data_4ARH # _entry.id 4ARH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ARH PDBE EBI-52092 WWPDB D_1290052092 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ARH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-04-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Alaleona, F.' 1 'Ilari, A.' 2 'Battistoni, A.' 3 'Petrarca, P.' 4 'Chiancone, E.' 5 # _citation.id primary _citation.title ;The Salmonella Enterica Zint Structure, Zinc Affinity and Interaction with the High-Affinity Uptake Protein Znua Provide Insight Into the Management of Periplasmic Zinc. ; _citation.journal_abbrev Biochim.Biophys.Acta _citation.journal_volume 1840 _citation.page_first 535 _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM BBACAQ _citation.country NE _citation.journal_id_ISSN 0006-3002 _citation.journal_id_CSD 0113 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24128931 _citation.pdbx_database_id_DOI 10.1016/J.BBAGEN.2013.10.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ilari, A.' 1 primary 'Alaleona, F.' 2 primary 'Tria, G.' 3 primary 'Petrarca, P.' 4 primary 'Battistoni, A.' 5 primary 'Zamparelli, C.' 6 primary 'Verzili, D.' 7 primary 'Falconi, M.' 8 primary 'Chiancone, E.' 9 # _cell.entry_id 4ARH _cell.length_a 58.534 _cell.length_b 58.534 _cell.length_c 289.316 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ARH _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'METAL-BINDING PROTEIN YODA' 21495.193 1 ? ? 'RESIDUES 31-216' ? 2 non-polymer syn 'SULFATE ION' 96.063 6 ? ? ? ? 3 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ZINT # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;APMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYVTNVETIGI ENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIFMGNTSQQALL QEMENWPTYYPYQLKANEVVDEMLHH ; _entity_poly.pdbx_seq_one_letter_code_can ;APMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYVTNVETIGI ENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIFMGNTSQQALL QEMENWPTYYPYQLKANEVVDEMLHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 PRO n 1 3 MET n 1 4 THR n 1 5 GLU n 1 6 VAL n 1 7 GLU n 1 8 GLN n 1 9 LYS n 1 10 ALA n 1 11 ALA n 1 12 ALA n 1 13 GLY n 1 14 VAL n 1 15 PHE n 1 16 ASP n 1 17 ASP n 1 18 ALA n 1 19 ASN n 1 20 VAL n 1 21 ARG n 1 22 ASP n 1 23 ARG n 1 24 ALA n 1 25 LEU n 1 26 THR n 1 27 ASP n 1 28 TRP n 1 29 ASP n 1 30 GLY n 1 31 MET n 1 32 TRP n 1 33 GLN n 1 34 SER n 1 35 VAL n 1 36 TYR n 1 37 PRO n 1 38 TYR n 1 39 LEU n 1 40 VAL n 1 41 SER n 1 42 GLY n 1 43 GLU n 1 44 LEU n 1 45 ASP n 1 46 PRO n 1 47 VAL n 1 48 PHE n 1 49 ARG n 1 50 GLN n 1 51 LYS n 1 52 ALA n 1 53 LYS n 1 54 LYS n 1 55 ASP n 1 56 PRO n 1 57 GLU n 1 58 LYS n 1 59 THR n 1 60 PHE n 1 61 GLU n 1 62 ASP n 1 63 ILE n 1 64 LYS n 1 65 ALA n 1 66 TYR n 1 67 TYR n 1 68 ARG n 1 69 LYS n 1 70 GLY n 1 71 TYR n 1 72 VAL n 1 73 THR n 1 74 ASN n 1 75 VAL n 1 76 GLU n 1 77 THR n 1 78 ILE n 1 79 GLY n 1 80 ILE n 1 81 GLU n 1 82 ASN n 1 83 GLY n 1 84 VAL n 1 85 ILE n 1 86 GLU n 1 87 PHE n 1 88 HIS n 1 89 ARG n 1 90 ASP n 1 91 ASN n 1 92 ASN n 1 93 VAL n 1 94 ALA n 1 95 SER n 1 96 