 45 THR n 1 46 GLN n 1 47 LYS n 1 48 THR n 1 49 GLN n 1 50 ARG n 1 51 ARG n 1 52 TRP n 1 53 PHE n 1 54 LEU n 1 55 ASP n 1 56 LYS n 1 57 LEU n 1 58 VAL n 1 59 ASP n 1 60 GLU n 1 61 ILE n 1 62 GLY n 1 63 VAL n 1 64 GLY n 1 65 TYR n 1 66 VAL n 1 67 ARG n 1 68 ASP n 1 69 ARG n 1 70 GLY n 1 71 SER n 1 72 VAL n 1 73 SER n 1 74 ASP n 1 75 TYR n 1 76 ILE n 1 77 LEU n 1 78 SER n 1 79 GLU n 1 80 ILE n 1 81 LYS n 1 82 PRO n 1 83 LEU n 1 84 HIS n 1 85 ASN n 1 86 PHE n 1 87 LEU n 1 88 THR n 1 89 GLN n 1 90 LEU n 1 91 GLN n 1 92 PRO n 1 93 PHE n 1 94 LEU n 1 95 LYS n 1 96 LEU n 1 97 LYS n 1 98 GLN n 1 99 LYS n 1 100 GLN n 1 101 ALA n 1 102 ASN n 1 103 LEU n 1 104 VAL n 1 105 LEU n 1 106 LYS n 1 107 ILE n 1 108 ILE n 1 109 GLU n 1 110 GLN n 1 111 LEU n 1 112 PRO n 1 113 SER n 1 114 ALA n 1 115 LYS n 1 116 GLU n 1 117 SER n 1 118 PRO n 1 119 ASP n 1 120 LYS n 1 121 PHE n 1 122 LEU n 1 123 GLU n 1 124 VAL n 1 125 CYS n 1 126 THR n 1 127 TRP n 1 128 VAL n 1 129 ASP n 1 130 GLN n 1 131 ILE n 1 132 ALA n 1 133 ALA n 1 134 LEU n 1 135 ASN n 1 136 ASP n 1 137 SER n 1 138 LYS n 1 139 THR n 1 140 ARG n 1 141 LYS n 1 142 THR n 1 143 THR n 1 144 SER n 1 145 GLU n 1 146 THR n 1 147 VAL n 1 148 ARG n 1 149 ALA n 1 150 VAL n 1 151 LEU n 1 152 ASP n 2 1 DT n 2 2 DC n 2 3 DA n 2 4 DA n 2 5 DA n 2 6 DA n 2 7 DC n 2 8 DG n 2 9 DT n 2 10 DC n 2 11 DG n 2 12 DT n 2 13 DG n 2 14 DA n 3 1 DG n 3 2 DA n 3 3 DC n 3 4 DA n 3 5 DG n 3 6 DT n 3 7 DT n 3 8 DT n 3 9 DG n 3 10 DG n 4 1 DC n 4 2 DC n 4 3 DA n 4 4 DA n 4 5 DA n 4 6 DC n 4 7 DT n 4 8 DG n 4 9 DT n 4 10 DC n 4 11 DT n 4 12 DC n 4 13 DA n 4 14 5CM n 5 1 DG n 5 2 DA n 5 3 DC n 5 4 DG n 5 5 DT n 5 6 DT n 5 7 DT n 5 8 DT n 5 9 DG n 5 10 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CHLAMYDOMONAS REINHARDTII' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3055 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector CDFDUET1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? 3 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? 4 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? 5 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP DNE1_CHLRE 1 ? ? P05725 ? 2 PDB 4AQX 2 ? ? 4AQX ? 3 PDB 4AQX 3 ? ? 4AQX ? 4 PDB 4AQX 4 ? ? 4AQX ? 5 PDB 4AQX 5 ? ? 4AQX ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4AQX A 1 ? 152 ? P05725 2 ? 153 ? 2 153 2 1 4AQX B 1 ? 152 ? P05725 2 ? 153 ? 2 153 3 2 4AQX C 1 ? 14 ? 4AQX 501 ? 514 ? 501 514 4 3 4AQX D 1 ? 10 ? 4AQX 515 ? 524 ? 515 524 5 4 4AQX E 1 ? 14 ? 4AQX 601 ? 614 ? 601 614 6 5 4AQX F 1 ? 10 ? 4AQX 615 ? 624 ? 615 624 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4AQX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_percent_sol 58.28 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.0 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AQX _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.79 _reflns.d_resolution_high 2.20 _reflns.number_obs 30701 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.12 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.10 _reflns.B_iso_Wilson_estimate 50.02 _reflns.pdbx_redundancy 4.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.38 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 4.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AQX _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 30701 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.793 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 99.79 _refine.ls_R_factor_obs 0.2041 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2015 _refine.ls_R_factor_R_free 0.2418 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.5 _refine.ls_number_reflns_R_free 1998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 12.1210 _refine.aniso_B[2][2] -8.6003 _refine.aniso_B[3][3] -3.5207 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.357 _refine.solvent_model_param_bsol 49.936 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.95 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1G9Z' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.80 _refine.pdbx_overall_phase_error 25.08 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2472 _refine_hist.pdbx_number_atoms_nucleic_acid 981 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 133 _refine_hist.number_atoms_total 3619 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 45.793 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 3656 'X-RAY DIFFRACTION' ? f_angle_d 1.279 ? ? 5152 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 23.120 ? ? 1423 'X-RAY DIFFRACTION' ? f_chiral_restr 0.078 ? ? 578 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 476 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.2000 2.2550 2002 0.3271 100.00 0.3968 . . 139 . . 'X-RAY DIFFRACTION' . 2.2550 2.3160 2015 0.2964 100.00 0.3361 . . 140 . . 'X-RAY DIFFRACTION' . 2.3160 2.3841 2022 0.3207 100.00 0.3784 . . 141 . . 'X-RAY DIFFRACTION' . 2.3841 2.4611 2003 0.3079 100.00 0.4017 . . 139 . . 'X-RAY DIFFRACTION' . 2.4611 2.5491 2041 0.2926 100.00 0.3569 . . 143 . . 'X-RAY DIFFRACTION' . 2.5491 2.6511 2010 0.2475 100.00 0.3282 . . 140 . . 'X-RAY DIFFRACTION' . 2.6511 2.7717 2018 0.2520 100.00 0.2992 . . 140 . . 'X-RAY DIFFRACTION' . 2.7717 2.9179 2034 0.2508 100.00 0.2763 . . 142 . . 'X-RAY DIFFRACTION' . 2.9179 3.1006 2045 0.2352 100.00 0.2912 . . 143 . . 'X-RAY DIFFRACTION' . 3.1006 3.3400 2046 0.1968 100.00 0.2331 . . 141 . . 'X-RAY DIFFRACTION' . 3.3400 3.6759 2043 0.1966 100.00 0.2471 . . 143 . . 'X-RAY DIFFRACTION' . 3.6759 4.2075 2098 0.1687 100.00 0.1831 . . 145 . . 'X-RAY DIFFRACTION' . 4.2075 5.2998 2101 0.1376 100.00 0.1667 . . 147 . . 'X-RAY DIFFRACTION' . 5.2998 45.8029 2225 0.1903 100.00 0.2267 . . 155 . . # _struct.entry_id 4AQX _struct.title 'Crystal structure of I-CreI complexed with its target methylated at position plus 2 (in the b strand) in the presence of magnesium' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AQX _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, METHYLATION, GENE TARGETING, GENETICS, PROTEIN-DNA INTERACTION, HOMING ENDONUCLEASES' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 6 ? H N N 6 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? M N N 7 ? N N N 7 ? O N N 8 ? P N N 8 ? Q N N 8 ? R N N 8 ? S N N 8 ? T N N 8 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 5 ? ASP A 19 ? ASN A 6 ASP A 20 1 ? 15 HELX_P HELX_P2 2 ARG A 50 ? GLY A 62 ? ARG A 51 GLY A 63 1 ? 13 HELX_P HELX_P3 3 GLU A 79 ? GLN A 91 ? GLU A 80 GLN A 92 1 ? 13 HELX_P HELX_P4 4 PRO A 92 ? LEU A 94 ? PRO A 93 LEU A 95 5 ? 3 HELX_P HELX_P5 5 LYS A 97 ? LYS A 115 ? LYS A 98 LYS A 116 1 ? 19 HELX_P HELX_P6 6 SER A 117 ? ASN A 135 ? SER A 118 ASN A 136 1 ? 19 HELX_P HELX_P7 7 THR A 143 ? ASP A 152 ? THR A 144 ASP A 153 1 ? 10 HELX_P HELX_P8 8 ASN B 5 ? ASP B 19 ? ASN B 6 ASP B 20 1 ? 15 HELX_P HELX_P9 9 ARG B 50 ? GLY B 62 ? ARG B 51 GLY B 63 1 ? 13 HELX_P HELX_P10 10 GLU B 79 ? GLN B 91 ? GLU B 80 GLN B 92 1 ? 13 HELX_P HELX_P11 11 PRO B 92 ? LEU B 94 ? PRO B 93 LEU B 95 5 ? 3 HELX_P HELX_P12 12 LYS B 97 ? ASN B 135 ? LYS B 98 ASN B 136 1 ? 39 HELX_P HELX_P13 13 THR B 143 ? LEU B 151 ? THR B 144 LEU B 152 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? E DA 13 "O3'" ? ? ? 1_555 E 5CM 14 P ? ? E DA 613 E 5CM 614 1_555 ? ? ? ? ? ? ? 1.609 ? ? metalc1 metalc ? ? A GLY 18 O ? ? ? 1_555 M MG . MG ? ? A GLY 19 D MG 1526 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc2 metalc ? ? A ASP 19 OD1 ? ? ? 1_555 L MG . MG ? ? A ASP 20 D MG 1525 1_555 ? ? ? ? ? ? ? 2.156 ? ? metalc3 metalc ? ? A ASP 19 OD2 ? ? ? 1_555 N MG . MG ? ? A ASP 20 F MG 1625 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc4 metalc ? ? O HOH . O ? ? ? 1_555 M MG . MG ? ? A HOH 2004 D MG 1526 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc5 metalc ? ? O HOH . O ? ? ? 1_555 N MG . MG ? ? A HOH 2006 F MG 1625 1_555 ? ? ? ? ? ? ? 