data_4ARG # _entry.id 4ARG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ARG pdb_00004arg 10.2210/pdb4arg/pdb PDBE EBI-52176 ? ? WWPDB D_1290052176 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-30 2 'Structure model' 1 1 2012-08-01 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' em_software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' em_3d_fitting_list 6 4 'Structure model' pdbx_initial_refinement_model 7 4 'Structure model' struct_ref_seq # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_em_software.fitting_id' 2 3 'Structure model' '_em_software.image_processing_id' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_em_3d_fitting_list.accession_code' 6 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 7 4 'Structure model' '_em_3d_fitting_list.source_name' 8 4 'Structure model' '_em_3d_fitting_list.type' 9 4 'Structure model' '_struct_ref_seq.db_align_beg' 10 4 'Structure model' '_struct_ref_seq.db_align_end' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ARG _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-04-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4ARD unspecified 'STRUCTURE OF THE IMMATURE RETROVIRAL CAPSID AT 8A RESOLUTION BY CRYO-ELECTRON MICROSCOPY' EMDB EMD-2089 'associated EM volume' 'STRUCTURE OF THE IMMATURE RETROVIRAL CAPSID AT 8A RESOLUTION BY CRYO-ELECTRON MICROSCOPY' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bharat, T.A.M.' 1 'Davey, N.E.' 2 'Ulbrich, P.' 3 'Riches, J.D.' 4 'Marco, A.D.' 5 'Rumlova, M.' 6 'Sachse, C.' 7 'Ruml, T.' 8 'Briggs, J.A.G.' 9 # _citation.id primary _citation.title 'Structure of the Immature Retroviral Capsid at 8A Resolution by Cryo-Electron Microscopy.' _citation.journal_abbrev Nature _citation.journal_volume 487 _citation.page_first 385 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22722831 _citation.pdbx_database_id_DOI 10.1038/NATURE11169 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bharat, T.A.M.' 1 ? primary 'Davey, N.E.' 2 ? primary 'Ulbrich, P.' 3 ? primary 'Riches, J.D.' 4 ? primary 'Marco, A.D.' 5 ? primary 'Rumlova, M.' 6 ? primary 'Sachse, C.' 7 ? primary 'Ruml, T.' 8 ? primary 'Briggs, J.A.G.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'M-PMV DPRO CANC PROTEIN' 14371.477 2 ? ? 'M-PMV CA-NTD DIMER, RESIDUES 149-277' ? 2 polymer man 'M-PMV DPRO CANC PROTEIN' 7737.796 2 ? ? 'M-PMV CA-NTD DIMER, RESIDUES 283-351' ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQM REPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMY ; ;PRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQM REPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMY ; A,C ? 