CYS n 1 97 LYS n 1 98 TYR n 1 99 ASN n 1 100 TYR n 1 101 ALA n 1 102 GLY n 1 103 TYR n 1 104 LYS n 1 105 ILE n 1 106 LEU n 1 107 THR n 1 108 TYR n 1 109 ALA n 1 110 SER n 1 111 GLY n 1 112 LYS n 1 113 LYS n 1 114 GLY n 1 115 VAL n 1 116 ARG n 1 117 TYR n 1 118 LEU n 1 119 PHE n 1 120 GLU n 1 121 CYS n 1 122 LYS n 1 123 ASP n 1 124 ALA n 1 125 ASN n 1 126 SER n 1 127 LYS n 1 128 ALA n 1 129 PRO n 1 130 LYS n 1 131 TYR n 1 132 VAL n 1 133 GLN n 1 134 PHE n 1 135 SER n 1 136 ASP n 1 137 HIS n 1 138 ILE n 1 139 ILE n 1 140 ALA n 1 141 PRO n 1 142 ARG n 1 143 LYS n 1 144 SER n 1 145 ALA n 1 146 HIS n 1 147 PHE n 1 148 HIS n 1 149 ILE n 1 150 PHE n 1 151 MET n 1 152 GLY n 1 153 ASN n 1 154 THR n 1 155 SER n 1 156 GLN n 1 157 GLN n 1 158 ALA n 1 159 LEU n 1 160 LEU n 1 161 GLN n 1 162 GLU n 1 163 MET n 1 164 GLU n 1 165 ASN n 1 166 TRP n 1 167 PRO n 1 168 THR n 1 169 TYR n 1 170 TYR n 1 171 PRO n 1 172 TYR n 1 173 GLN n 1 174 LEU n 1 175 LYS n 1 176 ALA n 1 177 ASN n 1 178 GLU n 1 179 VAL n 1 180 VAL n 1 181 ASP n 1 182 GLU n 1 183 MET n 1 184 LEU n 1 185 HIS n 1 186 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain CMV23701 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 440534 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 14028 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 668369 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'DH5[ALPHA]' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PSE420 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B5MZR0_SALET _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession B5MZR0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ARH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 186 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B5MZR0 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 216 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 193 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ARH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.41 _exptl_crystal.density_percent_sol 63.92 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'AMMONIUM SULFATE 2 M, SODIUM ACETATE 0.1 M PH 5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2010-07-22 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.918 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4ARH _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.30 _reflns.number_obs 14007 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.62 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.24 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 14.75 _reflns_shell.pdbx_redundancy 14.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ARH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13233 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.69 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.26 _refine.ls_R_factor_obs 0.22388 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22054 _refine.ls_R_factor_R_free 0.28841 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 693 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.919 _refine.correlation_coeff_Fo_to_Fc_free 