2.137 ? ? metalc6 metalc ? ? B GLY 18 O ? ? ? 1_555 N MG . MG ? ? B GLY 19 F MG 1625 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc7 metalc ? ? B ASP 19 OD1 ? ? ? 1_555 L MG . MG ? ? B ASP 20 D MG 1525 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc8 metalc ? ? B ASP 19 OD2 ? ? ? 1_555 M MG . MG ? ? B ASP 20 D MG 1526 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc9 metalc ? ? C DA 14 "O3'" ? ? ? 1_555 L MG . MG ? ? C DA 514 D MG 1525 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc10 metalc ? ? C DA 14 OP1 ? ? ? 1_555 N MG . MG ? ? C DA 514 F MG 1625 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc11 metalc ? ? D DG 1 OP2 ? ? ? 1_555 L MG . MG ? ? D DG 515 D MG 1525 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc12 metalc ? ? D DG 1 OP3 ? ? ? 1_555 M MG . MG ? ? D DG 515 D MG 1526 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc13 metalc ? ? D DG 1 OP2 ? ? ? 1_555 M MG . MG ? ? D DG 515 D MG 1526 1_555 ? ? ? ? ? ? ? 2.084 ? ? metalc14 metalc ? ? L MG . MG ? ? ? 1_555 E 5CM 14 "O3'" ? ? D MG 1525 E 5CM 614 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc15 metalc ? ? L MG . MG ? ? ? 1_555 F DG 1 OP1 ? ? D MG 1525 F DG 615 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc16 metalc ? ? M MG . MG ? ? ? 1_555 E 5CM 14 OP1 ? ? D MG 1526 E 5CM 614 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc17 metalc ? ? F DG 1 OP1 ? ? ? 1_555 N MG . MG ? ? F DG 615 F MG 1625 1_555 ? ? ? ? ? ? ? 2.186 ? ? metalc18 metalc ? ? F DG 1 OP2 ? ? ? 1_555 N MG . MG ? ? F DG 615 F MG 1625 1_555 ? ? ? ? ? ? ? 2.206 ? ? hydrog1 hydrog ? ? C DT 1 N3 ? ? ? 1_555 F DA 10 N1 ? ? C DT 501 F DA 624 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C DT 1 O4 ? ? ? 1_555 F DA 10 N6 ? ? C DT 501 F DA 624 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C DC 2 N3 ? ? ? 1_555 F DG 9 N1 ? ? C DC 502 F DG 623 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C DC 2 N4 ? ? ? 1_555 F DG 9 O6 ? ? C DC 502 F DG 623 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C DC 2 O2 ? ? ? 1_555 F DG 9 N2 ? ? C DC 502 F DG 623 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C DA 3 N1 ? ? ? 1_555 F DT 8 N3 ? ? C DA 503 F DT 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C DA 3 N6 ? ? ? 1_555 F DT 8 O4 ? ? C DA 503 F DT 622 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C DA 4 N1 ? ? ? 1_555 F DT 7 N3 ? ? C DA 504 F DT 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C DA 4 N6 ? ? ? 1_555 F DT 7 O4 ? ? C DA 504 F DT 621 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C DA 5 N1 ? ? ? 1_555 F DT 6 N3 ? ? C DA 505 F DT 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C DA 5 N6 ? ? ? 1_555 F DT 6 O4 ? ? C DA 505 F DT 620 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C DA 6 N1 ? ? ? 1_555 F DT 5 N3 ? ? C DA 506 F DT 619 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C DA 6 N6 ? ? ? 1_555 F DT 5 O4 ? ? C DA 506 F DT 619 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C DC 7 N3 ? ? ? 1_555 F DG 4 N1 ? ? C DC 507 F DG 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C DC 7 N4 ? ? ? 1_555 F DG 4 O6 ? ? C DC 507 F DG 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C DC 7 O2 ? ? ? 1_555 F DG 4 N2 ? ? C DC 507 F DG 618 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C DG 8 N1 ? ? ? 1_555 F DC 3 N3 ? ? C DG 508 F DC 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C DG 8 N2 ? ? ? 1_555 F DC 3 O2 ? ? C DG 508 F DC 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C DG 8 O6 ? ? ? 1_555 F DC 3 N4 ? ? C DG 508 F DC 617 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DT 9 N3 ? ? ? 1_555 F DA 2 N1 ? ? C DT 509 F DA 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DT 9 O4 ? ? ? 1_555 F DA 2 N6 ? ? C DT 509 F DA 616 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 10 N3 ? ? ? 1_555 F DG 1 N1 ? ? C DC 510 F DG 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 10 N4 ? ? ? 1_555 F DG 1 O6 ? ? C DC 510 F DG 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 10 O2 ? ? ? 1_555 F DG 1 N2 ? ? C DC 510 F DG 615 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 11 N1 ? ? ? 1_555 E 5CM 14 N3 ? ? C DG 511 E 5CM 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 11 N2 ? ? ? 1_555 E 5CM 14 O2 ? ? C DG 511 E 5CM 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 11 O6 ? ? ? 1_555 E 5CM 14 N4 ? ? C DG 511 E 5CM 614 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DT 12 N3 ? ? ? 1_555 E DA 13 N1 ? ? C DT 512 E DA 613 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DT 12 O4 ? ? ? 1_555 E DA 13 N6 ? ? C DT 512 E DA 613 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 13 N1 ? ? ? 1_555 E DC 12 N3 ? ? C DG 513 E DC 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 13 N2 ? ? ? 1_555 E DC 12 O2 ? ? C DG 513 E DC 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DG 13 O6 ? ? ? 1_555 E DC 12 N4 ? ? C DG 513 E DC 612 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 14 N1 ? ? ? 1_555 E DT 11 N3 ? ? C DA 514 E DT 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DA 14 N6 ? ? ? 1_555 E DT 11 O4 ? ? C DA 514 E DT 611 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D DG 1 N1 ? ? ? 1_555 E DC 10 N3 ? ? D DG 515 E DC 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? D DG 1 N2 ? ? ? 1_555 E DC 10 O2 ? ? D DG 515 E DC 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? D DG 1 O6 ? ? ? 1_555 E DC 10 N4 ? ? D DG 515 E DC 610 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? D DA 2 N1 ? ? ? 1_555 E DT 9 N3 ? ? D DA 516 E DT 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? D DA 2 N6 ? ? ? 1_555 E DT 9 O4 ? ? D DA 516 E DT 609 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? D DC 3 N3 ? ? ? 1_555 E DG 8 N1 ? ? D DC 517 E DG 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? D DC 3 N4 ? ? ? 1_555 E DG 8 O6 ? ? D DC 517 E DG 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D DC 3 O2 ? ? ? 1_555 E DG 8 N2 ? ? D DC 517 E DG 608 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D DA 4 N1 ? ? ? 1_555 E DT 7 N3 ? ? D DA 518 E DT 607 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D DA 4 N6 ? ? ? 1_555 E DT 7 O4 ? ? D DA 518 E DT 607 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? D DG 5 N1 ? ? ? 1_555 E DC 6 N3 ? ? D DG 519 E DC 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? D DG 5 N2 ? ? ? 1_555 E DC 6 O2 ? ? D DG 519 E DC 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? D DG 5 O6 ? ? ? 1_555 E DC 6 N4 ? ? D DG 519 E DC 606 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? D DT 6 N3 ? ? ? 1_555 E DA 5 N1 ? ? D DT 520 E DA 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? D DT 6 O4 ? ? ? 1_555 E DA 5 N6 ? ? D DT 520 E DA 605 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D DT 7 N3 ? ? ? 1_555 E DA 4 N1 ? ? D DT 521 E DA 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D DT 7 O4 ? ? ? 1_555 E DA 4 N6 ? ? D DT 521 E DA 604 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? D DT 8 N3 ? ? ? 1_555 E DA 3 N1 ? ? D DT 522 E DA 603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D DT 8 O4 ? ? ? 1_555 E DA 3 N6 ? ? D DT 522 E DA 603 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D DG 9 N1 ? ? ? 1_555 E DC 2 N3 ? ? D DG 523 E DC 602 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D DG 9 N2 ? ? ? 1_555 E DC 2 O2 ? ? D DG 523 E DC 602 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D DG 9 O6 ? ? ? 1_555 E DC 2 N4 ? ? D DG 523 E DC 602 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D DG 10 N1 ? ? ? 1_555 E DC 1 N3 ? ? D DG 524 E DC 601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D DG 10 N2 ? ? ? 1_555 E DC 1 O2 ? ? D DG 524 E DC 601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? D DG 10 O6 ? ? ? 