HEADER TOXIN 25-APR-12 4ARM TITLE STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PESTICIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PESTICIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: T7, PET; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 11 ORGANISM_TAXID: 632; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: T7, PET KEYWDS TOXIN, MURAMIDASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,S.I.PATZER,R.ALBRECHT,V.BRAUN REVDAT 4 08-MAY-24 4ARM 1 REMARK REVDAT 3 18-JUL-12 4ARM 1 JRNL REVDAT 2 30-MAY-12 4ARM 1 JRNL REVDAT 1 02-MAY-12 4ARM 0 JRNL AUTH S.I.PATZER,R.ALBRECHT,V.BRAUN,K.ZETH JRNL TITL STRUCTURE AND MECHANISTIC STUDIES OF PESTICIN, A BACTERIAL JRNL TITL 2 HOMOLOG OF PHAGE LYSOZYMES. JRNL REF J.BIOL.CHEM. V. 287 23381 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22593569 JRNL DOI 10.1074/JBC.M112.362913 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 50034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8195 - 5.8488 0.99 1969 149 0.2157 0.1959 REMARK 3 2 5.8488 - 4.6441 0.99 1888 142 0.1731 0.1922 REMARK 3 3 4.6441 - 4.0575 0.99 1896 143 0.1429 0.1553 REMARK 3 4 4.0575 - 3.6867 0.99 1872 140 0.1550 0.1797 REMARK 3 5 3.6867 - 3.4226 0.99 1853 140 0.1610 0.1962 REMARK 3 6 3.4226 - 3.2209 0.99 1869 141 0.1596 0.2084 REMARK 3 7 3.2209 - 3.0596 1.00 1866 140 0.1670 0.2072 REMARK 3 8 3.0596 - 2.9264 1.00 1856 140 0.1713 0.2554 REMARK 3 9 2.9264 - 2.8138 1.00 1882 141 0.1795 0.2056 REMARK 3 10 2.8138 - 2.7167 1.00 1824 138 0.1713 0.2339 REMARK 3 11 2.7167 - 2.6318 0.99 1866 140 0.1762 0.2147 REMARK 3 12 2.6318 - 2.5566 1.00 1851 140 0.1808 0.2459 REMARK 3 13 2.5566 - 2.4893 1.00 1899 143 0.1696 0.2073 REMARK 3 14 2.4893 - 2.4285 1.00 1812 136 0.1759 0.2071 REMARK 3 15 2.4285 - 2.3733 1.00 1866 140 0.1783 0.2391 REMARK 3 16 2.3733 - 2.3228 1.00 1892 143 0.1809 0.2294 REMARK 3 17 2.3228 - 2.2764 1.00 1828 137 0.1836 0.2205 REMARK 3 18 2.2764 - 2.2334 1.00 1863 141 0.1911 0.2367 REMARK 3 19 2.2334 - 2.1935 0.99 1833 138 0.1908 0.2777 REMARK 3 20 2.1935 - 2.1564 1.00 1862 140 0.1946 0.2621 REMARK 3 21 2.1564 - 2.1216 1.00 1820 137 0.1909 0.2825 REMARK 3 22 2.1216 - 2.0889 1.00 1881 141 0.1916 0.2202 REMARK 3 23 2.0889 - 2.0582 1.00 1814 137 0.1958 0.2571 REMARK 3 24 2.0582 - 2.0292 1.00 1886 142 0.2029 0.2414 REMARK 3 25 2.0292 - 2.0018 0.96 1783 134 0.2406 0.2962 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 51.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85470 REMARK 3 B22 (A**2) : -0.77290 REMARK 3 B33 (A**2) : -2.08170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.63460 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5675 REMARK 3 ANGLE : 0.826 7678 REMARK 3 CHIRALITY : 0.062 843 REMARK 3 PLANARITY : 0.003 1010 REMARK 3 DIHEDRAL : 12.905 2148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 14:58) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4628 -0.3112 -9.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.4767 T22: 0.6088 REMARK 3 T33: 0.1457 T12: -0.1021 REMARK 3 T13: -0.0414 T23: 0.0841 REMARK 3 L TENSOR REMARK 3 L11: 0.1952 L22: 1.3388 REMARK 3 L33: 1.4017 L12: -0.2564 REMARK 3 L13: -0.3823 L23: -0.0828 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: -0.5204 S13: -0.0255 REMARK 3 S21: 0.3504 S22: 0.0491 S23: 0.0106 REMARK 3 S31: 0.2049 S32: -0.7693 S33: 0.0644 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 59:75) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6734 -6.1032 -6.1716 REMARK 3 T TENSOR REMARK 3 T11: 0.6086 T22: 0.6828 REMARK 3 T33: 0.2503 T12: 0.0523 REMARK 3 T13: 0.0309 T23: 0.0972 REMARK 3 L TENSOR REMARK 3 L11: 2.9862 L22: 2.5839 REMARK 3 L33: 2.2510 L12: -0.2835 REMARK 3 L13: 1.2453 L23: -0.9310 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.5892 S13: -0.6204 REMARK 3 S21: 0.5120 S22: -0.0387 S23: -0.0724 REMARK 3 S31: 0.7930 S32: 0.2039 S33: -0.0617 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 76:163) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1417 6.0283 -19.0677 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.4639 REMARK 3 T33: 0.1229 T12: -0.0357 REMARK 3 T13: -0.0247 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 0.5891 L22: 0.9301 REMARK 3 L33: 1.5559 L12: 0.1125 REMARK 3 L13: 0.8110 L23: 0.2967 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: -0.1314 S13: 0.1281 REMARK 3 S21: 0.1527 S22: 0.1357 S23: -0.1512 REMARK 3 S31: -0.2222 S32: 0.7173 S33: 0.0693 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 164:252) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4657 18.7090 -56.