0.852 _refine.B_iso_mean 23.858 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] -0.05 _refine.aniso_B[3][3] 0.08 _refine.aniso_B[1][2] -0.03 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 10EK' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.271 _refine.pdbx_overall_ESU_R_Free 0.245 _refine.overall_SU_ML 0.165 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.672 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1503 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1669 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 50.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 1641 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.283 1.956 ? 2240 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.547 5.000 ? 207 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.358 24.828 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.537 15.000 ? 283 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.068 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 226 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.021 ? 1276 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.756 1.500 ? 960 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.457 2.000 ? 1556 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.993 3.000 ? 681 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.365 4.500 ? 673 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.302 _refine_ls_shell.d_res_low 2.362 _refine_ls_shell.number_reflns_R_work 937 _refine_ls_shell.R_factor_R_work 0.282 _refine_ls_shell.percent_reflns_obs 99.80 _refine_ls_shell.R_factor_R_free 0.386 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4ARH _struct.title 'X ray structure of the periplasmic zinc binding protein ZinT from Salmonella enterica' _struct.pdbx_descriptor 'METAL-BINDING PROTEIN YODA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ARH _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'METAL BINDING PROTEIN, PERIPLASMIC PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 4 ? ALA A 12 ? THR A 11 ALA A 19 1 ? 9 HELX_P HELX_P2 2 ASP A 16 ? VAL A 20 ? ASP A 23 VAL A 27 5 ? 5 HELX_P HELX_P3 3 ALA A 24 ? ASP A 29 ? ALA A 31 ASP A 36 5 ? 6 HELX_P HELX_P4 4 VAL A 35 ? SER A 41 ? VAL A 42 SER A 48 1 ? 7 HELX_P HELX_P5 5 LEU A 44 ? LYS A 54 ? LEU A 51 LYS A 61 1 ? 11 HELX_P HELX_P6 6 THR A 59 ? VAL A 72 ? THR A 66 VAL A 79 1 ? 14 HELX_P HELX_P7 7 SER A 155 ? LEU A 160 ? SER A 162 LEU A 167 1 ? 6 HELX_P HELX_P8 8 LYS A 175 ? HIS A 186 ? LYS A 182 HIS A 193 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 96 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 121 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 103 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 128 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.072 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 9 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ASN A 92 ? LYS A 97 ? ASN A 99 LYS A 104 AA 2 VAL A 84 ? ARG A 89 ? VAL A 91 ARG A 96 AA 3 VAL A 75 ? GLU A 81 ? VAL A 82 GLU A 88 AA 4 GLY A 30 ? SER A 34 ? GLY A 37 