2 'polypeptide(L)' no no LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQ LDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLEEMMTACQ B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ARG n 1 3 THR n 1 4 LEU n 1 5 ASN n 1 6 ALA n 1 7 TRP n 1 8 VAL n 1 9 LYS n 1 10 VAL n 1 11 VAL n 1 12 GLU n 1 13 GLU n 1 14 LYS n 1 15 ALA n 1 16 PHE n 1 17 SER n 1 18 PRO n 1 19 GLU n 1 20 VAL n 1 21 ILE n 1 22 PRO n 1 23 MET n 1 24 PHE n 1 25 SER n 1 26 ALA n 1 27 LEU n 1 28 SER n 1 29 GLU n 1 30 GLY n 1 31 ALA n 1 32 THR n 1 33 PRO n 1 34 GLN n 1 35 ASP n 1 36 LEU n 1 37 ASN n 1 38 THR n 1 39 MET n 1 40 LEU n 1 41 ASN n 1 42 THR n 1 43 VAL n 1 44 GLY n 1 45 GLY n 1 46 HIS n 1 47 GLN n 1 48 ALA n 1 49 ALA n 1 50 MET n 1 51 GLN n 1 52 MET n 1 53 LEU n 1 54 LYS n 1 55 GLU n 1 56 THR n 1 57 ILE n 1 58 ASN n 1 59 GLU n 1 60 GLU n 1 61 ALA n 1 62 ALA n 1 63 GLU n 1 64 TRP n 1 65 ASP n 1 66 ARG n 1 67 LEU n 1 68 HIS n 1 69 PRO n 1 70 VAL n 1 71 HIS n 1 72 ALA n 1 73 GLY n 1 74 PRO n 1 75 ILE n 1 76 ALA n 1 77 PRO n 1 78 GLY n 1 79 GLN n 1 80 MET n 1 81 ARG n 1 82 GLU n 1 83 PRO n 1 84 ARG n 1 85 GLY n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 ALA n 1 90 GLY n 1 91 THR n 1 92 THR n 1 93 SER n 1 94 THR n 1 95 LEU n 1 96 GLN n 1 97 GLU n 1 98 GLN n 1 99 ILE n 1 100 GLY n 1 101 TRP n 1 102 MET n 1 103 THR n 1 104 HIS n 1 105 ASN n 1 106 PRO n 1 107 PRO n 1 108 ILE n 1 109 PRO n 1 110 VAL n 1 111 GLY n 1 112 GLU n 1 113 ILE n 1 114 TYR n 1 115 LYS n 1 116 ARG n 1 117 TRP n 1 118 ILE n 1 119 ILE n 1 120 LEU n 1 121 GLY n 1 122 LEU n 1 123 ASN n 1 124 LYS n 1 125 ILE n 1 126 VAL n 1 127 ARG n 1 128 MET n 1 129 TYR n 2 1 LEU n 2 2 ASP n 2 3 ILE n 2 4 ARG n 2 5 GLN n 2 6 GLY n 2 7 PRO n 2 8 LYS n 2 9 GLU n 2 10 PRO n 2 11 PHE n 2 12 ARG n 2 13 ASP n 2 14 TYR n 2 15 VAL n 2 16 ASP n 2 17 ARG n 2 18 PHE n 2 19 TYR n 2 20 LYS n 2 21 THR n 2 22 LEU n 2 23 ARG n 2 24 ALA n 2 25 GLU n 2 26 GLN n 2 27 ALA n 2 28 SER n 2 29 GLN n 2 30 GLU n 2 31 VAL n 2 32 LYS n 2 33 ASN n 2 34 ALA n 2 35 ALA n 2 36 THR n 2 37 GLU n 2 38 THR n 2 39 LEU n 2 40 LEU n 2 41 VAL n 2 42 GLN n 2 43 ASN n 2 44 ALA n 2 45 ASN n 2 46 PRO n 2 47 ASP n 2 48 CYS n 2 49 LYS n 2 50 THR n 2 51 ILE n 2 52 LEU n 2 53 LYS n 2 54 ALA n 2 55 LEU n 2 56 GLY n 2 57 PRO n 2 58 GLY n 2 59 ALA n 2 60 THR n 2 61 LEU n 2 62 GLU n 2 63 GLU n 2 64 MET n 2 65 MET n 2 66 THR n 2 67 ALA n 2 68 CYS n 2 69 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'MASON-PFIZER MONKEY VIRUS' 11855 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'MASON-PFIZER MONKEY VIRUS' 11855 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 TRP 7 7 7 TRP TRP A . n A 1 8 VAL 8 8 8 VAL VAL A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 MET 50 50 50 MET MET A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 PRO 69 69 ? ? ? A . n A 1 70 VAL 70 70 ? ? ? A . n A 1 71 HIS 71 71 ? ? ? A . n A 1 72 ALA 72 72 ? ? ? A . n A 1 73 GLY 73 73 ? ? ? A . n A 1 74 PRO 74 74 ? ? ? A . n A 1 75 ILE 75 75 ? ? ? A . n A 1 76 ALA 76 76 ? ? ? A . n A 1 77 PRO 77 77 ? ? ? A . n A 1 78 GLY 78 78 ? ? ? A . n A 1 79 GLN 79 79 ? ? ? A . n A 1 80 MET 80 80 ? ? ? A . n A 1 81 ARG 81 81 ? ? ? A . n A 1 82 GLU 82 82 ? ? ? A . n A 1 83 PRO 83 83 ? ? ? A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 GLN 96 96 96 GLN GLN A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 MET 102 102 102 MET MET A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 HIS 104 104 104 HIS HIS A . n A 1 105 ASN 105 105 105 ASN ASN A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 TRP 117 117 117 TRP TRP A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 LEU 120 120 120 LEU LEU A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 MET 128 128 128 MET MET A . n A 1 129 TYR 129 129 129 TYR TYR A . n B 2 1 LEU 1 135 135 LEU LEU B . n B 2 2 ASP 2 136 136 ASP ASP B . n B 2 3 ILE 3 137 137 ILE ILE B . n B 2 4 ARG 4 138 138 ARG ARG B . n B 2 5 GLN 5 139 139 GLN GLN B . n B 2 6 GLY 6 140 140 GLY GLY B . n B 2 7 PRO 7 141 141 PRO PRO B . n B 2 8 LYS 8 142 142 LYS LYS B . n B 2 9 GLU 9 143 143 GLU GLU B . n B 2 10 PRO 10 144 144 PRO PRO B . n B 2 11 PHE 11 145 145 PHE PHE B . n B 2 12 ARG 12 146 146 ARG ARG B . n B 2 13 ASP 13 147 147 ASP ASP B . n B 2 14 TYR 14 148 148 TYR TYR B . n B 2 15 VAL 15 149 149 VAL VAL B . n B 2 16 ASP 16 150 150 ASP ASP B . n B 2 17 ARG 17 151 151 ARG ARG B . n B 2 18 PHE 18 152 152 PHE PHE B . n B 2 19 TYR 19 153 153 TYR TYR B . n B 2 20 LYS 20 154 154 LYS LYS B . n B 2 21 THR 21 155 155 THR THR B . n B 2 22 LEU 22 156 156 LEU LEU B . n B 2 23 ARG 23 157 157 ARG ARG B . n B 2 24 ALA 24 158 158 ALA ALA B . n B 2 25 GLU 25 159 159 GLU GLU B . n B 2 26 GLN 26 160 160 GLN GLN B . n B 2 27 ALA 27 161 161 ALA ALA B . n B 2 28 SER 28 162 162 SER SER B . n B 2 29 GLN 29 163 163 GLN GLN B . n B 2 30 GLU 30 164 164 GLU GLU B . n B 2 31 VAL 31 165 165 VAL VAL B . n B 2 32 LYS 32 166 166 LYS LYS B . n B 2 33 ASN 33 167 167 ASN ASN B . n B 2 34 ALA 34 168 168 ALA ALA B . n B 2 35 ALA 35 169 169 ALA ALA B . n B 2 36 THR 36 170 170 THR THR B . n B 2 37 GLU 37 171 171 GLU GLU B . n B 2 38 THR 38 172 172 THR THR B . n B 2 39 LEU 39 173 173 LEU LEU B . n B 2 40 LEU 40 174 174 LEU LEU B . n B 2 41 VAL 41 175 175 VAL VAL B . n B 2 42 GLN 42 176 176 GLN GLN B . n B 2 43 ASN 43 177 177 ASN ASN B . n B 2 44 ALA 44 178 178 ALA ALA B . n B 2 45 ASN 45 179 179 ASN ASN B . n B 2 46 PRO 46 180 180 PRO PRO B . n B 2 47 ASP 47 181 181 ASP ASP B . n B 2 48 CYS 48 182 182 CYS CYS B . n B 2 49 LYS 49 183 183 LYS LYS B . n B 2 50 THR 50 184 