HEADER TRANSPORT 20-APR-12 4AR0 TITLE N0 DOMAIN OF NEISSERIA MENINGITIDIS PILUS ASSEMBLY PROTEIN PILQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV PILUS BIOGENESIS AND COMPETENCE PROTEIN PILQ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 343-442; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM11 KEYWDS TRANSPORT, SECRETIN TYPE II SECRETION SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.M.PHELAN,J.L.BERRY,J.P.DERRICK,L.Y.LIAN REVDAT 2 30-NOV-16 4AR0 1 ATOM REVDAT 1 17-OCT-12 4AR0 0 JRNL AUTH J.L.BERRY,M.M.PHELAN,R.F.COLLINS,T.ADOMAVICIUS,T.TONJUM, JRNL AUTH 2 S.A.FRYE,L.BIRD,R.OWENS,R.C.FORD,L.Y.LIAN,J.P.DERRICK JRNL TITL STRUCTURE AND ASSEMBLY OF A TRANS-PERIPLASMIC CHANNEL FOR JRNL TITL 2 TYPE IV PILI IN NEISSERIA MENINGITIDIS. JRNL REF PLOS PATHOG. V. 8 2923 2012 JRNL REFN ISSN 1553-7366 JRNL PMID 23028322 JRNL DOI 10.1371/JOURNAL.PPAT.1002923 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA2.1 REMARK 3 AUTHORS : LOPEZ ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-APR-12. REMARK 100 THE PDBE ID CODE IS EBI-52048. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 100 MM; 100 MM REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D HN(CA)CO 3D HNCO; 2D 1H- REMARK 210 15N HSQC; 3D HBHA(CO)NH; REMARK 210 3D HBHANH; 3D HNCACB; 2D REMARK 210 HBCBCGCDHD; 2D ALI 1H-13C REMARK 210 HSQC; 2D ARO 1H-13C HSQC; REMARK 210 3D ALI HC-NOESY; 3D ARO HC- REMARK 210 NOESY; 3D HN-NOESY; 3D REMARK 210 ALI HCCH-TOCSY; 3D ARO REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN2.1, CCPN ANALYSIS, REMARK 210 CYANA2.1, CNS1.2, TALOSPLUS REMARK 210 METHOD USED : CYANA2.1 AND CNS1.2 WATER REMARK 210 REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REPRESENTATIVE STRUCTURE SELECTED AS CLOSEST-TO- REMARK 210 MEAN FOR THE ENSEMBLE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 318 -41.89 -167.80 REMARK 500 1 HIS A 322 73.63 58.07 REMARK 500 1 ASP A 326 -81.33 -98.02 REMARK 500 1 ILE A 329 122.51 74.10 REMARK 500 1 LEU A 335 33.95 -88.08 REMARK 500 1 TYR A 336 75.69 70.22 REMARK 500 1 PHE A 337 67.64 -102.35 REMARK 500 1 MET A 341 -82.21 -123.98 REMARK 500 1 PHE A 343 -165.31 -123.80 REMARK 500 1 MET A 370 -162.83 62.81 REMARK 500 1 ASN A 403 92.89 48.81 REMARK 500 2 MET A 341 76.74 -106.43 REMARK 500 2 LEU A 350 119.93 -161.54 REMARK 500 2 MET A 370 -166.68 53.45 REMARK 500 2 SER A 375 -150.82 -80.90 REMARK 500 2 ASP A 388 37.88 -150.02 REMARK 500 2 ASN A 403 95.29 56.22 REMARK 500 2 ALA A 431 96.96 70.33 REMARK 500 2 ALA A 436 -83.91 -164.66 REMARK 500 2 ASP A 437 107.27 166.89 REMARK 500 3 HIS A 317 -179.33 63.82 REMARK 500 3 PRO A 323 104.88 -46.49 REMARK 500 3 GLU A 333 77.57 58.06 REMARK 500 3 TYR A 336 92.04 62.92 REMARK 500 3 MET A 370 -157.68 51.11 REMARK 500 3 LYS A 387 -76.91 -97.63 REMARK 500 3 ASN A 403 95.59 57.87 REMARK 500 3 LEU A 429 51.97 -95.06 REMARK 500 3 ILE A 435 83.14 69.38 REMARK 500 3 LEU A 438 77.38 63.96 REMARK 500 4 TYR A 327 -64.52 -94.30 REMARK 500 4 ASP A 328 20.79 -142.59 REMARK 500 4 MET A 370 -159.70 52.08 REMARK 500 4 ASN A 403 93.71 55.69 REMARK 500 4 GLU A 432 74.20 63.34 REMARK 500 4 ILE A 435 80.56 51.52 REMARK 500 5 HIS A 318 71.27 48.48 REMARK 500 5 HIS A 319 -66.08 -139.24 REMARK 500 5 HIS A 322 98.72 162.18 REMARK 500 5 SER A 325 68.73 64.45 REMARK 500 5 GLU A 338 105.69 70.52 REMARK 500 5 GLU A 367 30.04 -89.06 REMARK 500 5 MET A 370 -164.19 59.90 REMARK 500 5 ASP A 388 85.87 -170.74 REMARK 500 5 ARG A 402 7.31 -150.20 REMARK 500 5 ASN A 403 95.41 53.55 REMARK 500 5 PHE A 428 81.42 60.28 REMARK 500 5 GLN A 430 44.71 -89.73 REMARK 500 6 HIS A 318 176.99 67.48 REMARK 500 6 HIS A 320 -75.67 -117.20 REMARK 500 REMARK 500 THIS ENTRY HAS 245 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 ARG A 402 0.08 SIDE CHAIN REMARK 500 12 ARG A 407 0.07 SIDE CHAIN REMARK 500 13 ARG A 358 0.08 SIDE CHAIN REMARK 500 20 ARG A 402 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 16 GLU A 367 24.