SER A 41 AA 5 THR A 168 ? PRO A 171 ? THR A 175 PRO A 178 AA 6 PHE A 147 ? GLY A 152 ? PHE A 154 GLY A 159 AA 7 TYR A 131 ? SER A 135 ? TYR A 138 SER A 142 AA 8 LYS A 113 ? GLU A 120 ? LYS A 120 GLU A 127 AA 9 ASN A 99 ? THR A 107 ? ASN A 106 THR A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N CYS A 96 ? N CYS A 103 O ILE A 85 ? O ILE A 92 AA 2 3 N HIS A 88 ? N HIS A 95 O THR A 77 ? O THR A 84 AA 3 4 N ILE A 80 ? N ILE A 87 O GLY A 30 ? O GLY A 37 AA 4 5 N GLN A 33 ? N GLN A 40 O TYR A 170 ? O TYR A 177 AA 5 6 N TYR A 169 ? N TYR A 176 O PHE A 147 ? O PHE A 154 AA 6 7 N GLY A 152 ? N GLY A 159 O TYR A 131 ? O TYR A 138 AA 7 8 N PHE A 134 ? N PHE A 141 O TYR A 117 ? O TYR A 124 AA 8 9 N GLU A 120 ? N GLU A 127 O ASN A 99 ? O ASN A 106 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1194' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1195' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1196' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1197' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1198' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 1199' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 THR A 73 ? THR A 80 . ? 1_555 ? 2 AC1 5 ASN A 74 ? ASN A 81 . ? 1_555 ? 3 AC1 5 ARG A 89 ? ARG A 96 . ? 1_555 ? 4 AC1 5 HOH H . ? HOH A 2068 . ? 1_555 ? 5 AC1 5 HOH H . ? HOH A 2130 . ? 1_555 ? 6 AC2 5 ALA A 52 ? ALA A 59 . ? 1_555 ? 7 AC2 5 THR A 59 ? THR A 66 . ? 1_555 ? 8 AC2 5 PHE A 60 ? PHE A 67 . ? 1_555 ? 9 AC2 5 GLU A 61 ? GLU A 68 . ? 1_555 ? 10 AC2 5 HOH H . ? HOH A 2053 . ? 1_555 ? 11 AC3 3 MET A 163 ? MET A 170 . ? 1_555 ? 12 AC3 3 TRP A 166 ? TRP A 173 . ? 1_555 ? 13 AC3 3 HOH H . ? HOH A 2092 . ? 1_555 ? 14 AC4 4 PHE A 87 ? PHE A 94 . ? 1_555 ? 15 AC4 4 ARG A 89 ? ARG A 96 . ? 1_555 ? 16 AC4 4 LYS A 127 ? LYS A 134 . ? 1_555 ? 17 AC4 4 PRO A 129 ? PRO A 136 . ? 1_555 ? 18 AC5 4 ASN A 99 ? ASN A 106 . ? 1_555 ? 19 AC5 4 TYR A 100 ? TYR A 107 . ? 1_555 ? 20 AC5 4 HOH H . ? HOH A 2082 . ? 1_555 ? 21 AC5 4 HOH H . ? HOH A 2134 . ? 1_555 ? 22 AC6 6 TYR A 67 ? TYR A 74 . ? 1_555 ? 23 AC6 6 HIS A 137 ? HIS A 144 . ? 1_555 ? 24 AC6 6 HIS A 148 ? HIS A 155 . ? 1_555 ? 25 AC6 6 HOH H . ? HOH A 2066 . ? 1_555 ? 26 AC6 6 HOH H . ? HOH A 2109 . ? 1_555 ? 27 AC6 6 HOH H . ? HOH A 2136 . ? 1_555 ? # _database_PDB_matrix.entry_id 4ARH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ARH _atom_sites.fract_transf_matrix[1][1] 0.017084 _atom_sites.fract_transf_matrix[1][2] 0.009864 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019727 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003456 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 8 8 ALA ALA A . n A 1 2 PRO 2 9 9 PRO PRO A . n A 1 3 MET 3 10 10 MET MET A . n A 1 4 THR 4 11 11 THR THR A . n A 1 5 GLU 5 12 12 GLU GLU A . n A 1 6 VAL 6 13 13 VAL VAL A . n A 1 7 GLU 7 14 14 GLU GLU A . n A 1 8 GLN 8 15 15 GLN GLN A . n A 1 9 LYS 9 16 16 LYS LYS A . n A 1 10 ALA 10 17 17 ALA ALA A . n A 1 11 ALA 11 18 18 ALA ALA A . n A 1 12 ALA 12 19 19 ALA ALA A . n A 1 13 GLY 13 20 20 GLY GLY A . n A 1 14 VAL 14 21 21 VAL VAL A . n A 1 15 PHE 15 22 22 