184 THR THR B . n B 2 51 ILE 51 185 185 ILE ILE B . n B 2 52 LEU 52 186 186 LEU LEU B . n B 2 53 LYS 53 187 187 LYS LYS B . n B 2 54 ALA 54 188 188 ALA ALA B . n B 2 55 LEU 55 189 189 LEU LEU B . n B 2 56 GLY 56 190 190 GLY GLY B . n B 2 57 PRO 57 191 191 PRO PRO B . n B 2 58 GLY 58 192 192 GLY GLY B . n B 2 59 ALA 59 193 193 ALA ALA B . n B 2 60 THR 60 194 194 THR THR B . n B 2 61 LEU 61 195 195 LEU LEU B . n B 2 62 GLU 62 196 196 GLU GLU B . n B 2 63 GLU 63 197 197 GLU GLU B . n B 2 64 MET 64 198 198 MET MET B . n B 2 65 MET 65 199 199 MET MET B . n B 2 66 THR 66 200 200 THR THR B . n B 2 67 ALA 67 201 201 ALA ALA B . n B 2 68 CYS 68 202 202 CYS CYS B . n B 2 69 GLN 69 203 203 GLN GLN B . n C 1 1 PRO 1 1 1 PRO PRO C . n C 1 2 ARG 2 2 2 ARG ARG C . n C 1 3 THR 3 3 3 THR THR C . n C 1 4 LEU 4 4 4 LEU LEU C . n C 1 5 ASN 5 5 5 ASN ASN C . n C 1 6 ALA 6 6 6 ALA ALA C . n C 1 7 TRP 7 7 7 TRP TRP C . n C 1 8 VAL 8 8 8 VAL VAL C . n C 1 9 LYS 9 9 9 LYS LYS C . n C 1 10 VAL 10 10 10 VAL VAL C . n C 1 11 VAL 11 11 11 VAL VAL C . n C 1 12 GLU 12 12 12 GLU GLU C . n C 1 13 GLU 13 13 13 GLU GLU C . n C 1 14 LYS 14 14 14 LYS LYS C . n C 1 15 ALA 15 15 15 ALA ALA C . n C 1 16 PHE 16 16 16 PHE PHE C . n C 1 17 SER 17 17 17 SER SER C . n C 1 18 PRO 18 18 18 PRO PRO C . n C 1 19 GLU 19 19 19 GLU GLU C . n C 1 20 VAL 20 20 20 VAL VAL C . n C 1 21 ILE 21 21 21 ILE ILE C . n C 1 22 PRO 22 22 22 PRO PRO C . n C 1 23 MET 23 23 23 MET MET C . n C 1 24 PHE 24 24 24 PHE PHE C . n C 1 25 SER 25 25 25 SER SER C . n C 1 26 ALA 26 26 26 ALA ALA C . n C 1 27 LEU 27 27 27 LEU LEU C . n C 1 28 SER 28 28 28 SER SER C . n C 1 29 GLU 29 29 29 GLU GLU C . n C 1 30 GLY 30 30 30 GLY GLY C . n C 1 31 ALA 31 31 31 ALA ALA C . n C 1 32 THR 32 32 32 THR THR C . n C 1 33 PRO 33 33 33 PRO PRO C . n C 1 34 GLN 34 34 34 GLN GLN C . n C 1 35 ASP 35 35 35 ASP ASP C . n C 1 36 LEU 36 36 36 LEU LEU C . n C 1 37 ASN 37 37 37 ASN ASN C . n C 1 38 THR 38 38 38 THR THR C . n C 1 39 MET 39 39 39 MET MET C . n C 1 40 LEU 40 40 40 LEU LEU C . n C 1 41 ASN 41 41 41 ASN ASN C . n C 1 42 THR 42 42 42 THR THR C . n C 1 43 VAL 43 43 43 VAL VAL C . n C 1 44 GLY 44 44 44 GLY GLY C . n C 1 45 GLY 45 45 45 GLY GLY C . n C 1 46 HIS 46 46 46 HIS HIS C . n C 1 47 GLN 47 47 47 GLN GLN C . n C 1 48 ALA 48 48 48 ALA ALA C . n C 1 49 ALA 49 49 49 ALA ALA C . n C 1 50 MET 50 50 50 MET MET C . n C 1 51 GLN 51 51 51 GLN GLN C . n C 1 52 MET 52 52 52 MET MET C . n C 1 53 LEU 53 53 53 LEU LEU C . n C 1 54 LYS 54 54 54 LYS LYS C . n C 1 55 GLU 55 55 55 GLU GLU C . n C 1 56 THR 56 56 56 THR THR C . n C 1 57 ILE 57 57 57 ILE ILE C . n C 1 58 ASN 58 58 58 ASN ASN C . n C 1 59 GLU 59 59 59 GLU GLU C . n C 1 60 GLU 60 60 60 GLU GLU C . n C 1 61 ALA 61 61 61 