1_555 E DC 1 N4 ? ? D DG 524 E DC 601 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? BA ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel BA 1 2 ? anti-parallel BA 2 3 ? anti-parallel BA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 20 ? PRO A 28 ? GLY A 21 PRO A 29 AA 2 HIS A 36 ? LYS A 47 ? HIS A 37 LYS A 48 AA 3 VAL A 72 ? LEU A 77 ? VAL A 73 LEU A 78 AA 4 TYR A 65 ? ARG A 69 ? TYR A 66 ARG A 70 BA 1 GLY B 20 ? PRO B 28 ? GLY B 21 PRO B 29 BA 2 HIS B 36 ? LYS B 47 ? HIS B 37 LYS B 48 BA 3 VAL B 72 ? LEU B 77 ? VAL B 73 LEU B 78 BA 4 TYR B 65 ? ARG B 69 ? TYR B 66 ARG B 70 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LYS A 27 ? N LYS A 28 O GLN A 37 ? O GLN A 38 AA 2 3 N GLN A 46 ? N GLN A 47 O SER A 73 ? O SER A 74 AA 3 4 N ILE A 76 ? N ILE A 77 O TYR A 65 ? O TYR A 66 BA 1 2 N LYS B 27 ? N LYS B 28 O GLN B 37 ? O GLN B 38 BA 2 3 N GLN B 46 ? N GLN B 47 O SER B 73 ? O SER B 74 BA 3 4 N ILE B 76 ? N ILE B 77 O TYR B 65 ? O TYR B 66 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 1154 ? 5 'BINDING SITE FOR RESIDUE GOL A 1154' AC2 Software A GOL 1155 ? 9 'BINDING SITE FOR RESIDUE GOL A 1155' AC3 Software B GOL 1354 ? 4 'BINDING SITE FOR RESIDUE GOL B 1354' AC4 Software B GOL 1355 ? 11 'BINDING SITE FOR RESIDUE GOL B 1355' AC5 Software C GOL 1515 ? 9 'BINDING SITE FOR RESIDUE GOL C 1515' AC6 Software D MG 1525 ? 6 'BINDING SITE FOR RESIDUE MG D 1525' AC7 Software F MG 1625 ? 5 'BINDING SITE FOR RESIDUE MG F 1625' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 PHE A 53 ? PHE A 54 . ? 1_555 ? 2 AC1 5 LYS A 56 ? LYS A 57 . ? 1_555 ? 3 AC1 5 LEU A 57 ? LEU A 58 . ? 1_555 ? 4 AC1 5 GLU A 60 ? GLU A 61 . ? 1_555 ? 5 AC1 5 LYS B 95 ? LYS B 96 . ? 1_555 ? 6 AC2 9 ALA A 24 ? ALA A 25 . ? 1_555 ? 7 AC2 9 GLN A 25 ? GLN A 26 . ? 1_555 ? 8 AC2 9 ILE A 26 ? ILE A 27 . ? 1_555 ? 9 AC2 9 VAL A 128 ? VAL A 129 . ? 1_555 ? 10 AC2 9 ARG A 140 ? ARG A 141 . ? 1_555 ? 11 AC2 9 THR A 142 ? THR A 143 . ? 1_555 ? 12 AC2 9 HOH O . ? HOH A 2012 . ? 1_555 ? 13 AC2 9 DC D 3 ? DC D 517 . ? 1_555 ? 14 AC2 9 DA D 4 ? DA D 518 . ? 1_555 ? 15 AC3 4 TYR B 4 ? TYR B 5 . ? 1_555 ? 16 AC3 4 ASN B 5 ? ASN B 6 . ? 1_555 ? 17 AC3 4 PHE B 8 ? PHE B 9 . ? 1_555 ? 18 AC3 4 GLU B 60 ? GLU B 61 . ? 1_555 ? 19 AC4 11 ARG A 50 ? ARG A 51 . ? 1_555 ? 20 AC4 11 LEU B 96 ? LEU B 97 . ? 1_555 ? 21 AC4 11 LYS B 97 ? LYS B 98 . ? 1_555 ? 22 AC4 11 GLN B 100 ? GLN B 101 . ? 1_555 ? 23 AC4 11 LEU B 134 ? LEU B 135 . ? 1_555 ? 24 AC4 11 ASN B 135 ? ASN B 136 . ? 1_555 ? 25 AC4 11 ASP B 136 ? ASP B 137 . ? 1_555 ? 26 AC4 11 HOH P . ? HOH B 2030 . ? 1_555 ? 27 AC4 11 HOH P . ? HOH B 2031 . ? 1_555 ? 28 AC4 11 HOH P . ? HOH B 2038 . ? 1_555 ? 29 AC4 11 DA F 2 ? DA F 616 . ? 1_555 ? 30 AC5 9 GLN B 37 ? GLN B 38 . ? 1_555 ? 31 AC5 9 SER B 39 ? SER B 40 . ? 1_555 ? 32 AC5 9 SER B 78 ? SER B 79 . ? 1_555 ? 33 AC5 9 ILE B 80 ? ILE B 81 . ? 1_555 ? 34 AC5 9 HOH P . ? HOH B 2011 . ? 1_555 ? 35 AC5 9 HOH P . ? HOH B 2014 . ? 1_555 ? 36 AC5 9 HOH P . ? HOH B 2016 . ? 1_555 ? 37 AC5 9 DA C 3 ? DA C 503 . ? 1_555 ? 38 AC5 9 DA C 4 ? DA C 504 . ? 1_555 ? 39 AC6 6 ASP A 19 ? ASP A 20 . ? 1_555 ? 40 AC6 6 ASP B 19 ? ASP B 20 . ? 1_555 ? 41 AC6 6 DA C 14 ? DA C 514 . ? 1_555 ? 42 AC6 6 DG D 1 ? DG D 515 . ? 1_555 ? 43 AC6 6 5CM E 14 ? 5CM E 614 . ? 1_555 ? 44 AC6 6 DG F 1 ? DG F 615 . ? 1_555 ? 45 AC7 5 ASP A 19 ? ASP A 20 . ? 1_555 ? 46 AC7 5 HOH O . ? HOH A 2006 . ? 1_555 ? 47 AC7 5 GLY B 18 ? GLY B 19 . ? 1_555 ? 48 AC7 5 DA C 14 ? DA C 514 . ? 1_555 ? 49 AC7 5 DG F 1 ? DG F 615 . ? 1_555 ? # _database_PDB_matrix.entry_id 4AQX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AQX _atom_sites.fract_transf_matrix[1][1] 0.021815 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014005 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005585 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 2 2 ASN ASN A . n A 1 2 THR 2 3 3 THR THR A . n A 1 3 LYS 3 4 4 LYS LYS A . n A 1 4 TYR 4 5 5 TYR TYR A . n A 1 5 ASN 5 6 6 ASN ASN A . n A 1 6 LYS 6 7 7 LYS LYS A . n A 1 7 GLU 7 8 8 GLU GLU A . n A 1 8 PHE 8 9 9 PHE PHE A . n A 1 9 LEU 9 10 10 LEU LEU A . n A 1 10 LEU 10 11 11 LEU LEU A . n A 1 11 TYR 11 12 12 TYR TYR A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 ALA 13 14 14 ALA ALA A . n A 1 14 GLY 14 15 15 GLY GLY A . n A 1 15 PHE 15 16 16 PHE PHE A . n A 1 16 VAL 16 17 17 VAL VAL A . n A 1 17 ASP 17 18 18 ASP ASP A . n A 1 18 GLY 18 19 19 GLY GLY A . n A 1 19 ASP 19 20 20 ASP ASP A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 SER 21 22 22 SER SER A . n A 1 22 ILE 22 23 23 ILE ILE A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 ALA 24 25 25 ALA ALA A . n A 1 25 GLN 25 26 26 GLN GLN A . n A 1 26 ILE 26 27 27 ILE ILE A . n A 1 27 LYS 27 28 28 LYS LYS A . n A 1 28 PRO 28 29 29 PRO PRO A . n A 1 29 ASN 29 30 30 ASN ASN A . n A 1 30 GLN 30 31 31 GLN GLN A . n A 1 31 SER 31 32 32 SER SER A . n A 1 32 TYR 32 33 33 TYR TYR A . n A 1 33 LYS 33 34 34 LYS LYS A . n A 1 34 PHE 34 35 35 PHE PHE A . n A 1 35 LYS 35 36 36 LYS LYS A . n A 1 36 HIS 36 37 37 HIS HIS A . n A 1 37 GLN 37 38 38 GLN GLN A . n A 1 38 LEU 38 39 39 LEU LEU A . n A 1 39 SER 39 40 40 SER SER A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 THR 41 42 42 THR THR A . n A 1 42 PHE 42 43 43 PHE PHE A . n A 1 43 GLN 43 44 44 GLN GLN A . n A 1 44 VAL 44 45 45 VAL VAL A . n A 1 45 THR 45 46 46 THR THR A . n A 1 46 GLN 46 47 47 GLN GLN A . n A 1 47 LYS 47 48 48 LYS LYS A . n A 1 48 THR 48 49 49 THR THR A . n A 1 49 GLN 49 50 50 GLN GLN A . n A 1 50 ARG 50 51 51 ARG ARG A . n A 1 51 ARG 51 52 52 ARG ARG A . n A 1 52 TRP 52 53 53 TRP TRP A . n A 1 53 PHE 53 54 54 PHE PHE A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 ASP 55 56 56 ASP ASP A . n A 1 56 LYS 56 57 57 LYS LYS A . n A 1 57 LEU 57 58 58 LEU LEU A . n A 1 58 VAL 58 59 59 VAL VAL A . n A 1 59 ASP 59 60 60 ASP ASP A . n A 1 60 GLU 60 61 61 GLU GLU A . n A 1 61 ILE 61 62 62 ILE ILE A . n A 1 62 GLY 62 63 63 GLY GLY A . n A 1 63 VAL 63 64 64 VAL VAL A . n A 1 64 GLY 64 65 65 GLY GLY A . n A 1 65 TYR 65 66 66 TYR TYR A . n A 1 66 VAL 66 67 67 VAL VAL A . n A 1 67 ARG 67 68 68 ARG ARG A . n A 1 68 ASP 68 69 69 ASP ASP A . n A 1 69 ARG 69 70 70 ARG ARG A . n A 1 70 GLY 70 71 71 GLY GLY A . n A 1 71 SER 71 72 72 SER SER A . n A 1 72 VAL 72 73 73 VAL VAL A . n A 1 73 SER 73 74 74 SER SER A . n A 1 74 ASP 74 75 75 ASP ASP A . n A 1 75 TYR 75 76 76 TYR TYR A . n A 1 76 ILE 76 77 77 ILE ILE A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 SER 78 79 79 SER SER A . n A 1 79 GLU 79 80 80 GLU GLU A . n A 1 80 ILE 80 81 81 ILE ILE A . n A 1 81 LYS 81 82 82 LYS LYS A . n A 1 82 PRO 82 83 83 PRO PRO A . n A 1 83 LEU 83 84 84 LEU LEU A . n A 1 84 HIS 84 85 85 HIS HIS A . n A 1 85 ASN 85 86 86 ASN ASN A . n A 1 86 PHE 86 87 87 PHE PHE A . n A 1 87 LEU 87 88 88 LEU LEU A . n A 1 88 THR 88 89 89 THR THR A . n A 1 89 GLN 89 90 90 GLN GLN A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 GLN 91 92 92 GLN GLN A . n A 1 92 PRO 92 93 93 PRO PRO A . n A 1 93 PHE 93 94 94 PHE PHE A . n A 1 94 LEU 94 95 95 LEU LEU A . n A 1 95 LYS 95 96 96 LYS LYS A . n A 1 96 LEU 96 97 97 LEU LEU A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 GLN 98 99 99 GLN GLN A . n A 1 99 LYS 99 100 100 LYS LYS A . n A 1 100 GLN 100 101 101 GLN GLN A . n A 1 101 ALA 101 102 102 ALA ALA A . n A 1 102 ASN 102 103 103 ASN ASN A . n A 1 103 LEU 103 104 104 LEU LEU A . n A 1 104 VAL 104 105 105 VAL VAL A . n A 1 105 LEU 105 106 106 LEU LEU A . n A 1 106 LYS 106 107 107 LYS LYS A . n A 1 107 ILE 107 108 108 ILE ILE A . n A 1 108 ILE 108 109 109 ILE ILE A . n A 1 109 GLU 109 110 110 GLU GLU A . n A 1 110 GLN 110 111 111 GLN GLN A . n A 1 111 LEU 111 112 112 LEU LEU A . n A 1 112 PRO 112 113 113 PRO PRO A . n A 1 113 SER 113 114 114 SER SER A . n A 1 114 ALA 114 115 115 ALA ALA A . n A 1 115 LYS 115 116 116 LYS LYS A . n A 1 116 GLU 116 117 117 GLU GLU A . n A 1 117 SER 117 118 