PHE PHE A . n A 1 16 ASP 16 23 23 ASP ASP A . n A 1 17 ASP 17 24 24 ASP ASP A . n A 1 18 ALA 18 25 25 ALA ALA A . n A 1 19 ASN 19 26 26 ASN ASN A . n A 1 20 VAL 20 27 27 VAL VAL A . n A 1 21 ARG 21 28 28 ARG ARG A . n A 1 22 ASP 22 29 29 ASP ASP A . n A 1 23 ARG 23 30 30 ARG ARG A . n A 1 24 ALA 24 31 31 ALA ALA A . n A 1 25 LEU 25 32 32 LEU LEU A . n A 1 26 THR 26 33 33 THR THR A . n A 1 27 ASP 27 34 34 ASP ASP A . n A 1 28 TRP 28 35 35 TRP TRP A . n A 1 29 ASP 29 36 36 ASP ASP A . n A 1 30 GLY 30 37 37 GLY GLY A . n A 1 31 MET 31 38 38 MET MET A . n A 1 32 TRP 32 39 39 TRP TRP A . n A 1 33 GLN 33 40 40 GLN GLN A . n A 1 34 SER 34 41 41 SER SER A . n A 1 35 VAL 35 42 42 VAL VAL A . n A 1 36 TYR 36 43 43 TYR TYR A . n A 1 37 PRO 37 44 44 PRO PRO A . n A 1 38 TYR 38 45 45 TYR TYR A . n A 1 39 LEU 39 46 46 LEU LEU A . n A 1 40 VAL 40 47 47 VAL VAL A . n A 1 41 SER 41 48 48 SER SER A . n A 1 42 GLY 42 49 49 GLY GLY A . n A 1 43 GLU 43 50 50 GLU GLU A . n A 1 44 LEU 44 51 51 LEU LEU A . n A 1 45 ASP 45 52 52 ASP ASP A . n A 1 46 PRO 46 53 53 PRO PRO A . n A 1 47 VAL 47 54 54 VAL VAL A . n A 1 48 PHE 48 55 55 PHE PHE A . n A 1 49 ARG 49 56 56 ARG ARG A . n A 1 50 GLN 50 57 57 GLN GLN A . n A 1 51 LYS 51 58 58 LYS LYS A . n A 1 52 ALA 52 59 59 ALA ALA A . n A 1 53 LYS 53 60 60 LYS LYS A . n A 1 54 LYS 54 61 61 LYS LYS A . n A 1 55 ASP 55 62 62 ASP ASP A . n A 1 56 PRO 56 63 63 PRO PRO A . n A 1 57 GLU 57 64 64 GLU GLU A . n A 1 58 LYS 58 65 65 LYS LYS A . n A 1 59 THR 59 66 66 THR THR A . n A 1 60 PHE 60 67 67 PHE PHE A . n A 1 61 GLU 61 68 68 GLU GLU A . n A 1 62 ASP 62 69 69 ASP ASP A . n A 1 63 ILE 63 70 70 ILE ILE A . n A 1 64 LYS 64 71 71 LYS LYS A . n A 1 65 ALA 65 72 72 ALA ALA A . n A 1 66 TYR 66 73 73 TYR TYR A . n A 1 67 TYR 67 74 74 TYR TYR A . n A 1 68 ARG 68 75 75 ARG ARG A . n A 1 69 LYS 69 76 76 LYS LYS A . n A 1 70 GLY 70 77 77 GLY GLY A . n A 1 71 TYR 71 78 78 TYR TYR A . n A 1 72 VAL 72 79 79 VAL VAL A . n A 1 73 THR 73 80 80 THR THR A . n A 1 74 ASN 74 81 81 ASN ASN A . n A 1 75 VAL 75 82 82 VAL VAL A . n A 1 76 GLU 76 83 83 GLU GLU A . n A 1 77 THR 77 84 84 THR THR A . n A 1 78 ILE 78 85 85 ILE ILE A . n A 1 79 GLY 79 86 86 GLY GLY A . n A 1 80 ILE 80 87 87 ILE ILE A . n A 1 81 GLU 81 88 88 GLU GLU A . n A 1 82 ASN 82 89 89 ASN ASN A . n A 1 83 GLY 83 90 90 GLY GLY A . n A 1 84 VAL 84 91 91 VAL VAL A . n A 1 85 ILE 85 92 92 ILE ILE A . n A 1 86 GLU 86 93 93 GLU GLU A . n A 1 87 PHE 87 94 94 PHE PHE A . n A 1 88 HIS 88 95 95 HIS HIS A . n A 1 89 ARG 89 96 96 ARG ARG A . n A 1 90 ASP 90 97 97 ASP ASP A . n A 1 91 ASN 91 98 98 ASN ASN A . n A 1 92 ASN 92 99 99 ASN ASN A . n A 1 93 VAL 93 100 100 VAL VAL A . n A 1 94 ALA 94 101 101 ALA ALA A . n A 1 95 SER 95 102 102 SER SER A . n A 1 96 CYS 96 103 103 CYS CYS A . n A 1 97 LYS 97 104 104 LYS LYS A . n A 1 98 TYR 98 105 105 TYR TYR A . n A 1 99 ASN 99 106 106 ASN ASN A . n A 1 100 TYR 100 107 107 TYR TYR A . n A 1 101 ALA 101 108 108 ALA ALA A . n A 1 102 GLY 102 109 109 GLY GLY A . n A 1 103 TYR 103 110 110 TYR TYR A . n A 1 104 LYS 104 111 111 LYS LYS A . n A 1 105 ILE 105 112 