ALA ALA C . n C 1 62 ALA 62 62 62 ALA ALA C . n C 1 63 GLU 63 63 63 GLU GLU C . n C 1 64 TRP 64 64 64 TRP TRP C . n C 1 65 ASP 65 65 65 ASP ASP C . n C 1 66 ARG 66 66 66 ARG ARG C . n C 1 67 LEU 67 67 67 LEU LEU C . n C 1 68 HIS 68 68 68 HIS HIS C . n C 1 69 PRO 69 69 ? ? ? C . n C 1 70 VAL 70 70 ? ? ? C . n C 1 71 HIS 71 71 ? ? ? C . n C 1 72 ALA 72 72 ? ? ? C . n C 1 73 GLY 73 73 ? ? ? C . n C 1 74 PRO 74 74 ? ? ? C . n C 1 75 ILE 75 75 ? ? ? C . n C 1 76 ALA 76 76 ? ? ? C . n C 1 77 PRO 77 77 ? ? ? C . n C 1 78 GLY 78 78 ? ? ? C . n C 1 79 GLN 79 79 ? ? ? C . n C 1 80 MET 80 80 ? ? ? C . n C 1 81 ARG 81 81 ? ? ? C . n C 1 82 GLU 82 82 ? ? ? C . n C 1 83 PRO 83 83 ? ? ? C . n C 1 84 ARG 84 84 84 ARG ARG C . n C 1 85 GLY 85 85 85 GLY GLY C . n C 1 86 SER 86 86 86 SER SER C . n C 1 87 ASP 87 87 87 ASP ASP C . n C 1 88 ILE 88 88 88 ILE ILE C . n C 1 89 ALA 89 89 89 ALA ALA C . n C 1 90 GLY 90 90 90 GLY GLY C . n C 1 91 THR 91 91 91 THR THR C . n C 1 92 THR 92 92 92 THR THR C . n C 1 93 SER 93 93 93 SER SER C . n C 1 94 THR 94 94 94 THR THR C . n C 1 95 LEU 95 95 95 LEU LEU C . n C 1 96 GLN 96 96 96 GLN GLN C . n C 1 97 GLU 97 97 97 GLU GLU C . n C 1 98 GLN 98 98 98 GLN GLN C . n C 1 99 ILE 99 99 99 ILE ILE C . n C 1 100 GLY 100 100 100 GLY GLY C . n C 1 101 TRP 101 101 101 TRP TRP C . n C 1 102 MET 102 102 102 MET MET C . n C 1 103 THR 103 103 103 THR THR C . n C 1 104 HIS 104 104 104 HIS HIS C . n C 1 105 ASN 105 105 105 ASN ASN C . n C 1 106 PRO 106 106 106 PRO PRO C . n C 1 107 PRO 107 107 107 PRO PRO C . n C 1 108 ILE 108 108 108 ILE ILE C . n C 1 109 PRO 109 109 109 PRO PRO C . n C 1 110 VAL 110 110 110 VAL VAL C . n C 1 111 GLY 111 111 111 GLY GLY C . n C 1 112 GLU 112 112 112 GLU GLU C . n C 1 113 ILE 113 113 113 ILE ILE C . n C 1 114 TYR 114 114 114 TYR TYR C . n C 1 115 LYS 115 115 115 LYS LYS C . n C 1 116 ARG 116 116 116 ARG ARG C . n C 1 117 TRP 117 117 117 TRP TRP C . n C 1 118 ILE 118 118 118 ILE ILE C . n C 1 119 ILE 119 119 119 ILE ILE C . n C 1 120 LEU 120 120 120 LEU LEU C . n C 1 121 GLY 121 121 121 GLY GLY C . n C 1 122 LEU 122 122 122 LEU LEU C . n C 1 123 ASN 123 123 123 ASN ASN C . n C 1 124 LYS 124 124 124 LYS LYS C . n C 1 125 ILE 125 125 125 ILE ILE C . n C 1 126 VAL 126 126 126 VAL VAL C . n C 1 127 ARG 127 127 127 ARG ARG C . n C 1 128 MET 128 128 128 MET MET C . n C 1 129 TYR 129 129 129 TYR TYR C . n D 2 1 LEU 1 135 135 LEU LEU D . n D 2 2 ASP 2 136 136 ASP ASP D . n D 2 3 ILE 3 137 137 ILE ILE D . n D 2 4 ARG 4 138 138 ARG ARG D . n D 2 5 GLN 5 139 139 GLN GLN D . n D 2 6 GLY 6 140 140 GLY GLY D . n D 2 7 PRO 7 141 141 PRO PRO D . n D 2 8 LYS 8 142 142 LYS LYS D . n D 2 9 GLU 9 143 143 GLU GLU D . n D 2 10 PRO 10 144 144 PRO PRO D . n D 2 11 PHE 