118 SER SER A . n A 1 118 PRO 118 119 119 PRO PRO A . n A 1 119 ASP 119 120 120 ASP ASP A . n A 1 120 LYS 120 121 121 LYS LYS A . n A 1 121 PHE 121 122 122 PHE PHE A . n A 1 122 LEU 122 123 123 LEU LEU A . n A 1 123 GLU 123 124 124 GLU GLU A . n A 1 124 VAL 124 125 125 VAL VAL A . n A 1 125 CYS 125 126 126 CYS CYS A . n A 1 126 THR 126 127 127 THR THR A . n A 1 127 TRP 127 128 128 TRP TRP A . n A 1 128 VAL 128 129 129 VAL VAL A . n A 1 129 ASP 129 130 130 ASP ASP A . n A 1 130 GLN 130 131 131 GLN GLN A . n A 1 131 ILE 131 132 132 ILE ILE A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 ALA 133 134 134 ALA ALA A . n A 1 134 LEU 134 135 135 LEU LEU A . n A 1 135 ASN 135 136 136 ASN ASN A . n A 1 136 ASP 136 137 137 ASP ASP A . n A 1 137 SER 137 138 138 SER SER A . n A 1 138 LYS 138 139 139 LYS LYS A . n A 1 139 THR 139 140 140 THR THR A . n A 1 140 ARG 140 141 141 ARG ARG A . n A 1 141 LYS 141 142 142 LYS LYS A . n A 1 142 THR 142 143 143 THR THR A . n A 1 143 THR 143 144 144 THR THR A . n A 1 144 SER 144 145 145 SER SER A . n A 1 145 GLU 145 146 146 GLU GLU A . n A 1 146 THR 146 147 147 THR THR A . n A 1 147 VAL 147 148 148 VAL VAL A . n A 1 148 ARG 148 149 149 ARG ARG A . n A 1 149 ALA 149 150 150 ALA ALA A . n A 1 150 VAL 150 151 151 VAL VAL A . n A 1 151 LEU 151 152 152 LEU LEU A . n A 1 152 ASP 152 153 153 ASP ASP A . n B 1 1 ASN 1 2 2 ASN ASN B . n B 1 2 THR 2 3 3 THR THR B . n B 1 3 LYS 3 4 4 LYS LYS B . n B 1 4 TYR 4 5 5 TYR TYR B . n B 1 5 ASN 5 6 6 ASN ASN B . n B 1 6 LYS 6 7 7 LYS LYS B . n B 1 7 GLU 7 8 8 GLU GLU B . n B 1 8 PHE 8 9 9 PHE PHE B . n B 1 9 LEU 9 10 10 LEU LEU B . n B 1 10 LEU 10 11 11 LEU LEU B . n B 1 11 TYR 11 12 12 TYR TYR B . n B 1 12 LEU 12 13 13 LEU LEU B . n B 1 13 ALA 13 14 14 ALA ALA B . n B 1 14 GLY 14 15 15 GLY GLY B . n B 1 15 PHE 15 16 16 PHE PHE B . n B 1 16 VAL 16 17 17 VAL VAL B . n B 1 17 ASP 17 18 18 ASP ASP B . n B 1 18 GLY 18 19 19 GLY GLY B . n B 1 19 ASP 19 20 20 ASP ASP B . n B 1 20 GLY 20 21 21 GLY GLY B . n B 1 21 SER 21 22 22 SER SER B . n B 1 22 ILE 22 23 23 ILE ILE B . n B 1 23 ILE 23 24 24 ILE ILE B . n B 1 24 ALA 24 25 25 ALA ALA B . n B 1 25 GLN 25 26 26 GLN GLN B . n B 1 26 ILE 26 27 27 ILE ILE B . n B 1 27 LYS 27 28 28 LYS LYS B . n B 1 28 PRO 28 29 29 PRO PRO B . n B 1 29 ASN 29 30 30 ASN ASN B . n B 1 30 GLN 30 31 31 GLN GLN B . n B 1 31 SER 31 32 32 SER SER B . n B 1 32 TYR 32 33 33 TYR TYR B . n B 1 33 LYS 33 34 34 LYS LYS B . n B 1 34 PHE 34 35 35 PHE PHE B . n B 1 35 LYS 35 36 36 LYS LYS B . n B 1 36 HIS 36 37 37 HIS HIS B . n B 1 37 GLN 37 38 38 GLN GLN B . n B 1 38 LEU 38 39 39 LEU LEU B . n B 1 39 SER 39 40 40 SER SER B . n B 1 40 LEU 40 41 41 LEU LEU B . n B 1 41 THR 41 42 42 THR THR B . n B 1 42 PHE 42 43 43 PHE PHE B . n B 1 43 GLN 43 44 44 GLN GLN B . n B 1 44 VAL 44 45 45 VAL VAL B . n B 1 45 THR 45 46 46 THR THR B . n B 1 46 GLN 46 47 47 GLN GLN B . n B 1 47 LYS 47 48 48 LYS LYS B . n B 1 48 THR 48 49 49 THR THR B . n B 1 49 GLN 49 50 50 GLN GLN B . n B 1 50 ARG 50 51 51 ARG ARG B . n B 1 51 ARG 51 52 52 ARG ARG B . n B 1 52 TRP 52 53 53 TRP TRP B . n B 1 53 PHE 53 54 54 PHE PHE B . n B 1 54 LEU 54 55 55 LEU LEU B . n B 1 55 ASP 55 56 56 ASP ASP B . n B 1 56 LYS 56 57 57 LYS LYS B . n B 1 57 LEU 57 58 58 LEU LEU B . n B 1 58 VAL 58 59 59 VAL VAL B . n B 1 59 ASP 59 60 60 ASP ASP B . n B 1 60 GLU 60 61 61 GLU GLU B . n B 1 61 ILE 61 62 62 ILE ILE B . n B 1 62 GLY 62 63 63 GLY GLY B . n B 1 63 VAL 63 64 64 VAL VAL B . n B 1 64 GLY 64 65 65 GLY GLY B . n B 1 65 TYR 65 66 66 TYR TYR B . n B 1 66 VAL 66 67 67 VAL VAL B . n B 1 67 ARG 67 68 68 ARG ARG B . n B 1 68 ASP 68 69 69 ASP ASP B . n B 1 69 ARG 69 70 70 ARG ARG B . n B 1 70 GLY 70 71 71 GLY GLY B . n B 1 71 SER 71 72 72 SER SER B . n B 1 72 VAL 72 73 73 VAL VAL B . n B 1 73 SER 73 74 74 SER SER B . n B 1 74 ASP 74 75 75 ASP ASP B . n B 1 75 TYR 75 76 76 TYR TYR B . n B 1 76 ILE 76 77 77 ILE ILE B . n B 1 77 LEU 77 78 78 LEU LEU B . n B 1 78 SER 78 79 79 SER SER B . n B 1 79 GLU 79 80 80 GLU GLU B . n B 1 80 ILE 80 81 81 ILE ILE B . n B 1 81 LYS 81 82 82 LYS LYS B . n B 1 82 PRO 82 83 83 PRO PRO B . n B 1 83 LEU 83 84 84 LEU LEU B . n B 1 84 HIS 84 85 85 HIS HIS B . n B 1 85 ASN 85 86 86 ASN ASN B . n B 1 86 PHE 86 87 87 PHE PHE B . n B 1 87 LEU 87 88 88 LEU LEU B . n B 1 88 THR 88 89 89 THR THR B . n B 1 89 GLN 89 90 90 GLN GLN B . n B 1 90 LEU 90 91 91 LEU LEU B . n B 1 91 GLN 91 92 92 GLN GLN B . n B 1 92 PRO 92 93 93 PRO PRO B . n B 1 93 PHE 93 94 94 PHE PHE B . n B 1 94 LEU 94 95 95 LEU LEU B . n B 1 95 LYS 95 96 96 LYS LYS B . n B 1 96 LEU 96 97 97 LEU LEU B . n B 1 97 LYS 97 98 98 LYS LYS B . n B 1 98 GLN 98 99 99 GLN GLN B . n B 1 99 LYS 99 100 100 LYS LYS B . n B 1 100 GLN 100 101 101 GLN GLN B . n B 1 101 ALA 101 102 102 ALA ALA B . n B 1 102 ASN 102 103 103 ASN ASN B . n B 1 103 LEU 103 104 104 LEU LEU B . n B 1 104 VAL 104 105 105 VAL VAL B . n B 1 105 LEU 105 106 106 LEU LEU B . n B 1 106 LYS 106 107 107 LYS LYS B . n B 1 107 ILE 107 108 108 ILE ILE B . n B 1 108 ILE 108 109 109 ILE ILE B . n B 1 109 GLU 109 110 110 GLU GLU B . n B 1 110 GLN 110 111 111 GLN GLN B . n B 1 111 LEU 111 112 112 LEU LEU B . n B 1 112 PRO 112 113 113 PRO PRO B . n B 1 113 SER 113 114 114 SER SER B . n B 1 114 ALA 114 115 115 ALA ALA B . n B 1 115 LYS 115 116 116 LYS LYS B . n B 1 116 GLU 116 117 117 GLU GLU B . n B 1 117 SER 117 118 118 SER SER B . n B 1 118 PRO 118 119 119 PRO PRO B . n B 1 119 ASP 119 120 120 ASP ASP B . n B 1 120 LYS 120 121 121 LYS LYS B . n B 1 121 PHE 121 122 122 PHE PHE B . n B 1 122 LEU 122 123 123 LEU LEU B . n B 1 123 GLU 123 124 124 GLU GLU B . n B 1 124 VAL 124 125 125 VAL VAL B . n B 1 125 CYS 125 126 126 CYS CYS B . n B 1 126 THR 126 127 127 THR THR B . n B 1 127 TRP 127 128 128 TRP TRP B . n B 1 128 VAL 128 129 129 VAL VAL B . n B 1 129 ASP 129 130 130 ASP ASP B . n B 1 130 GLN 130 131 131 GLN GLN B . n B 1 131 ILE 131 132 132 ILE ILE B . n B 1 132 ALA 132 133 133 ALA ALA B . n B 1 133 ALA 133 134 134 ALA ALA B . n B 1 134 LEU 134 135 135 LEU LEU B . n B 1 135 ASN 135 136 136 ASN ASN B . n B 1 136 ASP 136 137 137 ASP ASP B . n B 1 137 SER 137 138 138 SER SER B . n B 1 138 LYS 138 139 139 LYS LYS B . n B 1 139 THR 139 140 140 THR THR B . n B 1 140 ARG 140 141 141 ARG ARG B . n B 1 141 LYS 141 142 142 LYS LYS B . n B 1 142 THR 142 143 143 THR THR B . n B 1 143 THR 143 144 144 THR THR B . n B 1 144 SER 144 145 145 SER SER B . n B 1 145 GLU 145 146 146 GLU GLU B . n B 1 146 THR 146 147 147 THR THR B . n B 1 147 VAL 147 148 148 VAL VAL B . n B 1 148 ARG 148 149 149 ARG ARG B . n B 1 149 ALA 149 150 150 ALA ALA B . n B 1 150 VAL 150 151 151 VAL VAL B . n B 1 151 LEU 151 152 152 LEU LEU B . n B 1 152 ASP 152 153 153 ASP ASP B . n C 2 1 DT 1 501 501 DT DT C . n C 2 2 DC 2 502 502 DC DC C . n C 2 3 DA 3 503 503 DA DA C . n C 2 4 DA 4 504 504 DA DA C . n C 2 5 DA 5 505 505 DA DA C . n C 2 6 DA 6 506 506 DA DA C . n C 2 7 DC 7 507 507 DC DC C . n C 2 8 DG 8 508 508 DG DG C . n C 2 9 DT 9 509 509 DT DT C . n C 2 10 DC 10 510 510 DC DC C . n C 2 11 DG 11 511 511 DG DG C . n C 2 12 DT 12 512 512 DT DT C . n C 2 13 DG 13 513 513 DG DG C . n C 2 14 DA 14 514 514 DA DA C . n D 3 1 DG 1 515 515 DG DG D . n D 3 2 DA 2 516 516 DA DA D . n D 3 3 DC 3 517 517 DC DC D . n D 3 4 DA 4 518 518 DA DA D . n D 3 5 DG 5 519 519 DG DG D . n D 3 6 DT 6 520 520 DT DT D . n D 3 7 DT 7 521 521 DT DT D . n D 3 8 DT 8 522 522 DT DT D . n D 3 9 DG 9 523 523 DG DG D . n D 3 10 DG 10 524 524 DG DG D . n E 4 1 DC 1 601 601 DC DC E . n E 4 2 DC 2 602 602 DC DC E . n E 4 3 DA 3 603 603 DA DA E . n E 4 4 DA 4 604 604 DA DA E . n E 4 5 DA 5 605 605 DA DA E . n E 4 6 DC 6 606 606 DC DC E . n E 4 7 DT 7 607 607 DT DT E . n E 4 8 DG 8 608 608 DG DG E . n E 4 9 DT 9 609 609 DT DT E . n E 4 10 DC 10 610 610 DC DC E . n E 4 11 DT 11 611 611 DT DT E . n E 4 12 DC 12 612 612 DC DC