112 ILE ILE A . n A 1 106 LEU 106 113 113 LEU LEU A . n A 1 107 THR 107 114 114 THR THR A . n A 1 108 TYR 108 115 115 TYR TYR A . n A 1 109 ALA 109 116 116 ALA ALA A . n A 1 110 SER 110 117 117 SER SER A . n A 1 111 GLY 111 118 118 GLY GLY A . n A 1 112 LYS 112 119 119 LYS LYS A . n A 1 113 LYS 113 120 120 LYS LYS A . n A 1 114 GLY 114 121 121 GLY GLY A . n A 1 115 VAL 115 122 122 VAL VAL A . n A 1 116 ARG 116 123 123 ARG ARG A . n A 1 117 TYR 117 124 124 TYR TYR A . n A 1 118 LEU 118 125 125 LEU LEU A . n A 1 119 PHE 119 126 126 PHE PHE A . n A 1 120 GLU 120 127 127 GLU GLU A . n A 1 121 CYS 121 128 128 CYS CYS A . n A 1 122 LYS 122 129 129 LYS LYS A . n A 1 123 ASP 123 130 130 ASP ASP A . n A 1 124 ALA 124 131 131 ALA ALA A . n A 1 125 ASN 125 132 132 ASN ASN A . n A 1 126 SER 126 133 133 SER SER A . n A 1 127 LYS 127 134 134 LYS LYS A . n A 1 128 ALA 128 135 135 ALA ALA A . n A 1 129 PRO 129 136 136 PRO PRO A . n A 1 130 LYS 130 137 137 LYS LYS A . n A 1 131 TYR 131 138 138 TYR TYR A . n A 1 132 VAL 132 139 139 VAL VAL A . n A 1 133 GLN 133 140 140 GLN GLN A . n A 1 134 PHE 134 141 141 PHE PHE A . n A 1 135 SER 135 142 142 SER SER A . n A 1 136 ASP 136 143 143 ASP ASP A . n A 1 137 HIS 137 144 144 HIS HIS A . n A 1 138 ILE 138 145 145 ILE ILE A . n A 1 139 ILE 139 146 146 ILE ILE A . n A 1 140 ALA 140 147 147 ALA ALA A . n A 1 141 PRO 141 148 148 PRO PRO A . n A 1 142 ARG 142 149 149 ARG ARG A . n A 1 143 LYS 143 150 150 LYS LYS A . n A 1 144 SER 144 151 151 SER SER A . n A 1 145 ALA 145 152 152 ALA ALA A . n A 1 146 HIS 146 153 153 HIS HIS A . n A 1 147 PHE 147 154 154 PHE PHE A . n A 1 148 HIS 148 155 155 HIS HIS A . n A 1 149 ILE 149 156 156 ILE ILE A . n A 1 150 PHE 150 157 157 PHE PHE A . n A 1 151 MET 151 158 158 MET MET A . n A 1 152 GLY 152 159 159 GLY GLY A . n A 1 153 ASN 153 160 160 ASN ASN A . n A 1 154 THR 154 161 161 THR THR A . n A 1 155 SER 155 162 162 SER SER A . n A 1 156 GLN 156 163 163 GLN GLN A . n A 1 157 GLN 157 164 164 GLN GLN A . n A 1 158 ALA 158 165 165 ALA ALA A . n A 1 159 LEU 159 166 166 LEU LEU A . n A 1 160 LEU 160 167 167 LEU LEU A . n A 1 161 GLN 161 168 168 GLN GLN A . n A 1 162 GLU 162 169 169 GLU GLU A . n A 1 163 MET 163 170 170 MET MET A . n A 1 164 GLU 164 171 171 GLU GLU A . n A 1 165 ASN 165 172 172 ASN ASN A . n A 1 166 TRP 166 173 173 TRP TRP A . n A 1 167 PRO 167 174 174 PRO PRO A . n A 1 168 THR 168 175 175 THR THR A . n A 1 169 TYR 169 176 176 TYR TYR A . n A 1 170 TYR 170 177 177 TYR TYR A . n A 1 171 PRO 171 178 178 PRO PRO A . n A 1 172 TYR 172 179 179 TYR TYR A . n A 1 173 GLN 173 180 180 GLN GLN A . n A 1 174 LEU 174 181 181 LEU LEU A . n A 1 175 LYS 175 182 182 LYS LYS A . n A 1 176 ALA 176 183 183 ALA ALA A . n A 1 177 ASN 177 184 184 ASN ASN A . n A 1 178 GLU 178 185 185 GLU GLU A . n A 1 179 VAL 179 186 186 VAL VAL A . n A 1 180 VAL 180 187 187 VAL VAL A . n A 1 181 ASP 181 188 188 ASP ASP A . n A 1 182 GLU 182 189 189 GLU GLU A . n A 1 183 MET 183 190 190 MET MET A . n A 1 184 LEU 184 191 191 LEU LEU A . n A 1 185 HIS 185 192 192 HIS HIS A . n A 1 186 HIS 186 193 193 