11 145 145 PHE PHE D . n D 2 12 ARG 12 146 146 ARG ARG D . n D 2 13 ASP 13 147 147 ASP ASP D . n D 2 14 TYR 14 148 148 TYR TYR D . n D 2 15 VAL 15 149 149 VAL VAL D . n D 2 16 ASP 16 150 150 ASP ASP D . n D 2 17 ARG 17 151 151 ARG ARG D . n D 2 18 PHE 18 152 152 PHE PHE D . n D 2 19 TYR 19 153 153 TYR TYR D . n D 2 20 LYS 20 154 154 LYS LYS D . n D 2 21 THR 21 155 155 THR THR D . n D 2 22 LEU 22 156 156 LEU LEU D . n D 2 23 ARG 23 157 157 ARG ARG D . n D 2 24 ALA 24 158 158 ALA ALA D . n D 2 25 GLU 25 159 159 GLU GLU D . n D 2 26 GLN 26 160 160 GLN GLN D . n D 2 27 ALA 27 161 161 ALA ALA D . n D 2 28 SER 28 162 162 SER SER D . n D 2 29 GLN 29 163 163 GLN GLN D . n D 2 30 GLU 30 164 164 GLU GLU D . n D 2 31 VAL 31 165 165 VAL VAL D . n D 2 32 LYS 32 166 166 LYS LYS D . n D 2 33 ASN 33 167 167 ASN ASN D . n D 2 34 ALA 34 168 168 ALA ALA D . n D 2 35 ALA 35 169 169 ALA ALA D . n D 2 36 THR 36 170 170 THR THR D . n D 2 37 GLU 37 171 171 GLU GLU D . n D 2 38 THR 38 172 172 THR THR D . n D 2 39 LEU 39 173 173 LEU LEU D . n D 2 40 LEU 40 174 174 LEU LEU D . n D 2 41 VAL 41 175 175 VAL VAL D . n D 2 42 GLN 42 176 176 GLN GLN D . n D 2 43 ASN 43 177 177 ASN ASN D . n D 2 44 ALA 44 178 178 ALA ALA D . n D 2 45 ASN 45 179 179 ASN ASN D . n D 2 46 PRO 46 180 180 PRO PRO D . n D 2 47 ASP 47 181 181 ASP ASP D . n D 2 48 CYS 48 182 182 CYS CYS D . n D 2 49 LYS 49 183 183 LYS LYS D . n D 2 50 THR 50 184 184 THR THR D . n D 2 51 ILE 51 185 185 ILE ILE D . n D 2 52 LEU 52 186 186 LEU LEU D . n D 2 53 LYS 53 187 187 LYS LYS D . n D 2 54 ALA 54 188 188 ALA ALA D . n D 2 55 LEU 55 189 189 LEU LEU D . n D 2 56 GLY 56 190 190 GLY GLY D . n D 2 57 PRO 57 191 191 PRO PRO D . n D 2 58 GLY 58 192 192 GLY GLY D . n D 2 59 ALA 59 193 193 ALA ALA D . n D 2 60 THR 60 194 194 THR THR D . n D 2 61 LEU 61 195 195 LEU LEU D . n D 2 62 GLU 62 196 196 GLU GLU D . n D 2 63 GLU 63 197 197 GLU GLU D . n D 2 64 MET 64 198 198 MET MET D . n D 2 65 MET 65 199 199 MET MET D . n D 2 66 THR 66 200 200 THR THR D . n D 2 67 ALA 67 201 201 ALA ALA D . n D 2 68 CYS 68 202 202 CYS CYS D . n D 2 69 GLN 69 203 203 GLN GLN D . n # _cell.entry_id 4ARG _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 1.00 _cell.angle_beta 1.00 _cell.angle_gamma 1.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ARG _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 4ARG _exptl.method 'ELECTRON MICROSCOPY' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 4ARG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 7.