E . n E 4 13 DA 13 613 613 DA DA E . n E 4 14 5CM 14 614 614 5CM 5CM E . n F 5 1 DG 1 615 615 DG DG F . n F 5 2 DA 2 616 616 DA DA F . n F 5 3 DC 3 617 617 DC DC F . n F 5 4 DG 4 618 618 DG DG F . n F 5 5 DT 5 619 619 DT DT F . n F 5 6 DT 6 620 620 DT DT F . n F 5 7 DT 7 621 621 DT DT F . n F 5 8 DT 8 622 622 DT DT F . n F 5 9 DG 9 623 623 DG DG F . n F 5 10 DA 10 624 624 DA DA F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 GOL 1 1154 1154 GOL GOL A . H 6 GOL 1 1155 1155 GOL GOL A . I 6 GOL 1 1354 1354 GOL GOL B . J 6 GOL 1 1355 1355 GOL GOL B . K 6 GOL 1 1515 1515 GOL GOL C . L 7 MG 1 1525 1525 MG MG D . M 7 MG 1 1526 1526 MG MG D . N 7 MG 1 1625 1625 MG MG F . O 8 HOH 1 2001 2001 HOH HOH A . O 8 HOH 2 2002 2002 HOH HOH A . O 8 HOH 3 2003 2003 HOH HOH A . O 8 HOH 4 2004 2004 HOH HOH A . O 8 HOH 5 2005 2005 HOH HOH A . O 8 HOH 6 2006 2006 HOH HOH A . O 8 HOH 7 2007 2007 HOH HOH A . O 8 HOH 8 2008 2008 HOH HOH A . O 8 HOH 9 2009 2009 HOH HOH A . O 8 HOH 10 2010 2010 HOH HOH A . O 8 HOH 11 2011 2011 HOH HOH A . O 8 HOH 12 2012 2012 HOH HOH A . O 8 HOH 13 2013 2013 HOH HOH A . O 8 HOH 14 2014 2014 HOH HOH A . O 8 HOH 15 2015 2015 HOH HOH A . O 8 HOH 16 2016 2016 HOH HOH A . O 8 HOH 17 2017 2017 HOH HOH A . O 8 HOH 18 2018 2018 HOH HOH A . O 8 HOH 19 2019 2019 HOH HOH A . O 8 HOH 20 2020 2020 HOH HOH A . O 8 HOH 21 2021 2021 HOH HOH A . O 8 HOH 22 2022 2022 HOH HOH A . O 8 HOH 23 2023 2023 HOH HOH A . O 8 HOH 24 2024 2024 HOH HOH A . O 8 HOH 25 2025 2025 HOH HOH A . O 8 HOH 26 2026 2026 HOH HOH A . O 8 HOH 27 2027 2027 HOH HOH A . O 8 HOH 28 2028 2028 HOH HOH A . O 8 HOH 29 2029 2029 HOH HOH A . O 8 HOH 30 2030 2030 HOH HOH A . O 8 HOH 31 2031 2031 HOH HOH A . O 8 HOH 32 2032 2032 HOH HOH A . O 8 HOH 33 2033 2033 HOH HOH A . O 8 HOH 34 2034 2034 HOH HOH A . O 8 HOH 35 2035 2035 HOH HOH A . O 8 HOH 36 2036 2036 HOH HOH A . O 8 HOH 37 2037 2037 HOH HOH A . O 8 HOH 38 2038 2038 HOH HOH A . O 8 HOH 39 2039 2039 HOH HOH A . O 8 HOH 40 2040 2040 HOH HOH A . O 8 HOH 41 2041 2041 HOH HOH A . O 8 HOH 42 2042 2042 HOH HOH A . O 8 HOH 43 2043 2043 HOH HOH A . O 8 HOH 44 2044 2044 HOH HOH A . O 8 HOH 45 2045 2045 HOH HOH A . O 8 HOH 46 2046 2046 HOH HOH A . O 8 HOH 47 2047 2047 HOH HOH A . O 8 HOH 48 2048 2048 HOH HOH A . O 8 HOH 49 2049 2049 HOH HOH A . O 8 HOH 50 2050 2050 HOH HOH A . O 8 HOH 51 2051 2051 HOH HOH A . O 8 HOH 52 2052 2052 HOH HOH A . O 8 HOH 53 2053 2053 HOH HOH A . O 8 HOH 54 2054 2054 HOH HOH A . O 8 HOH 55 2055 2055 HOH HOH A . O 8 HOH 56 2056 2056 HOH HOH A . P 8 HOH 1 2001 2001 HOH HOH B . P 8 HOH 2 2002 2002 HOH HOH B . P 8 HOH 3 2003 2003 HOH HOH B . P 8 HOH 4 2004 2004 HOH HOH B . P 8 HOH 5 2005 2005 HOH HOH B . P 8 HOH 6 2006 2006 HOH HOH B . P 8 HOH 7 2007 2007 HOH HOH B . P 8 HOH 8 2008 2008 HOH HOH B . P 8 HOH 9 2009 2009 HOH HOH B . P 8 HOH 10 2010 2010 HOH HOH B . P 8 HOH 11 2011 2011 HOH HOH B . P 8 HOH 12 2012 2012 HOH HOH B . P 8 HOH 13 2013 2013 HOH HOH B . P 8 HOH 14 2014 2014 HOH HOH B . P 8 HOH 15 2015 2015 HOH HOH B . P 8 HOH 16 2016 2016 HOH HOH B . P 8 HOH 17 2017 2017 HOH HOH B . P 8 HOH 18 2018 2018 HOH HOH B . P 8 HOH 19 2019 2019 HOH HOH B . P 8 HOH 20 2020 2020 HOH HOH B . P 8 HOH 21 2021 2021 HOH HOH B . P 8 HOH 22 2022 2022 HOH HOH B . P 8 HOH 23 2023 2023 HOH HOH B . P 8 HOH 24 2024 2024 HOH HOH B . P 8 HOH 25 2025 2025 HOH HOH B . P 8 HOH 26 2026 2026 HOH HOH B . P 8 HOH 27 2027 2027 HOH HOH B . P 8 HOH 28 2028 2028 HOH HOH B . P 8 HOH 29 2029 2029 HOH HOH B . P 8 HOH 30 2030 2030 HOH HOH B . P 8 HOH 31 2031 2031 HOH HOH B . P 8 HOH 32 2032 2032 HOH HOH B . P 8 HOH 33 2033 2033 HOH HOH B . P 8 HOH 34 2034 2034 HOH HOH B . P 8 HOH 35 2035 2035 HOH HOH B . P 8 HOH 36 2036 2036 HOH HOH B . P 8 HOH 37 2037 2037 HOH HOH B . P 8 HOH 38 2038 2038 HOH HOH B . P 8 HOH 39 2039 2039 HOH HOH B . P 8 HOH 40 2040 2040 HOH HOH B . P 8 HOH 41 2041 2041 HOH HOH B . P 8 HOH 42 2042 2042 HOH HOH B . Q 8 HOH 1 2001 2001 HOH HOH C . Q 8 HOH 2 2002 2002 HOH HOH C . Q 8 HOH 3 2003 2003 HOH HOH C . Q 8 HOH 4 2004 2004 HOH HOH C . Q 8 HOH 5 2005 2005 HOH HOH C . Q 8 HOH 6 2006 2006 HOH HOH C . Q 8 HOH 7 2007 2007 HOH HOH C . Q 8 HOH 8 2008 2008 HOH HOH C . Q 8 HOH 9 2009 2009 HOH HOH C . Q 8 HOH 10 2010 2010 HOH HOH C . Q 8 HOH 11 2011 2011 HOH HOH C . Q 8 HOH 12 2012 2012 HOH HOH C . Q 8 HOH 13 2013 2013 HOH HOH C . Q 8 HOH 14 2014 2014 HOH HOH C . Q 8 HOH 15 2015 2015 HOH HOH C . Q 8 HOH 16 2016 2016 HOH HOH C . Q 8 HOH 17 2017 2017 HOH HOH C . Q 8 HOH 18 2018 2018 HOH HOH C . Q 8 HOH 19 2019 2019 HOH HOH C . R 8 HOH 1 2001 2001 HOH HOH D . R 8 HOH 2 2002 2002 HOH HOH D . R 8 HOH 3 2003 2003 HOH HOH D . R 8 HOH 4 2004 2004 HOH HOH D . R 8 HOH 5 2005 2005 HOH HOH D . R 8 HOH 6 2006 2006 HOH HOH D . R 8 HOH 7 2007 2007 HOH HOH D . R 8 HOH 8 2008 2008 HOH HOH D . R 8 HOH 9 2009 2009 HOH HOH D . S 8 HOH 1 2001 2001 HOH HOH E . S 8 HOH 2 2002 2002 HOH HOH E . S 8 HOH 3 2003 2003 HOH HOH E . S 8 HOH 4 2004 2004 HOH HOH E . S 8 HOH 5 2005 2005 HOH HOH E . T 8 HOH 1 2001 2001 HOH HOH F . T 8 HOH 2 2002 2002 HOH HOH F . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id E _pdbx_struct_mod_residue.label_comp_id 5CM _pdbx_struct_mod_residue.label_seq_id 14 _pdbx_struct_mod_residue.auth_asym_id E _pdbx_struct_mod_residue.auth_comp_id 5CM _pdbx_struct_mod_residue.auth_seq_id 614 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13930 ? 1 MORE -98.0 ? 1 'SSA (A^2)' 16570 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 18 ? A GLY 19 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 O ? O HOH . ? A HOH 2004 ? 1_555 91.5 ? 2 O ? A GLY 18 ? A GLY 19 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OD2 ? B ASP 19 ? B ASP 20 ? 1_555 88.0 ? 3 O ? O HOH . ? A HOH 2004 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OD2 ? B ASP 19 ? B ASP 20 ? 1_555 92.9 ? 4 O ? A GLY 18 ? A GLY 19 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP3 ? D DG 1 ? D DG 515 ? 1_555 94.4 ? 5 O ? O HOH . ? A HOH 2004 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP3 ? D DG 1 ? D DG 515 ? 1_555 98.2 ? 6 OD2 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP3 ? D DG 1 ? D DG 515 ? 1_555 168.5 ? 7 O ? A GLY 18 ? A GLY 19 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 83.1 ? 8 O ? O HOH . ? A HOH 2004 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 163.0 ? 9 OD2 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 102.9 ? 10 OP3 ? D DG 1 ? D DG 515 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 66.3 ? 11 O ? A GLY 18 ? A GLY 19 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP1 ? E 5CM 14 ? E 5CM 614 ? 1_555 176.5 ? 12 O ? O HOH . ? A HOH 2004 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP1 ? E 5CM 14 ? E 5CM 614 ? 1_555 85.4 ? 13 OD2 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP1 ? E 5CM 14 ? E 5CM 614 ? 1_555 90.5 ? 14 OP3 ? D DG 1 ? D DG 515 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP1 ? E 5CM 14 ? E 5CM 614 ? 1_555 87.7 ? 15 OP2 ? D DG 1 ? D DG 515 ? 1_555 MG ? M MG . ? D MG 1526 ? 1_555 OP1 ? E 5CM 14 ? E 5CM 614 ? 1_555 100.3 ? 16 OD1 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OD1 ? B ASP 19 ? B ASP 20 ? 1_555 81.5 ? 17 OD1 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 "O3'" ? C DA 14 ? C DA 514 ? 1_555 81.2 ? 18 OD1 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 "O3'" ? C DA 14 ? C DA 514 ? 1_555 158.5 ? 19 OD1 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 91.5 ? 20 OD1 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 81.9 ? 21 "O3'" ? C DA 14 ? C DA 514 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP2 ? D DG 1 ? D DG 515 ? 1_555 86.0 ? 22 OD1 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 "O3'" ? E 5CM 14 ? E 5CM 614 ? 1_555 167.0 ? 23 OD1 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 "O3'" ? E 5CM 14 ? E 5CM 614 ? 1_555 91.3 ? 