HEADER TRANSPORT PROTEIN 20-APR-12 4AQZ TITLE B2 DOMAIN OF NEISSERIA MENINGITIDIS PILUS ASSEMBLY PROTEIN PILQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV PILUS BIOGENESIS AND COMPETENCE PROTEIN PILQ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: B2, RESIDUES 224-329; COMPND 5 SYNONYM: PILQ; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE21); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS TRANSPORT PROTEIN, SECRETIN, TYPE IV PILI, TYPE II SECRETION SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.M.PHELAN,J.L.BERRY,J.P.DERRICK,L.Y.LIAN REVDAT 1 17-OCT-12 4AQZ 0 JRNL AUTH J.L.BERRY,M.M.PHELAN,R.F.COLLINS,T.ADOMAVICIUS,T.TONJUM, JRNL AUTH 2 S.A.FRYE,L.BIRD,R.OWENS,R.C.FORD,L.Y.LIAN,J.P.DERRICK JRNL TITL STRUCTURE AND ASSEMBLY OF A TRANS-PERIPLASMIC CHANNEL FOR JRNL TITL 2 TYPE IV PILI IN NEISSERIA MENINGITIDIS. JRNL REF PLOS PATHOG. V. 8 2923 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 23028322 JRNL DOI 10.1371/JOURNAL.PPAT.1002923 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA2.1 REMARK 3 AUTHORS : LOPEZ ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-12. REMARK 100 THE PDBE ID CODE IS EBI-52135. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH, 3D HNCACB, REMARK 210 3D HN(CA)CO 3D HNCO, 2D 1H- REMARK 210 15N HSQC, 3D HBHA(CO)NH, REMARK 210 3D HBHANH, 3D HNCACB, 2D REMARK 210 HBCBCGCDHD, 2D ALI 1H-13C REMARK 210 HSQC, 2D ARO 1H-13C HSQC, REMARK 210 3D ALI HC-NOESY, 3D ARO HC- REMARK 210 NOESY, 3D HN-NOESY ; 3D REMARK 210 ALI HCCH-TOCSY, 3D ARO REMARK 210 HCCH-TOCSY, REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE ; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER ; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN2.1, CCPN ANALYSIS, REMARK 210 CYANA2.1, CNS1.2, REMARK 210 TALOSPLUS REMARK 210 METHOD USED : CYANA2.1 AND CNS1.2 WATER REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REPRESENTATIVE STRUCTURE SELECTED AS CLOSEST-TO- REMARK 210 MEAN FOR THE ENSEMBLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 194 -82.94 -94.47 REMARK 500 1 HIS A 196 -164.01 63.68 REMARK 500 1 ARG A 206 34.84 -143.74 REMARK 500 1 ALA A 211 -27.77 -177.07 REMARK 500 1 MET A 219 -55.55 -179.07 REMARK 500 1 ARG A 221 -46.10 -130.15 REMARK 500 1 LYS A 224 -79.24 -128.15 REMARK 500 1 VAL A 279 25.62 46.19 REMARK 500 1 PRO A 317 95.99 -65.17 REMARK 500 2 HIS A 197 -67.00 -142.45 REMARK 500 2 HIS A 198 170.06 74.86 REMARK 500 2 ALA A 211 170.55 70.42 REMARK 500 2 LYS A 288 135.23 -170.21 REMARK 500 3 SER A 195 -41.36 -174.46 REMARK 500 3 HIS A 197 70.69 58.60 REMARK 500 3 ALA A 211 103.44 70.74 REMARK 500 3 SER A 212 86.79 67.68 REMARK 500 3 THR A 214 9.31 -151.68 REMARK 500 3 GLN A 217 -70.52 -104.44 REMARK 500 3 VAL A 279 36.69 -89.63 REMARK 500 4 HIS A 198 20.18 -155.60 REMARK 500 4 HIS A 201 -53.85 -121.47 REMARK 500 4 MET A 210 148.28 74.39 REMARK 500 4 SER A 212 40.09 -108.43 REMARK 500 4 THR A 214 31.28 -91.35 REMARK 500 4 ARG A 221 3.00 -162.24 REMARK 500 4 GLN A 225 173.89 69.40 REMARK 500 4 VAL A 279 18.32 49.78 REMARK 500 4 ASN A 295 -74.54 -46.64 REMARK 500 5 HIS A 198 80.97 63.15 REMARK 500 5 HIS A 200 -163.71 64.18 REMARK 500 5 HIS A 201 -72.76 -154.18 REMARK 500 5 MET A 210 104.73 -178.60 REMARK 500 5 THR A 214 -60.72 65.63 REMARK 500 5 GLN A 218 -55.97 -144.06 REMARK 500 5 PRO A 317 96.97 -65.24 REMARK 500 6 HIS A 197 88.71 -151.25 REMARK 500 6 LEU A 203 159.37 72.49 REMARK 500 6 ARG A 206 -17.29 78.15 REMARK 500 6 MET A 210 107.13 70.81 REMARK 500 6 MET A 213 95.48 -66.76 REMARK 500 6 LYS A 224 -48.14 -146.24 REMARK 500 7 HIS A 197 -37.60 -167.67 REMARK 500 7 HIS A 201 108.34 71.36 REMARK 500 7 MET A 210 129.49 170.55 REMARK 500 7 ALA A 211 98.21 67.14 REMARK 500 7 MET A 219 123.11 64.24 REMARK 500 7 VAL A 279 26.74 42.65 REMARK 500 7 ASN A 295 -70.35 -24.02 REMARK 500 7 PRO A 317 97.60 -64.64 REMARK 500 REMARK 500 THIS ENTRY HAS 141 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 231 0.09 SIDE CHAIN REMARK 500 4 ARG A 293 0.07 SIDE CHAIN REMARK 500 18 ARG A 231 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 7 VAL A 279 24.0 L L OUTSIDE RANGE REMARK 500 10 ASP A 281 24.2 L L OUTSIDE RANGE REMARK 500 20 VAL A 279 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AR0 RELATED DB: PDB REMARK 900 N0 DOMAIN OF NEISSERIA MENINGITIDIS PILUS ASSEMBLY REMARK 900 PROTEIN PILQ DBREF 4AQZ A 224 329 UNP Q70M91 PILQ_NEIMB 224 329 SEQADV 4AQZ MET A 192 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 193 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ SER A 194 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ SER A 195 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 196 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 197 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 198 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 199 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 200 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 201 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 202 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ LEU A 203 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ VAL A 204 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ PRO A 205 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ ARG A 206 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 207 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ SER A 208 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ HIS A 209 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ MET A 210 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ ALA A 211 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ SER A 212 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ MET A 213 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ THR A 214 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 215 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 216 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLN A 217 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLN A 218 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ MET A 219 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 220 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ ARG A 221 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ GLY A 222 UNP Q70M91 EXPRESSION TAG SEQADV 4AQZ SER A 223 UNP Q70M91 EXPRESSION TAG SEQRES 1 A 138 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 138 PRO ARG GLY SER HIS MET ALA SER MET THR GLY GLY GLN SEQRES 3 A 138 GLN MET GLY ARG GLY SER LYS GLN THR ASN ILE ASP PHE SEQRES 4 A 138 ARG LYS ASP GLY LYS ASN ALA GLY ILE ILE GLU LEU ALA SEQRES 5 A 138 ALA LEU GLY PHE ALA GLY GLN PRO ASP ILE SER GLN GLN SEQRES 6 A 138 HIS ASP HIS ILE ILE VAL THR LEU LYS ASN HIS THR LEU SEQRES 7 A 138 PRO THR THR LEU GLN ARG SER LEU ASP VAL ALA ASP PHE SEQRES 8 A 138 LYS THR PRO VAL GLN LYS VAL THR LEU LYS ARG LEU ASN SEQRES 9 A 138 ASN ASP THR GLN LEU ILE ILE THR THR ALA GLY ASN TRP SEQRES 10 A 138 GLU LEU VAL ASN LYS SER ALA ALA PRO GLY TYR PHE THR SEQRES 11 A 138 PHE GLN VAL LEU PRO LYS LYS GLN SHEET 1 AA 4 ASN A 227 ASP A 233 0 SHEET 2 AA 4 ALA A 237 ALA A 243 -1 O ALA A 237 N ASP A 233 SHEET 3 AA 4 TYR A 319 PRO A 326 -1 O PHE A 320 N LEU A 242 SHEET 4 AA 4 TRP A 308 ALA A 316 -1 O GLU A 309 N LEU A 325 SHEET 1 AB 5 ASP A 252 GLN A 255 0 SHEET 2 AB 5 HIS A 259 LEU A 264 -1 O ILE A 261 N SER A 254 SHEET 3 AB 5 THR A 298 THR A 304 -1 O THR A 298 N LEU A 264 SHEET 4 AB 5 VAL A 286 ARG A 293 -1 N GLN A 287 O THR A 303 SHEET 5 AB 5 SER A 276 LEU A 277 -1 O LEU A 277 N VAL A 289 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1