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1194 1194 SO4 SO4 A . C 2 SO4 1 1195 1195 SO4 SO4 A . D 2 SO4 1 1196 1196 SO4 SO4 A . E 2 SO4 1 1197 1197 SO4 SO4 A . F 2 SO4 1 1198 1198 SO4 SO4 A . G 2 SO4 1 1199 1199 SO4 SO4 A . H 3 HOH 1 2001 2001 HOH HOH A . H 3 HOH 2 2002 2002 HOH HOH A . H 3 HOH 3 2003 2003 HOH HOH A . H 3 HOH 4 2004 2004 HOH HOH A . H 3 HOH 5 2005 2005 HOH HOH A . H 3 HOH 6 2006 2006 HOH HOH A . H 3 HOH 7 2007 2007 HOH HOH A . H 3 HOH 8 2008 2008 HOH HOH A . H 3 HOH 9 2009 2009 HOH HOH A . H 3 HOH 10 2010 2010 HOH HOH A . H 3 HOH 11 2011 2011 HOH HOH A . H 3 HOH 12 2012 2012 HOH HOH A . H 3 HOH 13 2013 2013 HOH HOH A . H 3 HOH 14 2014 2014 HOH HOH A . H 3 HOH 15 2015 2015 HOH HOH A . H 3 HOH 16 2016 2016 HOH HOH A . H 3 HOH 17 2017 2017 HOH HOH A . H 3 HOH 18 2018 2018 HOH HOH A . H 3 HOH 19 2019 2019 HOH HOH A . H 3 HOH 20 2020 2020 HOH HOH A . H 3 HOH 21 2021 2021 HOH HOH A . H 3 HOH 22 2022 2022 HOH HOH A . H 3 HOH 23 2023 2023 HOH HOH A . H 3 HOH 24 2024 2024 HOH HOH A . H 3 HOH 25 2025 2025 HOH HOH A . H 3 HOH 26 2026 2026 HOH HOH A . H 3 HOH 27 2027 2027 HOH HOH A . H 3 HOH 28 2028 2028 HOH HOH A . H 3 HOH 29 2029 2029 HOH HOH A . H 3 HOH 30 2030 2030 HOH HOH A . H 3 HOH 31 2031 2031 HOH HOH A . H 3 HOH 32 2032 2032 HOH HOH A . H 3 HOH 33 2033 2033 HOH HOH A . H 3 HOH 34 2034 2034 HOH HOH A . H 3 HOH 35 2035 2035 HOH HOH A . H 3 HOH 36 2036 2036 HOH HOH A . H 3 HOH 37 2037 2037 HOH HOH A . H 3 HOH 38 2038 2038 HOH HOH A . H 3 HOH 39 2039 2039 HOH HOH A . H 3 HOH 40 2040 2040 HOH HOH A . H 3 HOH 41 2041 2041 HOH HOH A . H 3 HOH 42 2042 2042 HOH HOH A . H 3 HOH 43 2043 2043 HOH HOH A . H 3 HOH 44 2044 2044 HOH HOH A . H 3 HOH 45 2045 2045 HOH HOH A . H 3 HOH 46 2046 2046 HOH HOH A . H 3 HOH 47 2047 2047 HOH HOH A . H 3 HOH 48 2048 2048 HOH HOH A . H 3 HOH 49 2049 2049 HOH HOH A . H 3 HOH 50 2050 2050 HOH HOH A . H 3 HOH 51 2051 2051 HOH HOH A . H 3 HOH 52 2052 2052 HOH HOH A . H 3 HOH 53 2053 2053 HOH HOH A . H 3 HOH 54 2054 2054 HOH HOH A . H 3 HOH 55 2055 2055 HOH HOH A . H 3 HOH 56 2056 2056 HOH HOH A . H 3 HOH 57 2057 2057 HOH HOH A . H 3 HOH 58 2058 2058 HOH HOH A . H 3 HOH 59 2059 2059 HOH HOH A . H 3 HOH 60 2060 2060 HOH HOH A . H 3 HOH 61 2061 2061 HOH HOH A . H 3 HOH 62 2062 2062 HOH HOH A . H 3 HOH 63 2063 2063 HOH HOH A . H 3 HOH 64 2064 2064 HOH HOH A . H 3 HOH 65 2065 2065 HOH HOH A . H 3 HOH 66 2066 2066 HOH HOH A . H 3 HOH 67 2067 2067 HOH HOH A . H 3 HOH 68 2068 2068 HOH HOH A . H 3 HOH 69 2069 2069 HOH HOH A . H 3 HOH 70 2070 2070 HOH HOH A . H 3 HOH 71 2071 2071 HOH HOH A . H 3 HOH 72 2072 2072 HOH HOH A . H 3 HOH 73 2073 2073 HOH HOH A . H 3 HOH 74 2074 2074 HOH HOH A . H 3 HOH 75 2075 2075 HOH HOH A . H 3 HOH 76 2076 2076 HOH HOH A . H 3 HOH 77 2077 2077 HOH HOH A . H 3 HOH 78 2078 2078 HOH HOH A . H 3 HOH 79 2079 2079 HOH HOH A . H 3 HOH 80 2080 2080 HOH HOH A . H 3 HOH 81 2081 2081 HOH HOH A . H 3 HOH 82 2082 2082 HOH HOH A . H 3 HOH 83 2083 2083 HOH HOH A . H 3 HOH 84 2084 2084 HOH HOH A . H 3 HOH 85 2085 2085 HOH HOH A . H 3 HOH 86 2086 2086 HOH HOH A . H 3 HOH 87 2087 2087 HOH HOH A . H 3 