24 "O3'" ? C DA 14 ? C DA 514 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 "O3'" ? E 5CM 14 ? E 5CM 614 ? 1_555 108.0 ? 25 OP2 ? D DG 1 ? D DG 515 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 "O3'" ? E 5CM 14 ? E 5CM 614 ? 1_555 98.2 ? 26 OD1 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 83.3 ? 27 OD1 ? B ASP 19 ? B ASP 20 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 96.8 ? 28 "O3'" ? C DA 14 ? C DA 514 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 93.7 ? 29 OP2 ? D DG 1 ? D DG 515 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 174.8 ? 30 "O3'" ? E 5CM 14 ? E 5CM 614 ? 1_555 MG ? L MG . ? D MG 1525 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 86.8 ? 31 OD2 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 O ? O HOH . ? A HOH 2006 ? 1_555 92.2 ? 32 OD2 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 O ? B GLY 18 ? B GLY 19 ? 1_555 82.0 ? 33 O ? O HOH . ? A HOH 2006 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 O ? B GLY 18 ? B GLY 19 ? 1_555 89.1 ? 34 OD2 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? C DA 14 ? C DA 514 ? 1_555 83.6 ? 35 O ? O HOH . ? A HOH 2006 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? C DA 14 ? C DA 514 ? 1_555 88.0 ? 36 O ? B GLY 18 ? B GLY 19 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? C DA 14 ? C DA 514 ? 1_555 165.2 ? 37 OD2 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 95.1 ? 38 O ? O HOH . ? A HOH 2006 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 169.4 ? 39 O ? B GLY 18 ? B GLY 19 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 84.2 ? 40 OP1 ? C DA 14 ? C DA 514 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP1 ? F DG 1 ? F DG 615 ? 1_555 100.5 ? 41 OD2 ? A ASP 19 ? A ASP 20 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP2 ? F DG 1 ? F DG 615 ? 1_555 164.5 ? 42 O ? O HOH . ? A HOH 2006 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP2 ? F DG 1 ? F DG 615 ? 1_555 102.6 ? 43 O ? B GLY 18 ? B GLY 19 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP2 ? F DG 1 ? F DG 615 ? 1_555 93.3 ? 44 OP1 ? C DA 14 ? C DA 514 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP2 ? F DG 1 ? F DG 615 ? 1_555 101.5 ? 45 OP1 ? F DG 1 ? F DG 615 ? 1_555 MG ? N MG . ? F MG 1625 ? 1_555 OP2 ? F DG 1 ? F DG 615 ? 1_555 69.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-04 2 'Structure model' 1 1 2012-09-12 3 'Structure model' 1 2 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' struct_conn 8 3 'Structure model' struct_conn_type 9 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.value' 21 3 'Structure model' '_struct_conn.conn_type_id' 22 3 'Structure model' '_struct_conn.id' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 3 'Structure model' '_struct_conn_type.id' 40 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 41 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 42 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -11.0581 _pdbx_refine_tls.origin_y 25.5431 _pdbx_refine_tls.origin_z -25.5515 _pdbx_refine_tls.T[1][1] 0.3051 _pdbx_refine_tls.T[2][2] 0.3003 _pdbx_refine_tls.T[3][3] 0.3224 _pdbx_refine_tls.T[1][2] -0.0330 _pdbx_refine_tls.T[1][3] -0.0816 _pdbx_refine_tls.T[2][3] 0.0491 _pdbx_refine_tls.L[1][1] 2.4134 _pdbx_refine_tls.L[2][2] 2.1327 _pdbx_refine_tls.L[3][3] 4.2129 _pdbx_refine_tls.L[1][2] -1.1993 _pdbx_refine_tls.L[1][3] 1.9738 _pdbx_refine_tls.L[2][3] -2.3737 _pdbx_refine_tls.S[1][1] -0.1945 _pdbx_refine_tls.S[1][2] 0.0110 _pdbx_refine_tls.S[1][3] 0.1487 _pdbx_refine_tls.S[2][1] 0.3802 _pdbx_refine_tls.S[2][2] -0.2611 _pdbx_refine_tls.S[2][3] -0.1669 _pdbx_refine_tls.S[3][1] -0.4079 _pdbx_refine_tls.S[3][2] 0.1685 _pdbx_refine_tls.S[3][3] 0.3596 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ALL # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2008 ? ? O A HOH 2009 ? ? 1.86 2 1 OP2 C DT 509 ? ? O C HOH 2009 ? ? 1.97 3 1 O1 B GOL 1355 ? ? O B HOH 2031 ? ? 2.00 4 1 NH1 A ARG 141 ? ? O3 A GOL 1155 ? ? 2.14 5 1 O C HOH 2017 ? ? O C HOH 2019 ? ? 2.15 6 1 N B ASN 6 ? ? O3 B GOL 1354 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P D DG 515 ? ? OP3 D DG 515 ? ? 1.496 1.607 -0.111 0.012 N 2 1 P F DG 615 ? ? OP3 F DG 615 ? ? 1.501 1.607 -0.106 0.012 N 3 1 "C1'" F DA 624 ? ? N9 F DA 624 ? ? 2.946 1.488 1.458 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 502 ? ? "C1'" C DC 502 ? ? N1 C DC 502 ? ? 110.46 108.30 2.16 0.30 N 2 1 "O4'" C DC 507 ? ? "C1'" C DC 507 ? ? N1 C DC 507 ? ? 111.00 108.30 2.70 0.30 N 3 1 "O4'" C DG 513 ? ? "C1'" C DG 513 ? ? N9 C DG 513 ? ? 102.62 108.00 -5.38 0.70 N 4 1 N9 C DA 514 ? ? "C1'" C DA 514 ? ? "C2'" C DA 514 ? ? 123.97 114.30 9.67 1.40 N 5 1 "O4'" D DA 516 ? ? "C1'" D DA 516 ? ? N9 D DA 516 ? ? 112.46 108.30 4.16 0.30 N 6 1 "O4'" D DT 522 ? ? "C1'" D DT 522 ? ? N1 D DT 522 ? ? 103.01 108.00 -4.99 0.70 N 7 1 "C3'" D DG 523 ? ? "C2'" D DG 523 ? ? "C1'" D DG 523 ? ? 96.80 102.40 -5.60 0.80 N 8 1 "O4'" D DG 524 ? ? "C1'" D DG 524 ? ? N9 D DG 524 ? ? 111.73 108.30 3.43 0.30 N 9 1 "C3'" E DT 609 ? ? "C2'" E DT 609 ? ? "C1'" E DT 609 ? ? 96.52 102.40 -5.88 0.80 N 10 1 "O4'" E DT 609 ? ? "C1'" E DT 609 ? ? N1 E DT 609 ? ? 103.75 108.00 -4.25 0.70 N 11 1 "O4'" E DA 613 ? ? "C1'" E DA 613 ? ? N9 E DA 613 ? ? 101.95 108.00 -6.05 0.70 N 12 1 "O4'" F DA 616 ? ? "C1'" F DA 616 ? ? N9 F DA 616 ? ? 111.50 108.30 3.20 0.30 N 13 1 N9 F DA 624 ? ? "C1'" F DA 624 ? ? "C2'" F DA 624 ? ? 137.39 114.30 23.09 1.40 N 14 1 "O4'" F DA 624 ? ? "C1'" F DA 624 ? ? N9 F DA 624 ? ? 47.86 108.00 -60.14 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 96 ? ? -122.40 -58.21 2 1 LYS A 142 ? ? -122.88 -61.31 3 1 LYS B 139 ? ? -130.58 -56.62 4 1 LYS B 142 ? ? -127.36 -58.95 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id F _pdbx_validate_planes.auth_seq_id 624 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.274 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 GOL C1 C N N 317 GOL O1 O N N 318 GOL C2 C N N 319 GOL O2 O N N 320 GOL C3 C N N 321 GOL O3 O N N 322 GOL H11 H N N 323 GOL H12 H N N 324 GOL HO1 H N N 325 GOL H2 H N N 326 GOL HO2 H N N 327 GOL H31 H N N 328 GOL H32 H N N 329 GOL HO3 H N N 330 HIS N N N N 331 HIS CA C N S 332 HIS C C N N 333 HIS O O N N 334 HIS CB C N N 335 HIS CG C Y N 336 HIS ND1 N Y N 337 HIS CD2 C Y N 338 HIS CE1 C Y N 339 HIS NE2 N Y N 340 HIS OXT O N N 341 HIS H H N N 342 HIS H2 H N N 343 HIS HA H N N 344 HIS HB2 H N N 345 HIS HB3 H N N 346 HIS HD1 H N N 347 HIS HD2 H N N 348 HIS HE1 H N N 349 HIS HE2 H N N 350 HIS HXT H N N 351 HOH O O N N 352 HOH H1 H N N 353 HOH H2 H N N 354 ILE N N N N 355 ILE CA C N S 356 ILE C C N N 357 ILE O O N N 358 ILE CB C N S 359 ILE CG1 C N N 360 ILE CG2 C N N 361 ILE CD1 C N N 362 ILE OXT O N N 363 ILE H H N N 364 ILE H2 H N N 365 ILE HA H N N 366 ILE HB H N N 367 ILE HG12 H N N 368 ILE HG13 H N N 369 ILE HG21 H N N 370 ILE HG22 H N N 371 ILE HG23 H N N 372 ILE HD11 H N N 373 ILE HD12 H N N 374 ILE HD13 H N N 375 ILE HXT H N N 376 LEU N N N N 377 LEU CA C N S 378 LEU C C N N 379 LEU O O N N 380 LEU CB C N N 381 LEU CG C N N 382 LEU CD1 C N N 383 LEU CD2 C N N 384 LEU OXT O N N 385 LEU H H N N 386 LEU H2 H N N 387 LEU HA H N N 388 LEU HB2 H N N 389 LEU HB3 H N N 390 LEU HG H N N 391 LEU HD11 H N N 392 LEU HD12 H N N 393 LEU HD13 H N N 394 LEU HD21 H N N 395 LEU HD22 H N N 396 LEU HD23 H N N 397 LEU HXT H N N 398 LYS N N N N 399 LYS CA C N S 400 LYS C C N N 401 LYS O O N N 402 LYS CB C N N 403 LYS CG C N N 404 LYS CD C N N 405 LYS CE C N N 406 LYS NZ N N N 407 LYS OXT O N N 408 LYS H H N N 409 LYS H2 H N N 410 LYS HA H N N 411 LYS HB2 H N N 412 LYS HB3 H N N 413 LYS HG2 H N N 414 LYS HG3 H N N 415 LYS HD2 H N N 416 LYS HD3 H N N 417 LYS HE2 H N N 418 LYS HE3 H N N 419 LYS HZ1 H N N 420 LYS HZ2 H N N 421 LYS HZ3 H N N 422 LYS HXT H N N 423 MG MG MG N N 424 PHE N N N N 425 PHE CA C N S 426 PHE C C N N 427 