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 366 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 366 _refine_hist.d_res_high 7.00 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 4ARG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4ARG _struct.title 'Structure of the immature retroviral capsid at 8A resolution by cryo- electron microscopy' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'CA ATOMS ONLY, CHAIN A, B, C, D' # _struct_keywords.entry_id 4ARG _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'VIRAL PROTEIN, RETROVIRUS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 4ARG 1 ? ? 4ARG ? 2 PDB 4ARG 2 ? ? 4ARG ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ARG A 1 ? 129 ? 4ARG 1 ? 129 ? 1 129 2 2 4ARG B 1 ? 69 ? 4ARG 135 ? 203 ? 135 203 3 1 4ARG C 1 ? 129 ? 4ARG 1 ? 129 ? 1 129 4 2 4ARG D 1 ? 69 ? 4ARG 135 ? 203 ? 135 203 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CA A ARG 84 ? ? CA C PRO 107 ? ? 2.02 2 1 CA A PRO 107 ? ? CA C ARG 84 ? ? 2.04 # _pdbx_entry_details.entry_id 4ARG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS ENTRY FITS THE STRUCTURE OF HIV (UNP Q72497) INTO THE ELCTRON DENSITY MAP OF MPMV (EM 2089). THE CYCLOPHILIN BINDING LOOP OF HIV-1 (PVHAGPIAPGQMREP) AND THE SEQUENCE OF RESIDUES (SPTSI) IN THE INTER-DOMAIN LINKER WERE NOT INCLUDED FOR THE FITTING. ; _pdbx_entry_details.has_ligand_of_interest ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 4ARG _em_3d_fitting.ref_protocol 'RIGID BODY FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details 'METHOD--RIGID BODY REFINEMENT PROTOCOL--NMR,XRAY' _em_3d_fitting.method ? # loop_ _em_3d_fitting_list.3d_fitting_id _em_3d_fitting_list.id _em_3d_fitting_list.pdb_entry_id _em_3d_fitting_list.pdb_chain_id _em_3d_fitting_list.details _em_3d_fitting_list.initial_refinement_model_id _em_3d_fitting_list.chain_id _em_3d_fitting_list.chain_residue_range _em_3d_fitting_list.pdb_chain_residue_range _em_3d_fitting_list.source_name _em_3d_fitting_list.type _em_3d_fitting_list.accession_code 1 1 1L6N ? ? 1 ? ? ? PDB 'experimental model' 1L6N 1 2 2KGF ? ? 2 ? ? ? PDB 'experimental model' 2KGF # _em_3d_reconstruction.entry_id 4ARG _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'REAL SPACE HELICAL RECONSTRUCTION WITH 3D ASYMMETRIC UNIT AVERAGING.' _em_3d_reconstruction.nominal_pixel_size 1.53 _em_3d_reconstruction.actual_pixel_size 1.53 _em_3d_reconstruction.resolution 7 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ;REAL SPACE HELICAL RECONSTRUCTION WITH 3D ASYMMETRIC UNIT AVERAGING. SUBMISSION BASED ON EXPERIMENTAL DATA FROM EMDB EMD-2089. (DEPOSITION ID: 10767). ; _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '100MM NACL, 50MM TRIS-HCL, 1UM ZN' _em_buffer.pH 7.7 _em_buffer.details '100MM NACL, 50MM TRIS-HCL, 1UM ZN' # _em_entity_assembly.id 1 _em_entity_assembly.name 'M-PMV CANC GAG TUBES' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 4ARG _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 46 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 4ARG _em_imaging.id 1 _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.specimen_id 1 _em_imaging.date 2011-07-05 _em_imaging.temperature ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 4000 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_cs 2.7 _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_magnification 47000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 300 _em_imaging.details ? _em_imaging.specimen_holder_type . _em_imaging.specimen_holder_model . _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'HOLEY CARBON' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? # _em_vitrification.entry_id 4ARG _em_vitrification.id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.specimen_id 1 _em_vitrification.details 'LIQUID ETHANE' _em_vitrification.citation_id ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 4ARG _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method HELICAL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 69 ? A PRO 69 2 1 Y 1 A VAL 70 ? A VAL 70 3 1 Y 1 A HIS 71 ? A HIS 71 4 1 Y 1 A ALA 72 ? A ALA 72 5 1 Y 1 A GLY 73 ? A GLY 73 6 1 Y 1 A PRO 74 ? A PRO 74 7 1 Y 1 A ILE 75 ? A ILE 75 8 1 Y 1 A ALA 76 ? A ALA 76 9 1 Y 1 A PRO 77 ? A PRO 77 10 1 Y 1 A GLY 78 ? A GLY 78 11 1 Y 1 A GLN 79 ? A GLN 79 12 1 Y 1 A MET 80 ? A MET 80 13 1 Y 1 A ARG 81 ? A ARG 81 14 1 Y 1 A GLU 82 ? A GLU 82 15 1 Y 1 A PRO 83 ? A PRO 83 16 1 Y 1 C PRO 69 ? C PRO 69 17 1 Y 1 C VAL 70 ? C VAL 70 18 1 Y 1 C HIS 71 ? C HIS 71 19 1 Y 1 C ALA 72 ? C ALA 72 20 1 Y 1 C GLY 73 ? C GLY 73 21 1 Y 1 C PRO 74 ? C PRO 74 22 1 Y 1 C ILE 75 ? C ILE 75 23 1 Y 1 C ALA 76 ? C ALA 76 24 1 Y 1 C PRO 77 ? C PRO 77 25 1 Y 1 C GLY 78 ? C GLY 78 26 1 Y 1 C GLN 79 ? C GLN 79 27 1 Y 1 C MET 80 ? C MET 80 28 1 Y 1 C ARG 81 ? C ARG 81 29 1 Y 1 C GLU 82 ? C GLU 82 30 1 Y 1 C PRO 83 ? C PRO 83 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.details 'DIVISION BY 3D CTF SQ' _em_ctf_correction.type ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image 0.2 _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id _em_software.imaging_id _em_software.fitting_id 1 'UCSF Chimera' ? 'MODEL FITTING' ? ? ? 1 2 AV3 ? RECONSTRUCTION ? 1 ? ? 3 SPIDER ? RECONSTRUCTION ? 1 ? ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_coordinate_model.asym_id _pdbx_coordinate_model.type A 'CA ATOMS ONLY' B 'CA ATOMS ONLY' C 'CA ATOMS ONLY' D 'CA ATOMS ONLY' # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code 1 'experimental model' PDB 1L6N 2 'experimental model' PDB 2KGF # _atom_sites.entry_id 4ARG _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_type.symbol C # loop_