HOH 88 2088 2088 HOH HOH A . H 3 HOH 89 2089 2089 HOH HOH A . H 3 HOH 90 2090 2090 HOH HOH A . H 3 HOH 91 2091 2091 HOH HOH A . H 3 HOH 92 2092 2092 HOH HOH A . H 3 HOH 93 2093 2093 HOH HOH A . H 3 HOH 94 2094 2094 HOH HOH A . H 3 HOH 95 2095 2095 HOH HOH A . H 3 HOH 96 2096 2096 HOH HOH A . H 3 HOH 97 2097 2097 HOH HOH A . H 3 HOH 98 2098 2098 HOH HOH A . H 3 HOH 99 2099 2099 HOH HOH A . H 3 HOH 100 2100 2100 HOH HOH A . H 3 HOH 101 2101 2101 HOH HOH A . H 3 HOH 102 2102 2102 HOH HOH A . H 3 HOH 103 2103 2103 HOH HOH A . H 3 HOH 104 2104 2104 HOH HOH A . H 3 HOH 105 2105 2105 HOH HOH A . H 3 HOH 106 2106 2106 HOH HOH A . H 3 HOH 107 2107 2107 HOH HOH A . H 3 HOH 108 2108 2108 HOH HOH A . H 3 HOH 109 2109 2109 HOH HOH A . H 3 HOH 110 2110 2110 HOH HOH A . H 3 HOH 111 2111 2111 HOH HOH A . H 3 HOH 112 2112 2112 HOH HOH A . H 3 HOH 113 2113 2113 HOH HOH A . H 3 HOH 114 2114 2114 HOH HOH A . H 3 HOH 115 2115 2115 HOH HOH A . H 3 HOH 116 2116 2116 HOH HOH A . H 3 HOH 117 2117 2117 HOH HOH A . H 3 HOH 118 2118 2118 HOH HOH A . H 3 HOH 119 2119 2119 HOH HOH A . H 3 HOH 120 2120 2120 HOH HOH A . H 3 HOH 121 2121 2121 HOH HOH A . H 3 HOH 122 2122 2122 HOH HOH A . H 3 HOH 123 2123 2123 HOH HOH A . H 3 HOH 124 2124 2124 HOH HOH A . H 3 HOH 125 2125 2125 HOH HOH A . H 3 HOH 126 2126 2126 HOH HOH A . H 3 HOH 127 2127 2127 HOH HOH A . H 3 HOH 128 2128 2128 HOH HOH A . H 3 HOH 129 2129 2129 HOH HOH A . H 3 HOH 130 2130 2130 HOH HOH A . H 3 HOH 131 2131 2131 HOH HOH A . H 3 HOH 132 2132 2132 HOH HOH A . H 3 HOH 133 2133 2133 HOH HOH A . H 3 HOH 134 2134 2134 HOH HOH A . H 3 HOH 135 2135 2135 HOH HOH A . H 3 HOH 136 2136 2136 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-08 2 'Structure model' 1 1 2013-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0070 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ALA _pdbx_validate_close_contact.auth_seq_id_1 25 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 28 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 28 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 28 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 28 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.71 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.59 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 9 ? ? -59.25 178.58 2 1 GLU A 88 ? ? -171.37 144.95 3 1 ASP A 97 ? ? 50.18 -120.53 4 1 ASN A 132 ? ? -110.32 52.10 5 1 ASP A 143 ? ? -144.41 27.05 6 1 ARG A 149 ? ? -172.58 138.39 7 1 HIS A 153 ? ? 177.44 151.21 8 1 TRP A 173 ? ? -151.84 75.83 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 179 ? CG ? A TYR 172 CG 2 1 Y 1 A TYR 179 ? CD1 ? A TYR 172 CD1 3 1 Y 1 A TYR 179 ? CD2 ? A TYR 172 CD2 4 1 Y 1 A TYR 179 ? CE1 ? A TYR 172 CE1 5 1 Y 1 A TYR 179 ? CE2 ? A TYR 172 CE2 6 1 Y 1 A TYR 179 ? CZ ? A TYR 172 CZ 7 1 Y 1 A TYR 179 ? OH ? A TYR 172 OH 8 1 Y 1 A HIS 193 ? CG ? A HIS 186 CG 9 1 Y 1 A HIS 193 ? ND1 ? A HIS 186 ND1 10 1 Y 1 A HIS 193 ? CD2 ? A HIS 186 CD2 11 1 Y 1 A HIS 193 ? CE1 ? A HIS 186 CE1 12 1 Y 1 A HIS 193 ? NE2 ? A HIS 186 NE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #