HEADER HYDROLASE 25-APR-12 4ARL TITLE STRUCTURE OF THE INACTIVE PESTICIN D207A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PESTICIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: T7, PET KEYWDS HYDROLASE, MURAMIDASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,S.I.PATZER,R.ALBRECHT,V.BRAUN REVDAT 4 05-SEP-12 4ARL 1 REMARK REVDAT 3 18-JUL-12 4ARL 1 JRNL REVDAT 2 30-MAY-12 4ARL 1 JRNL REVDAT 1 16-MAY-12 4ARL 0 JRNL AUTH S.I.PATZER,R.ALBRECHT,V.BRAUN,K.ZETH JRNL TITL STRUCTURE AND MECHANISTIC STUDIES OF PESTICIN, A BACTERIAL JRNL TITL 2 HOMOLOG OF PHAGE LYSOZYMES. JRNL REF J.BIOL.CHEM. V. 287 23381 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22593569 JRNL DOI 10.1074/JBC.M112.362913 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.999 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.430 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.50 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.77 REMARK 3 NUMBER OF REFLECTIONS : 50456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1981 REMARK 3 R VALUE (WORKING SET) : 0.1962 REMARK 3 FREE R VALUE : 0.2414 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.4545 - 4.8170 1.00 3823 158 0.1839 0.2064 REMARK 3 2 4.8170 - 3.8236 0.99 3600 148 0.1591 0.2011 REMARK 3 3 3.8236 - 3.3404 0.99 3546 147 0.1920 0.2714 REMARK 3 4 3.3404 - 3.0350 0.99 3533 146 0.1953 0.2169 REMARK 3 5 3.0350 - 2.8174 0.99 3494 144 0.2063 0.2543 REMARK 3 6 2.8174 - 2.6513 0.99 3487 143 0.2002 0.2472 REMARK 3 7 2.6513 - 2.5185 1.00 3450 144 0.2096 0.2912 REMARK 3 8 2.5185 - 2.4089 0.99 3537 145 0.2146 0.2645 REMARK 3 9 2.4089 - 2.3162 0.99 3446 143 0.2107 0.2180 REMARK 3 10 2.3162 - 2.2362 0.99 3438 142 0.2131 0.2817 REMARK 3 11 2.2362 - 2.1663 0.98 3423 140 0.2343 0.2995 REMARK 3 12 2.1663 - 2.1044 0.97 3356 139 0.2310 0.2998 REMARK 3 13 2.1044 - 2.0490 0.94 3285 136 0.2517 0.3034 REMARK 3 14 2.0490 - 1.9990 0.87 3038 125 0.2849 0.3094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.336 REMARK 3 B_SOL : 39.722 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.30 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.5223 REMARK 3 B22 (A**2) : -2.0584 REMARK 3 B33 (A**2) : -5.4639 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 5808 REMARK 3 ANGLE : 1.257 7573 REMARK 3 CHIRALITY : 0.100 836 REMARK 3 PLANARITY : 0.007 996 REMARK 3 DIHEDRAL : 14.234 2114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 13:37) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4291 8.4511 -45.9308 REMARK 3 T TENSOR REMARK 3 T11: 0.4424 T22: 0.6830 REMARK 3 T33: 0.3479 T12: 0.0121 REMARK 3 T13: 0.0331 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.9538 L22: 0.2917 REMARK 3 L33: 0.6008 L12: -0.3107 REMARK 3 L13: -0.5747 L23: 0.4110 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.1655 S13: -0.0856 REMARK 3 S21: -0.0470 S22: 0.0990 S23: -0.1813 REMARK 3 S31: -0.1332 S32: -0.1657 S33: -0.0705 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 38:164) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9878 9.3281 -34.1529 REMARK 3 T TENSOR REMARK 3 T11: 0.2108 T22: 0.4447 REMARK 3 T33: -0.0979 T12: -0.1705 REMARK 3 T13: -0.0501 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 0.9598 L22: 0.7312 REMARK 3 L33: 1.1074 L12: -0.1767 REMARK 3 L13: 0.1441 L23: -0.3650 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: 0.7029 S13: 0.4574 REMARK 3 S21: -0.4980 S22: 0.1613 S23: -0.0187 REMARK 3 S31: 0.6614 S32: -0.4808 S33: 0.4621 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 165:222) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0402 29.0692 -7.6913 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1449 REMARK 3 T33: 0.2626 T12: 0.0577 REMARK 3 T13: -0.0013 T23: -0.0999 REMARK 3 L TENSOR REMARK 3 L11: 0.2866 L22: 0.1757 REMARK 3 L33: 0.0963 L12: 0.1886 REMARK 3 L13: -0.1437 L23: -0.0955 REMARK 3 S TENSOR REMARK 3 S11: -0.1123 S12: -0.0907 S13: 0.1052 REMARK 3 S21: 0.0298 S22: 0.2048 S23: -0.2353 REMARK 3 S31: 0.1003 S32: 0.0981 S33: 0.2869 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 223:336) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7365 20.0906 -7.6437 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.0845 REMARK 3 T33: 0.2256 T12: 0.0064 REMARK 3 T13: -0.0042 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 0.6522 L22: 0.2687 REMARK 3 L33: 0.3856 L12: -0.2654 REMARK 3 L13: -0.1571 L23: 0.1790 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0571 S13: -0.0112 REMARK 3 S21: 0.0762 S22: 0.0822 S23: -0.1540 REMARK 3 S31: 0.0606 S32: 0.0724 S33: 0.1320 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 337:360) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5123 13.1153 -4.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.1831 REMARK 3 T33: 0.2420 T12: 0.0060 REMARK 3 T13: 0.0136 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.0429 L22: 0.2060 REMARK 3 L33: 0.6749 L12: 0.0448 REMARK 3 L13: -0.0490 L23: -0.3696 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: 0.1016 S13: 0.1400 REMARK 3 S21: 0.1699 S22: 0.0449 S23: 0.0076 REMARK 3 S31: -0.0598 S32: -0.3541 S33: -0.0136 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 11:30) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3799 55.8219 -54.1382 REMARK 3 T TENSOR REMARK 3 T11: 0.4577 T22: 0.9138 REMARK 3 T33: 0.2024 T12: 0.2467 REMARK 3 T13: -0.0249 T23: 0.0862 REMARK 3 L TENSOR REMARK 3 L11: 0.1039 L22: 0.2436 REMARK 3 L33: 1.1378 L12: -0.0367 REMARK 3 L13: 0.1375 L23: 0.1162 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.0382 S13: -0.0252 REMARK 3 S21: -0.0037 S22: 0.0362 S23: -0.1576 REMARK 3 S31: -0.0075 S32: 0.3389 S33: 0.0634 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 31:58) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4833 47.8113 -57.6831 REMARK 3 T TENSOR REMARK 3 T11: 0.5990 T22: 1.0606 REMARK 3 T33: 0.2414 T12: 0.2034 REMARK 3 T13: -0.0400 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 0.0428 L22: 0.0237 REMARK 3 L33: 0.0080 L12: 0.0157 REMARK 3 L13: 0.0089 L23: 0.0129 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: 0.0909 S13: 0.0112 REMARK 3 S21: -0.0079 S22: 0.1017 S23: -0.0117 REMARK 3 S31: 0.0409 S32: -0.0363 S33: -0.0157 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 59:164) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0304 53.5036 -41.5481 REMARK 3 T TENSOR REMARK 3 T11: 0.4404 T22: 0.6290 REMARK 3 T33: 0.0946 T12: 0.1116 REMARK 3 T13: -0.0477 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.3298 L22: 0.1579 REMARK 3 L33: 0.4810 L12: -0.0840 REMARK 3 L13: 0.1343 L23: -0.2158 REMARK 3 S TENSOR REMARK 3 S11: 0.1415 S12: 0.2808 S13: 0.2555 REMARK 3 S21: -0.1445 S22: -0.0739 S23: 0.0478 REMARK 3 S31: -0.0674 S32: -0.4715 S33: 0.2477 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 165:228) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1985 72.9820 -19.3727 REMARK 3 T TENSOR REMARK 3 T11: 0.4644 T22: 0.2434 REMARK 3 T33: 0.4276 T12: -0.0844 REMARK 3 T13: 0.1528 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 0.7559 L22: 0.2030 REMARK 3 L33: 0.1623 L12: 0.2111 REMARK 3 L13: -0.1969 L23: 0.0644 REMARK 3 S TENSOR REMARK 3 S11: 0.0440 S12: 0.1982 S13: 0.4474 REMARK 3 S21: -0.5184 S22: 0.2243 S23: -0.3920 REMARK 3 S31: -0.4654 S32: 0.2583 S33: -0.0154 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 229:357) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1748 61.0952 -16.2360 REMARK 3 T TENSOR REMARK 3 T11: 0.2470 T22: 0.1218 REMARK 3 T33: 0.1943 T12: -0.0332 REMARK 3 T13: 0.0127 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 0.3769 REMARK 3 L33: 0.9441 L12: -0.0968 REMARK 3 L13: 0.0286 L23: 0.5523 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.0127 S13: 0.0406 REMARK 3 S21: -0.1464 S22: 0.0519 S23: -0.1499 REMARK 3 S31: -0.1102 S32: 0.0591 S33: -0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ARL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-12. REMARK 100 THE PDBE ID CODE IS EBI-52206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50456 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 58.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.5 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.4 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.8 REMARK 200 R MERGE FOR SHELL (I) : 0.48 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.95800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 112.95800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2152 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 207 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASP 207 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 PHE A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 SER A 34 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 LEU B 358 REMARK 465 GLU B 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 TYR B 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 194 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 191 O HOH A 2144 2565 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 28 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 PRO B 187 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 65.74 39.97 REMARK 500 PHE A 177 -94.20 -118.48 REMARK 500 PRO A 190 -175.77 -61.89 REMARK 500 SER A 191 -1.29 71.15 REMARK 500 MET A 234 -4.71 73.42 REMARK 500 GLU B 31 -16.80 75.45 REMARK 500 MET B 57 -138.59 49.63 REMARK 500 ASN B 145 -1.85 79.10 REMARK 500 PHE B 177 -149.71 -96.67 REMARK 500 SER B 191 -71.80 -81.51 REMARK 500 ASP B 193 -60.22 -128.80 REMARK 500 MET B 234 -8.56 66.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 33 SER B 34 -144.68 REMARK 500 ASP B 193 TYR B 194 -146.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 135 24.8 L L OUTSIDE RANGE REMARK 500 ASP A 334 24.5 L L OUTSIDE RANGE REMARK 500 PHE B 177 23.1 L L OUTSIDE RANGE REMARK 500 ASP B 334 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AQN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PESTICIN FROM Y. PESTIS REMARK 900 RELATED ID: 4ARJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PESTICIN (TRANSLOCATION AND REMARK 900 RECEPTOR BINDING DOMAIN) FROM Y. PESTIS AND T4- REMARK 900 LYSOZYME CHIMERA REMARK 900 RELATED ID: 4ARM RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT REMARK 900 RELATED ID: 4ARP RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN E178A MUTANT REMARK 900 RELATED ID: 4ARQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN S89C, S285C MUTANT DBREF 4ARL A 1 357 UNP Q57159 Q57159_YERPE 1 357 DBREF 4ARL B 1 357 UNP Q57159 Q57159_YERPE 1 357 SEQADV 4ARL LEU A 358 UNP Q57159 EXPRESSION TAG SEQADV 4ARL GLU A 359 UNP Q57159 EXPRESSION TAG SEQADV 4ARL ALA A 207 UNP Q57159 ASP 207 ENGINEERED MUTATION SEQADV 4ARL LEU B 358 UNP Q57159 EXPRESSION TAG SEQADV 4ARL GLU B 359 UNP Q57159 EXPRESSION TAG SEQADV 4ARL ALA B 207 UNP Q57159 ASP 207 ENGINEERED MUTATION SEQRES 1 A 359 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 A 359 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 A 359 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 A 359 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 A 359 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 A 359 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 A 359 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 A 359 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 A 359 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 A 359 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 A 359 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 A 359 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 A 359 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 A 359 ASP ILE PHE SER SER ASN GLY PHE GLU GLY PHE ASN PRO SEQRES 15 A 359 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 A 359 ASN SER THR GLY VAL THR PHE GLY SER GLY VAL ALA LEU SEQRES 17 A 359 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 A 359 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 A 359 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 A 359 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 A 359 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 A 359 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE SER ASP SEQRES 23 A 359 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 A 359 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 A 359 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 A 359 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 A 359 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 A 359 ASP SER GLY LEU LEU LYS LEU GLU SEQRES 1 B 359 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 B 359 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 B 359 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 B 359 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 B 359 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 B 359 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 B 359 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 B 359 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 B 359 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 B 359 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 B 359 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 B 359 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 B 359 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 B 359 ASP ILE PHE SER SER ASN GLY PHE GLU GLY PHE ASN PRO SEQRES 15 B 359 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 B 359 ASN SER THR GLY VAL THR PHE GLY SER GLY VAL ALA LEU SEQRES 17 B 359 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 B 359 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 B 359 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 B 359 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 B 359 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 B 359 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE SER ASP SEQRES 23 B 359 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 B 359 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 B 359 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 B 359 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 B 359 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 B 359 ASP SER GLY LEU LEU LYS LEU GLU FORMUL 3 HOH *283(H2 O) HELIX 1 1 THR A 116 LYS A 126 1 11 HELIX 2 2 ASN A 129 ASN A 135 1 7 HELIX 3 3 ASN A 152 VAL A 164 1 13 HELIX 4 4 ASP A 168 SER A 173 1 6 HELIX 5 5 SER A 212 ASP A 219 1 8 HELIX 6 6 PRO A 222 LEU A 229 1 8 HELIX 7 7 ARG A 236 ALA A 247 1 12 HELIX 8 8 SER A 252 ALA A 278 1 27 HELIX 9 9 ARG A 283 LEU A 287 5 5 HELIX 10 10 PRO A 288 GLY A 303 1 16 HELIX 11 11 LYS A 305 ALA A 310 1 6 HELIX 12 12 ALA A 310 LYS A 320 1 11 HELIX 13 13 ASP A 321 ASN A 331 1 11 HELIX 14 14 MET A 336 SER A 353 1 18 HELIX 15 15 SER B 34 LEU B 39 5 6 HELIX 16 16 THR B 116 ASP B 125 1 10 HELIX 17 17 LYS B 126 GLU B 128 5 3 HELIX 18 18 ASN B 129 ASN B 135 1 7 HELIX 19 19 ASN B 152 ASN B 165 1 14 HELIX 20 20 ASP B 168 SER B 173 1 6 HELIX 21 21 SER B 212 GLY B 220 1 9 HELIX 22 22 PRO B 222 LEU B 229 1 8 HELIX 23 23 ARG B 236 ALA B 247 1 12 HELIX 24 24 SER B 252 ALA B 278 1 27 HELIX 25 25 ARG B 283 LEU B 287 5 5 HELIX 26 26 PRO B 288 GLY B 303 1 16 HELIX 27 27 LYS B 305 ALA B 310 1 6 HELIX 28 28 ALA B 310 ALA B 319 1 10 HELIX 29 29 ASP B 321 ILE B 332 1 12 HELIX 30 30 MET B 336 SER B 353 1 18 SHEET 1 AA 2 LEU A 23 SER A 24 0 SHEET 2 AA 2 VAL A 105 GLY A 115 -1 O MET A 111 N LEU A 23 SHEET 1 AB 7 HIS A 41 ASP A 44 0 SHEET 2 AB 7 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AB 7 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AB 7 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AB 7 ILE A 94 LYS A 102 -1 O ILE A 94 N GLY A 115 SHEET 6 AB 7 ARG A 137 VAL A 141 -1 O ARG A 137 N GLY A 99 SHEET 7 AB 7 VAL A 147 PHE A 150 -1 O ILE A 148 N ILE A 140 SHEET 1 AC 5 HIS A 41 ASP A 44 0 SHEET 2 AC 5 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AC 5 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AC 5 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AC 5 LEU A 23 SER A 24 -1 O LEU A 23 N LEU A 113 SHEET 1 AD 3 ASN A 181 HIS A 185 0 SHEET 2 AD 3 THR A 201 GLY A 203 -1 O THR A 201 N HIS A 185 SHEET 3 AD 3 VAL A 206 ALA A 207 -1 O VAL A 206 N PHE A 202 SHEET 1 BA 2 LEU B 23 SER B 24 0 SHEET 2 BA 2 VAL B 105 GLY B 115 -1 O MET B 111 N LEU B 23 SHEET 1 BB 7 HIS B 41 ASP B 44 0 SHEET 2 BB 7 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BB 7 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BB 7 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BB 7 ILE B 94 LYS B 102 -1 O ILE B 94 N GLY B 115 SHEET 6 BB 7 ARG B 137 VAL B 141 -1 O ARG B 137 N GLY B 99 SHEET 7 BB 7 VAL B 147 PHE B 150 -1 O ILE B 148 N ILE B 140 SHEET 1 BC 5 HIS B 41 ASP B 44 0 SHEET 2 BC 5 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BC 5 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BC 5 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BC 5 LEU B 23 SER B 24 -1 O LEU B 23 N LEU B 113 SHEET 1 BD 3 ASN B 181 HIS B 185 0 SHEET 2 BD 3 THR B 201 GLY B 203 -1 O THR B 201 N HIS B 185 SHEET 3 BD 3 VAL B 206 ALA B 207 -1 O VAL B 206 N PHE B 202 CISPEP 1 VAL A 13 PRO A 14 0 -19.86 CISPEP 2 SER A 192 ASP A 193 0 12.07 CISPEP 3 SER B 49 ASN B 50 0 -3.45 CRYST1 35.323 92.620 225.916 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004426 0.00000