PHE O O N N 428 PHE CB C N N 429 PHE CG C Y N 430 PHE CD1 C Y N 431 PHE CD2 C Y N 432 PHE CE1 C Y N 433 PHE CE2 C Y N 434 PHE CZ C Y N 435 PHE OXT O N N 436 PHE H H N N 437 PHE H2 H N N 438 PHE HA H N N 439 PHE HB2 H N N 440 PHE HB3 H N N 441 PHE HD1 H N N 442 PHE HD2 H N N 443 PHE HE1 H N N 444 PHE HE2 H N N 445 PHE HZ H N N 446 PHE HXT H N N 447 PRO N N N N 448 PRO CA C N S 449 PRO C C N N 450 PRO O O N N 451 PRO CB C N N 452 PRO CG C N N 453 PRO CD C N N 454 PRO OXT O N N 455 PRO H H N N 456 PRO HA H N N 457 PRO HB2 H N N 458 PRO HB3 H N N 459 PRO HG2 H N N 460 PRO HG3 H N N 461 PRO HD2 H N N 462 PRO HD3 H N N 463 PRO HXT H N N 464 SER N N N N 465 SER CA C N S 466 SER C C N N 467 SER O O N N 468 SER CB C N N 469 SER OG O N N 470 SER OXT O N N 471 SER H H N N 472 SER H2 H N N 473 SER HA H N N 474 SER HB2 H N N 475 SER HB3 H N N 476 SER HG H N N 477 SER HXT H N N 478 THR N N N N 479 THR CA C N S 480 THR C C N N 481 THR O O N N 482 THR CB C N R 483 THR OG1 O N N 484 THR CG2 C N N 485 THR OXT O N N 486 THR H H N N 487 THR H2 H N N 488 THR HA H N N 489 THR HB H N N 490 THR HG1 H N N 491 THR HG21 H N N 492 THR HG22 H N N 493 THR HG23 H N N 494 THR HXT H N N 495 TRP N N N N 496 TRP CA C N S 497 TRP C C N N 498 TRP O O N N 499 TRP CB C N N 500 TRP CG C Y N 501 TRP CD1 C Y N 502 TRP CD2 C Y N 503 TRP NE1 N Y N 504 TRP CE2 C Y N 505 TRP CE3 C Y N 506 TRP CZ2 C Y N 507 TRP CZ3 C Y N 508 TRP CH2 C Y N 509 TRP OXT O N N 510 TRP H H N N 511 TRP H2 H N N 512 TRP HA H N N 513 TRP HB2 H N N 514 TRP HB3 H N N 515 TRP HD1 H N N 516 TRP HE1 H N N 517 TRP HE3 H N N 518 TRP HZ2 H N N 519 TRP HZ3 H N N 520 TRP HH2 H N N 521 TRP HXT H N N 522 TYR N N N N 523 TYR CA C N S 524 TYR C C N N 525 TYR O O N N 526 TYR CB C N N 527 TYR CG C Y N 528 TYR CD1 C Y N 529 TYR CD2 C Y N 530 TYR CE1 C Y N 531 TYR CE2 C Y N 532 TYR CZ C Y N 533 TYR OH O N N 534 TYR OXT O N N 535 TYR H H N N 536 TYR H2 H N N 537 TYR HA H N N 538 TYR HB2 H N N 539 TYR HB3 H N N 540 TYR HD1 H N N 541 TYR HD2 H N N 542 TYR HE1 H N N 543 TYR HE2 H N N 544 TYR HH H N N 545 TYR HXT H N N 546 VAL N N N N 547 VAL CA C N S 548 VAL C C N N 549 VAL O O N N 550 VAL CB C N N 551 VAL CG1 C N N 552 VAL CG2 C N N 553 VAL OXT O N N 554 VAL H H N N 555 VAL H2 H N N 556 VAL HA H N N 557 VAL HB H N N 558 VAL HG11 H N N 559 VAL HG12 H N N 560 VAL HG13 H N N 561 VAL HG21 H N N 562 VAL HG22 H N N 563 VAL HG23 H N N 564 VAL HXT H N N 565 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 GOL C1 O1 sing N N 316 GOL C1 C2 sing N N 317 GOL C1 H11 sing N N 318 GOL C1 H12 sing N N 319 GOL O1 HO1 sing N N 320 GOL C2 O2 sing N N 321 GOL C2 C3 sing N N 322 GOL C2 H2 sing N N 323 GOL O2 HO2 sing N N 324 GOL C3 O3 sing N N 325 GOL C3 H31 sing N N 326 GOL C3 H32 sing N N 327 GOL O3 HO3 sing N N 328 HIS N CA sing N N 329 HIS N H sing N N 330 HIS N H2 sing N N 331 HIS CA C sing N N 332 HIS CA CB sing N N 333 HIS CA HA sing N N 334 HIS C O doub N N 335 HIS C OXT sing N N 336 HIS CB CG sing N N 337 HIS CB HB2 sing N N 338 HIS CB HB3 sing N N 339 HIS CG ND1 sing Y N 340 HIS CG CD2 doub Y N 341 HIS ND1 CE1 doub Y N 342 HIS ND1 HD1 sing N N 343 HIS CD2 NE2 sing Y N 344 HIS CD2 HD2 sing N N 345 HIS CE1 NE2 sing Y N 346 HIS CE1 HE1 sing N N 347 HIS NE2 HE2 sing N N 348 HIS OXT HXT sing N N 349 HOH O H1 sing N N 350 HOH O H2 sing N N 351 ILE N CA sing N N 352 ILE N H sing N N 353 ILE N H2 sing N N 354 ILE CA C sing N N 355 ILE CA CB sing N N 356 ILE CA HA sing N N 357 ILE C O doub N N 358 ILE C OXT sing N N 359 ILE CB CG1 sing N N 360 ILE CB CG2 sing N N 361 ILE CB HB sing N N 362 ILE CG1 CD1 sing N N 363 ILE CG1 HG12 sing N N 364 ILE CG1 HG13 sing N N 365 ILE CG2 HG21 sing N N 366 ILE CG2 HG22 sing N N 367 ILE CG2 HG23 sing N N 368 ILE CD1 HD11 sing N N 369 ILE CD1 HD12 sing N N 370 ILE CD1 HD13 sing N N 371 ILE OXT HXT sing N N 372 LEU N CA sing N N 373 LEU N H sing N N 374 LEU N H2 sing N N 375 LEU CA C sing N N 376 LEU CA CB sing N N 377 LEU CA HA sing N N 378 LEU C O doub N N 379 LEU C OXT sing N N 380 LEU CB CG sing N N 381 LEU CB HB2 sing N N 382 LEU CB HB3 sing N N 383 LEU CG CD1 sing N N 384 LEU CG CD2 sing N N 385 LEU CG HG sing N N 386 LEU CD1 HD11 sing N N 387 LEU CD1 HD12 sing N N 388 LEU CD1 HD13 sing N N 389 LEU CD2 HD21 sing N N 390 LEU CD2 HD22 sing N N 391 LEU CD2 HD23 sing N N 392 LEU OXT HXT sing N N 393 LYS N CA sing N N 394 LYS N H sing N N 395 LYS N H2 sing N N 396 LYS CA C sing N N 397 LYS CA CB sing N N 398 LYS CA HA sing N N 399 LYS C O doub N N 400 LYS C OXT sing N N 401 LYS CB CG sing N N 402 LYS CB HB2 sing N N 403 LYS CB HB3 sing N N 404 LYS CG CD sing N N 405 LYS CG HG2 sing N N 406 LYS CG HG3 sing N N 407 LYS CD CE sing N N 408 LYS CD HD2 sing N N 409 LYS CD HD3 sing N N 410 LYS CE NZ sing N N 411 LYS CE HE2 sing N N 412 LYS CE HE3 sing N N 413 LYS NZ HZ1 sing N N 414 LYS NZ HZ2 sing N N 415 LYS NZ HZ3 sing N N 416 LYS OXT HXT sing N N 417 PHE N CA sing N N 418 PHE N H sing N N 419 PHE N H2 sing N N 420 PHE CA C sing N N 421 PHE CA CB sing N N 422 PHE CA HA sing N N 423 PHE C O doub N N 424 PHE C OXT sing N N 425 PHE CB CG sing N N 426 PHE CB HB2 sing N N 427 PHE CB HB3 sing N N 428 PHE CG CD1 doub Y N 429 PHE CG CD2 sing Y N 430 PHE CD1 CE1 sing Y N 431 PHE CD1 HD1 sing N N 432 PHE CD2 CE2 doub Y N 433 PHE CD2 HD2 sing N N 434 PHE CE1 CZ doub Y N 435 PHE CE1 HE1 sing N N 436 PHE CE2 CZ sing Y N 437 PHE CE2 HE2 sing N N 438 PHE CZ HZ sing N N 439 PHE OXT HXT sing N N 440 PRO N CA sing N N 441 PRO N CD sing N N 442 PRO N H sing N N 443 PRO CA C sing N N 444 PRO CA CB sing N N 445 PRO CA HA sing N N 446 PRO C O doub N N 447 PRO C OXT sing N N 448 PRO CB CG sing N N 449 PRO CB HB2 sing N N 450 PRO CB HB3 sing N N 451 PRO CG CD sing N N 452 PRO CG HG2 sing N N 453 PRO CG HG3 sing N N 454 PRO CD HD2 sing N N 455 PRO CD HD3 sing N N 456 PRO OXT HXT sing N N 457 SER N CA sing N N 458 SER N H sing N N 459 SER N H2 sing N N 460 SER CA C sing N N 461 SER CA CB sing N N 462 SER CA HA sing N N 463 SER C O doub N N 464 SER C OXT sing N N 465 SER CB OG sing N N 466 SER CB HB2 sing N N 467 SER CB HB3 sing N N 468 SER OG HG sing N N 469 SER OXT HXT sing N N 470 THR N CA sing N N 471 THR N H sing N N 472 THR N H2 sing N N 473 THR CA C sing N N 474 THR CA CB sing N N 475 THR CA HA sing N N 476 THR C O doub N N 477 THR C OXT sing N N 478 THR CB OG1 sing N N 479 THR CB CG2 sing N N 480 THR CB HB sing N N 481 THR OG1 HG1 sing N N 482 THR CG2 HG21 sing N N 483 THR CG2 HG22 sing N N 484 THR CG2 HG23 sing N N 485 THR OXT HXT sing N N 486 TRP N CA sing N N 487 TRP N H sing N N 488 TRP N H2 sing N N 489 TRP CA C sing N N 490 TRP CA CB sing N N 491 TRP CA HA sing N N 492 TRP C O doub N N 493 TRP C OXT sing N N 494 TRP CB CG sing N N 495 TRP CB HB2 sing N N 496 TRP CB HB3 sing N N 497 TRP CG CD1 doub Y N 498 TRP CG CD2 sing Y N 499 TRP CD1 NE1 sing Y N 500 TRP CD1 HD1 sing N N 501 TRP CD2 CE2 doub Y N 502 TRP CD2 CE3 sing Y N 503 TRP NE1 CE2 sing Y N 504 TRP NE1 HE1 sing N N 505 TRP CE2 CZ2 sing Y N 506 TRP CE3 CZ3 doub Y N 507 TRP CE3 HE3 sing N N 508 TRP CZ2 CH2 doub Y N 509 TRP CZ2 HZ2 sing N N 510 TRP CZ3 CH2 sing Y N 511 TRP CZ3 HZ3 sing N N 512 TRP CH2 HH2 sing N N 513 TRP OXT HXT sing N N 514 TYR N CA sing N N 515 TYR N H sing N N 516 TYR N H2 sing N N 517 TYR CA C sing N N 518 TYR CA CB sing N N 519 TYR CA HA sing N N 520 TYR C O doub N N 521 TYR C OXT sing N N 522 TYR CB CG sing N N 523 TYR CB HB2 sing N N 524 TYR CB HB3 sing N N 525 TYR CG CD1 doub Y N 526 TYR CG CD2 sing Y N 527 TYR CD1 CE1 sing Y N 528 TYR CD1 HD1 sing N N 529 TYR CD2 CE2 doub Y N 530 TYR CD2 HD2 sing N N 531 TYR CE1 CZ doub Y N 532 TYR CE1 HE1 sing N N 533 TYR CE2 CZ sing Y N 534 TYR CE2 HE2 sing N N 535 TYR CZ OH sing N N 536 TYR OH HH sing N N 537 TYR OXT HXT sing N N 538 VAL N CA sing N N 539 VAL N H sing N N 540 VAL N H2 sing N N 541 VAL CA C sing N N 542 VAL CA CB sing N N 543 VAL CA HA sing N N 544 VAL C O doub N N 545 VAL C OXT sing N N 546 VAL CB CG1 sing N N 547 VAL CB CG2 sing N N 548 VAL CB HB sing N N 549 VAL CG1 HG11 sing N N 550 VAL CG1 HG12 sing N N 551 VAL CG1 HG13 sing N N 552 VAL CG2 HG21 sing N N 553 VAL CG2 HG22 sing N N 554 VAL CG2 HG23 sing N N 555 VAL OXT HXT sing N N 556 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4AQX 'double helix' 4AQX 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C DT 1 1_555 F DA 10 1_555 -0.026 -0.237 0.802 -12.902 -8.462 1.493 1 C_DT501:DA624_F C 501 ? F 624 ? 20 1 1 C DC 2 1_555 F DG 9 1_555 0.154 -0.167 0.343 -8.093 -15.891 1.672 2 C_DC502:DG623_F C 502 ? F 623 ? 19 1 1 C DA 3 1_555 F DT 8 1_555 0.135 -0.203 0.049 2.482 -15.388 2.709 3 C_DA503:DT622_F C 503 ? F 622 ? 20 1 1 C DA 4 1_555 F DT 7 1_555 0.450 -0.017 0.122 7.014 -12.902 2.952 4 C_DA504:DT621_F C 504 ? F 621 ? 20 1 1 C DA 5 1_555 F DT 6 1_555 -0.067 -0.034 0.123 10.473 -15.063 2.099 5 C_DA505:DT620_F C 505 ? F 620 ? 20 1 1 C DA 6 1_555 F DT 5 1_555 0.266 -0.073 -0.013 3.431 -9.026 7.283 6 C_DA506:DT619_F C 506 ? F 619 ? 20 1 1 C DC 7 1_555 F DG 4 1_555 0.524 -0.191 -0.084 14.462 -20.705 5.356 7 C_DC507:DG618_F C 507 ? F 618 ? 19 1 1 C DG 8 1_555 F DC 3 1_555 0.047 -0.250 0.291 -5.540 -11.786 -0.822 8 C_DG508:DC617_F C 508 ? F 617 ? 19 1 1 C DT 9 1_555 F DA 2 1_555 -0.084 -0.093 -0.139 -1.235 2.815 5.216 9 C_DT509:DA616_F C 509 ? F 616 ? 20 1 1 C DC 10 1_555 F DG 1 1_555 -0.073 -0.155 0.380 0.224 -15.083 -1.492 10 C_DC510:DG615_F C 510 ? F 615 ? 19 1 1 C DG 11 1_555 E 5CM 14 1_555 0.207 -0.072 0.744 11.290 -17.498 -1.841 11 C_DG511:5CM614_E C 511 ? E 614 ? 19 1 1 C DT 12 1_555 E DA 13 1_555 -0.196 -0.267 0.508 1.693 -24.080 -0.460 12 C_DT512:DA613_E C 512 ? E 613 ? 20 1 1 C DG 13 1_555 E DC 12 1_555 -0.158 0.124 0.661 -2.649 -26.415 5.336 13 C_DG513:DC612_E C 513 ? E 612 ? 19 1 1 C DA 14 1_555 E DT 11 1_555 0.289 -0.119 0.405 -11.866 -21.046 -5.323 14 C_DA514:DT611_E C 514 ? E 611 ? 20 1 1 D DG 1 1_555 E DC 10 1_555 -0.392 -0.129 0.050 -4.203 -13.339 1.141 15 D_DG515:DC610_E D 515 ? E 610 ? 19 1 1 D DA 2 1_555 E DT 9 1_555 0.292 -0.216 -0.096 -0.543 1.386 1.761 16 D_DA516:DT609_E D 516 ? E 609 ? 20 1 1 D DC 3 1_555 E DG 8 1_555 0.367 -0.334 -0.039 4.711 -11.242 -1.125 17 D_DC517:DG608_E D 517 ? E 608 ? 19 1 1 D DA 4 1_555 E DT 7 1_555 0.121 -0.361 0.189 -6.178 -10.670 5.039 18 D_DA518:DT607_E D 518 ? E 607 ? 20 1 1 D DG 5 1_555 E DC 6 1_555 -0.417 -0.081 -0.162 -2.570 -14.273 2.721 19 D_DG519:DC606_E D 519 ? E 606 ? 19 1 1 D DT 6 1_555 E DA 5 1_555 0.017 -0.272 0.184 -10.390 -16.841 2.192 20 D_DT520:DA605_E D 520 ? E 605 ? 20 1 1 D DT 7 1_555 E DA 4 1_555 -0.429 0.005 0.242 -14.983 -13.231 2.348 21 D_DT521:DA604_E D 521 ? E 604 ? 20 1 1 D DT 8 1_555 E DA 3 1_555 0.175 -0.238 -0.151 -3.079 -13.538 1.977 22 D_DT522:DA603_E D 522 ? E 603 ? 20 1 1 D DG 9 1_555 E DC 2 1_555 -0.305 -0.373 0.235 12.451 -4.716 -0.128 23 D_DG523:DC602_E D 523 ? E 602 ? 19 1 1 D DG 10 1_555 E DC 1 1_555 -0.280 -0.048 0.009 17.118 -4.826 0.387 24 D_DG524:DC601_E D 524 ? E 601 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C DT 1 1_555 F DA 10 1_555 C DC 2 1_555 F DG 9 1_555 -0.444 -0.585 3.259 4.847 -15.093 31.923 1.315 1.457 3.119 -25.567 -8.210 35.551 1 CC_DT501DC502:DG623DA624_FF C 501 ? F 624 ? C 502 ? F 623 ? 1 C DC 2 1_555 F DG 9 1_555 C DA 3 1_555 F DT 8 1_555 -0.483 0.432 3.124 5.094 11.878 34.606 -0.878 1.432 3.009 19.160 -8.217 36.872 2 CC_DC502DA503:DT622DG623_FF C 502 ? F 623 ? C 503 ? F 622 ? 1 C DA 3 1_555 F DT 8 1_555 C DA 4 1_555 F DT 7 1_555 0.442 -0.546 3.153 0.577 -2.547 34.129 -0.537 -0.662 3.191 -4.332 -0.981 34.225 3 CC_DA503DA504:DT621DT622_FF C 503 ? F 622 ? C 504 ? F 621 ? 1 C DA 4 1_555 F DT 7 1_555 C DA 5 1_555 F DT 6 1_555 0.117 -0.665 3.162 0.252 -4.843 33.508 -0.377 -0.160 3.224 -8.345 -0.434 33.848 4 CC_DA504DA505:DT620DT621_FF C 504 ? F 621 ? C 505 ? F 620 ? 1 C DA 5 1_555 F DT 6 1_555 C DA 6 1_555 F DT 5 1_555 0.340 -0.791 3.523 -0.695 -1.896 33.429 -1.035 -0.714 3.553 -3.292 1.208 33.488 5 CC_DA505DA506:DT619DT620_FF C 505 ? F 620 ? C 506 ? F 619 ? 1 C DA 6 1_555 F DT 5 1_555 C DC 7 1_555 F DG 4 1_555 0.429 -0.783 3.011 0.044 4.759 32.166 -2.152 -0.759 2.869 8.531 -0.079 32.507 6 CC_DA506DC507:DG618DT619_FF C 506 ? F 619 ? C 507 ? F 618 ? 1 C DC 7 1_555 F DG 4 1_555 C DG 8 1_555 F DC 3 1_555 -0.061 -1.393 3.597 -2.532 11.549 34.230 -3.931 -0.271 2.984 18.935 4.151 36.157 7 CC_DC507DG508:DC617DG618_FF C 507 ? F 618 ? C 508 ? F 617 ? 1 C DG 8 1_555 F DC 3 1_555 C DT 9 1_555 F DA 2 1_555 -0.484 -0.901 3.352 3.458 -2.068 26.197 -1.404 1.995 3.321 -4.529 -7.572 26.499 8 CC_DG508DT509:DA616DC617_FF C 508 ? F 617 ? C 509 ? F 616 ? 1 C DT 9 1_555 F DA 2 1_555 C DC 10 1_555 F DG 1 1_555 -1.612 0.238 3.444 -8.101 -4.784 36.624 1.047 1.339 3.648 -7.463 12.637 37.773 9 CC_DT509DC510:DG615DA616_FF C 509 ? F 616 ? C 510 ? F 615 ? 1 C DC 10 1_555 F DG 1 1_555 C DG 11 1_555 E 5CM 14 1_555 -0.257 0.283 3.071 -2.887 4.761 34.542 -0.210 0.015 3.092 7.954 4.824 34.974 10 CC_DC510DG511:5CM614DG615_EF C 510 ? F 615 ? C 511 ? E 614 ? 1 C DG 11 1_555 E 5CM 14 1_555 C DT 12 1_555 E DA 13 1_555 0.024 -0.897 3.484 1.868 -8.374 26.848 0.328 0.436 3.588 -17.477 -3.899 28.162 11 CC_DG511DT512:DA6135CM614_EE C 511 ? E 614 ? C 512 ? E 613 ? 1 C DT 12 1_555 E DA 13 1_555 C DG 13 1_555 E DC 12 1_555 0.351 2.501 3.976 0.343 -17.578 54.891 3.665 -0.344 3.110 -18.544 -0.362 57.429 12 CC_DT512DG513:DC612DA613_EE C 512 ? E 613 ? C 513 ? E 612 ? 1 C DG 13 1_555 E DC 12 1_555 C DA 14 1_555 E DT 11 1_555 -0.505 -0.316 3.629 1.466 -12.704 30.328 1.898 1.176 3.454 -23.038 -2.658 32.856 13 CC_DG513DA514:DT611DC612_EE C 513 ? E 612 ? C 514 ? E 611 ? 1 C DA 14 1_555 E DT 11 1_555 D DG 1 1_555 E DC 10 1_555 0.465 -0.064 3.091 4.670 8.546 30.042 -1.635 -0.026 2.997 15.967 -8.725 31.546 14 CD_DA514DG515:DC610DT611_EE C 514 ? E 611 ? D 515 ? E 610 ? 1 D DG 1 1_555 E DC 10 1_555 D DA 2 1_555 E DT 9 1_555 1.437 0.264 3.326 6.101 -1.764 39.348 0.602 -1.369 3.487 -2.599 -8.990 39.837 15 DD_DG515DA516:DT609DC610_EE D 515 ? E 610 ? D 516 ? E 609 ? 1 D DA 2 1_555 E DT 9 1_555 D DC 3 1_555 E DG 8 1_555 0.670 -0.917 3.322 0.786 -3.100 26.969 -1.145 -1.222 3.422 -6.617 -1.677 27.155 16 DD_DA516DC517:DG608DT609_EE D 516 ? E 609 ? D 517 ? E 608 ? 1 D DC 3 1_555 E DG 8 1_555 D DA 4 1_555 E DT 7 1_555 0.092 -1.143 3.513 -0.039 7.652 35.795 -2.916 -0.152 3.209 12.277 0.062 36.578 17 DD_DC517DA518:DT607DG608_EE D 517 ? E 608 ? D 518 ? E 607 ? 1 D DA 4 1_555 E DT 7 1_555 D DG 5 1_555 E DC 6 1_555 -0.316 -0.846 3.220 3.658 7.412 26.601 -3.436 1.484 2.818 15.636 -7.717 27.833 18 DD_DA518DG519:DC606DT607_EE D 518 ? E 607 ? D 519 ? E 606 ? 1 D DG 5 1_555 E DC 6 1_555 D DT 6 1_555 E DA 5 1_555 -0.041 -1.102 3.538 -0.633 0.921 35.181 -1.971 -0.034 3.510 1.524 1.047 35.199 19 DD_DG519DT520:DA605DC606_EE D 519 ? E 606 ? D 520 ? E 605 ? 1 D DT 6 1_555 E DA 5 1_555 D DT 7 1_555 E DA 4 1_555 -0.284 -0.730 3.311 -0.038 -2.505 32.644 -0.854 0.498 3.357 -4.449 0.067 32.737 20 DD_DT520DT521:DA604DA605_EE D 520 ? E 605 ? D 521 ? E 604 ? 1 D DT 7 1_555 E DA 4 1_555 D DT 8 1_555 E DA 3 1_555 -0.568 -0.479 2.960 1.453 0.158 32.659 -0.875 1.235 2.930 0.281 -2.583 32.690 21 DD_DT521DT522:DA603DA604_EE D 521 ? E 604 ? D 522 ? E 603 ? 1 D DT 8 1_555 E DA 3 1_555 D DG 9 1_555 E DC 2 1_555 0.488 0.920 3.103 -4.921 8.581 30.452 0.154 -1.754 3.126 15.821 9.073 31.982 22 DD_DT522DG523:DC602DA603_EE D 522 ? E 603 ? D 523 ? E 602 ? 1 D DG 9 1_555 E DC 2 1_555 D DG 10 1_555 E DC 1 1_555 -0.409 0.149 3.295 0.185 -1.357 34.583 0.461 0.717 3.285 -2.282 -0.312 34.610 23 DD_DG523DG524:DC601DC602_EE D 523 ? E 602 ? D 524 ? E 601 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 6 GLYCEROL GOL 7 'MAGNESIUM ION' MG 8 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1G9Z _pdbx_initial_refinement_model.details 'PDB ENTRY 1G9Z' #