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AQZ RELATED DB: PDB REMARK 900 B2 DOMAIN OF NEISSERIA MENINGITIDIS PILUS ASSEMBLY REMARK 900 PROTEIN PILQ DBREF 4AR0 A 343 442 UNP Q70M91 PILQ_NEIMB 343 442 SEQADV 4AR0 MET A 315 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 LYS A 316 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 HIS A 317 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 HIS A 318 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 HIS A 319 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 HIS A 320 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 HIS A 321 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 HIS A 322 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 PRO A 323 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 MET A 324 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 SER A 325 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 ASP A 326 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 TYR A 327 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 ASP A 328 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 ILE A 329 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 PRO A 330 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 THR A 331 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 THR A 332 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 GLU A 333 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 ASN A 334 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 LEU A 335 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 TYR A 336 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 PHE A 337 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 GLU A 338 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 GLY A 339 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 ALA A 340 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 MET A 341 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 GLY A 342 UNP Q70M91 EXPRESSION TAG SEQADV 4AR0 PHE A 428 UNP Q70M91 LEU 428 VARIANT SEQRES 1 A 128 MET LYS HIS HIS HIS HIS HIS HIS PRO MET SER ASP TYR SEQRES 2 A 128 ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLU GLY ALA SEQRES 3 A 128 MET GLY PHE THR GLY ARG LYS ILE SER LEU ASP PHE GLN SEQRES 4 A 128 ASP VAL GLU ILE ARG THR ILE LEU GLN ILE LEU ALA LYS SEQRES 5 A 128 GLU SER GLY MET ASN ILE VAL ALA SER ASP SER VAL ASN SEQRES 6 A 128 GLY LYS MET THR LEU SER LEU LYS ASP VAL PRO TRP ASP SEQRES 7 A 128 GLN ALA LEU ASP LEU VAL MET GLN ALA ARG ASN LEU ASP SEQRES 8 A 128 MET ARG GLN GLN GLY ASN ILE VAL ASN ILE ALA PRO ARG SEQRES 9 A 128 ASP GLU LEU LEU ALA LYS ASP LYS ALA PHE LEU GLN ALA SEQRES 10 A 128 GLU LYS ASP ILE ALA ASP LEU GLY ALA LEU TYR HELIX 1 1 ILE A 357 GLU A 367 1 11 HELIX 2 2 TRP A 391 ARG A 402 1 12 HELIX 3 3 ARG A 418 ALA A 427 1 10 SHEET 1 AA 2 LYS A 347 GLU A 356 0 SHEET 2 AA 2 LYS A 381 PRO A 390 -1 O MET A 382 N VAL A 355 SHEET 1 AB 3 ASN A 371 ALA A 374 0 SHEET 2 AB 3 ILE A 412 PRO A 417 1 O VAL A 413 N VAL A 373 SHEET 3 AB 3 LEU A 404 GLN A 409 -1 O ASP A 405 N ALA A 416 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1