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.1061 T22: 0.0664 REMARK 3 T33: 0.1234 T12: -0.0023 REMARK 3 T13: 0.0262 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.7581 L22: 1.5444 REMARK 3 L33: 0.8978 L12: -0.0001 REMARK 3 L13: 0.4553 L23: -0.4708 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: 0.0770 S13: -0.0222 REMARK 3 S21: -0.1186 S22: 0.0381 S23: -0.0588 REMARK 3 S31: 0.0223 S32: 0.1128 S33: -0.0519 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 253:336) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8364 1.2434 -47.1258 REMARK 3 T TENSOR REMARK 3 T11: 0.1053 T22: 0.0824 REMARK 3 T33: 0.0989 T12: -0.0143 REMARK 3 T13: 0.0010 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.2514 L22: 1.2679 REMARK 3 L33: 0.5372 L12: 0.1870 REMARK 3 L13: -0.1153 L23: 0.1275 REMARK 3 S TENSOR REMARK 3 S11: -0.0129 S12: 0.0543 S13: -0.0365 REMARK 3 S21: -0.0197 S22: 0.0234 S23: 0.0299 REMARK 3 S31: 0.0432 S32: 0.0014 S33: -0.0263 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 337:359) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0235 -0.6990 -40.6703 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1066 REMARK 3 T33: 0.1300 T12: 0.0119 REMARK 3 T13: -0.0528 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.8951 L22: 1.6983 REMARK 3 L33: 2.2873 L12: -0.2428 REMARK 3 L13: -0.0204 L23: -0.5051 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: -0.2654 S13: 0.1069 REMARK 3 S21: 0.2615 S22: 0.1423 S23: -0.2741 REMARK 3 S31: 0.0932 S32: 0.0604 S33: 0.0518 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 13:75) REMARK 3 ORIGIN FOR THE GROUP (A): -48.6989 15.1892 -8.1078 REMARK 3 T TENSOR REMARK 3 T11: 0.4084 T22: 0.6190 REMARK 3 T33: 0.2787 T12: 0.0380 REMARK 3 T13: 0.0243 T23: -0.1166 REMARK 3 L TENSOR REMARK 3 L11: 0.6718 L22: 1.2004 REMARK 3 L33: 0.9389 L12: -0.2844 REMARK 3 L13: -0.7592 L23: 0.5096 REMARK 3 S TENSOR REMARK 3 S11: -0.2134 S12: -0.5305 S13: 0.1544 REMARK 3 S21: 0.3465 S22: 0.0326 S23: 0.0393 REMARK 3 S31: 0.2361 S32: -0.2052 S33: 0.1027 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 76:164) REMARK 3 ORIGIN FOR THE GROUP (A): -35.8982 14.9684 -19.9939 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.3593 REMARK 3 T33: 0.1723 T12: 0.0162 REMARK 3 T13: 0.0184 T23: -0.0838 REMARK 3 L TENSOR REMARK 3 L11: 0.9306 L22: 1.3985 REMARK 3 L33: 1.5364 L12: -0.0869 REMARK 3 L13: -0.4398 L23: 0.7683 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: -0.3969 S13: 0.2967 REMARK 3 S21: 0.2364 S22: 0.0183 S23: -0.1387 REMARK 3 S31: -0.2537 S32: 0.1527 S33: -0.0876 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 165:277) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6527 17.2810 -55.0542 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.1030 REMARK 3 T33: 0.1090 T12: 0.0107 REMARK 3 T13: 0.0232 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.8083 L22: 0.8058 REMARK 3 L33: 1.1816 L12: 0.0183 REMARK 3 L13: 0.3896 L23: -0.3537 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0181 S13: 0.1151 REMARK 3 S21: 0.0148 S22: 0.0275 S23: 0.0605 REMARK 3 S31: -0.1703 S32: -0.0855 S33: -0.0225 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 278:359) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9669 -0.8234 -42.9278 REMARK 3 T TENSOR REMARK 3 T11: 0.0944 T22: 0.1187 REMARK 3 T33: 0.1383 T12: -0.0037 REMARK 3 T13: -0.0283 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.6337 L22: 1.2971 REMARK 3 L33: 0.8739 L12: 0.0928 REMARK 3 L13: -0.3578 L23: 0.2886 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0942 S13: -0.1350 REMARK 3 S21: 0.0309 S22: 0.1112 S23: -0.1661 REMARK 3 S31: 0.2597 S32: 0.0033 S33: -0.1061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ARM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50034 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.62400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 201 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 201 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2197 O HOH B 2198 1.85 REMARK 500 O HOH B 2285 O HOH B 2286 1.95 REMARK 500 O HOH A 2014 O HOH A 2070 1.95 REMARK 500 O HOH A 2052 O HOH A 2057 1.97 REMARK 500 O LEU A 358 O HOH A 2315 1.99 REMARK 500 O HOH A 2141 O HOH A 2249 2.02 REMARK 500 O HOH A 2017 O HOH A 2022 2.07 REMARK 500 O ASP B 334 O HOH B 2300 2.07 REMARK 500 O HOH B 2272 O HOH B 2273 2.10 REMARK 500 OG SER A 353 O HOH A 2349 2.14 REMARK 500 NE2 GLN B 100 O HOH B 2078 2.15 REMARK 500 O HOH B 2040 O HOH B 2090 2.15 REMARK 500 OD2 ASP A 230 O HOH A 2213 2.16 REMARK 500 O HOH B 2061 O HOH B 2062 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2247 O HOH A 2314 1565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 34.29 76.34 REMARK 500 ASN A 33 -10.37 74.83 REMARK 500 ALA A 38 -4.40 73.47 REMARK 500 SER A 49 131.53 -172.44 REMARK 500 PHE A 51 68.94 -156.11 REMARK 500 MET A 57 -130.28 53.20 REMARK 500 LYS A 102 135.59 -170.40 REMARK 500 PHE A 177 -115.06 -122.02 REMARK 500 PRO A 187 46.82 -85.91 REMARK 500 ALA A 310 67.59 -152.69 REMARK 500 ASP A 334 -1.03 -158.69 REMARK 500 LEU A 358 -77.30 -62.75 REMARK 500 ASN B 33 -163.87 -120.60 REMARK 500 PHE B 51 59.43 -148.02 REMARK 500 PHE B 177 -112.75 -122.92 REMARK 500 PRO B 187 43.12 -79.41 REMARK 500 MET B 234 -7.12 73.16 REMARK 500 ASP B 334 -1.16 -151.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2112 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B2053 DISTANCE = 5.94 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AQN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PESTICIN FROM Y. PESTIS REMARK 900 RELATED ID: 4ARL RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN D207A MUTANT DBREF 4ARM A 1 357 UNP Q57159 Q57159_YERPE 1 357 DBREF 4ARM B 1 357 UNP Q57159 Q57159_YERPE 1 357 SEQADV 4ARM ALA A 201 UNP Q57159 THR 201 ENGINEERED MUTATION SEQADV 4ARM LEU A 358 UNP Q57159 EXPRESSION TAG SEQADV 4ARM HIS A 359 UNP Q57159 EXPRESSION TAG SEQADV 4ARM ALA B 201 UNP Q57159 THR 201 ENGINEERED MUTATION SEQADV 4ARM LEU B 358 UNP Q57159 EXPRESSION TAG SEQADV 4ARM GLU B 359 UNP Q57159 EXPRESSION TAG SEQRES 1 A 359 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 A 359 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 A 359 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 A 359 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 A 359 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 A 359 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 A 359 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 A 359 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 A 359 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 A 359 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 A 359 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 A 359 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 A 359 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 A 359 ASP ILE PHE SER SER ASN GLY PHE GLU GLY PHE ASN PRO SEQRES 15 A 359 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 A 359 ASN SER THR GLY VAL ALA PHE GLY SER GLY VAL ASP LEU SEQRES 17 A 359 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 A 359 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 A 359 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 A 359 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 A 359 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 A 359 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE SER ASP SEQRES 23 A 359 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 A 359 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 A 359 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 A 359 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 A 359 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 A 359 ASP SER GLY LEU LEU LYS LEU HIS SEQRES 1 B 359 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 B 359 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 B 359 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 B 359 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 B 359 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 B 359 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 B 359 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 B 359 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 B 359 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 B 359 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 B 359 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 B 359 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 B 359 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 B 359 ASP ILE PHE SER SER ASN GLY PHE GLU GLY PHE ASN PRO SEQRES 15 B 359 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 B 359 ASN SER THR GLY VAL ALA PHE GLY SER GLY VAL ASP LEU SEQRES 17 B 359 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 B 359 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 B 359 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 B 359 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 B 359 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 B 359 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE SER ASP SEQRES 23 B 359 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 B 359 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 B 359 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 B 359 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 B 359 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 B 359 ASP SER GLY LEU LEU LYS LEU GLU FORMUL 3 HOH *667(H2 O) HELIX 1 1 THR A 116 ASP A 125 1 10 HELIX 2 2 LYS A 126 GLU A 128 5 3 HELIX 3 3 ASN A 129 ASN A 135 1 7 HELIX 4 4 ASN A 152 VAL A 164 1 13 HELIX 5 5 ASP A 168 SER A 173 1 6 HELIX 6 6 SER A 212 ASP A 219 1 8 HELIX 7 7 PRO A 222 LEU A 229 1 8 HELIX 8 8 GLY A 237 ALA A 247 1 11 HELIX 9 9 SER A 252 ALA A 278 1 27 HELIX 10 10 ARG A 283 LEU A 287 5 5 HELIX 11 11 PRO A 288 GLY A 303 1 16 HELIX 12 12 LYS A 305 ALA A 310 1 6 HELIX 13 13 ALA A 310 ILE A 318 1 9 HELIX 14 14 ASP A 321 ILE A 332 1 12 HELIX 15 15 MET A 336 SER A 353 1 18 HELIX 16 16 THR B 116 ASP B 125 1 10 HELIX 17 17 LYS B 126 GLU B 128 5 3 HELIX 18 18 ASN B 129 ASN B 135 1 7 HELIX 19 19 ASN B 152 ASN B 165 1 14 HELIX 20 20 ASP B 168 SER B 173 1 6 HELIX 21 21 TYR B 194 THR B 198 5 5 HELIX 22 22 SER B 212 ASP B 219 1 8 HELIX 23 23 PRO B 222 LEU B 229 1 8 HELIX 24 24 GLY B 237 ALA B 247 1 11 HELIX 25 25 SER B 252 ALA B 278 1 27 HELIX 26 26 ARG B 283 LEU B 287 5 5 HELIX 27 27 PRO B 288 GLY B 303 1 16 HELIX 28 28 LYS B 305 ALA B 310 1 6 HELIX 29 29 ALA B 310 LYS B 320 1 11 HELIX 30 30 ASP B 321 ILE B 332 1 12 HELIX 31 31 MET B 336 SER B 353 1 18 SHEET 1 AA 2 LEU A 23 SER A 24 0 SHEET 2 AA 2 VAL A 105 GLY A 115 -1 O MET A 111 N LEU A 23 SHEET 1 AB 7 HIS A 41 ASP A 44 0 SHEET 2 AB 7 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AB 7 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AB 7 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AB 7 ILE A 94 LYS A 102 -1 O ILE A 94 N GLY A 115 SHEET 6 AB 7 ARG A 137 VAL A 141 -1 O ARG A 137 N GLY A 99 SHEET 7 AB 7 VAL A 147 PHE A 150 -1 O ILE A 148 N ILE A 140 SHEET 1 AC 5 HIS A 41 ASP A 44 0 SHEET 2 AC 5 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AC 5 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AC 5 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AC 5 LEU A 23 SER A 24 -1 O LEU A 23 N LEU A 113 SHEET 1 AD 3 ASN A 181 HIS A 185 0 SHEET 2 AD 3 ALA A 201 GLY A 203 -1 O ALA A 201 N HIS A 185 SHEET 3 AD 3 VAL A 206 ASP A 207 -1 O VAL A 206 N PHE A 202 SHEET 1 BA 2 LEU B 23 SER B 24 0 SHEET 2 BA 2 VAL B 105 GLY B 115 -1 O MET B 111 N LEU B 23 SHEET 1 BB 7 HIS B 41 ASP B 44 0 SHEET 2 BB 7 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BB 7 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BB 7 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BB 7 ILE B 94 LYS B 102 -1 O ILE B 94 N GLY B 115 SHEET 6 BB 7 ARG B 137 VAL B 141 -1 O ARG B 137 N GLY B 99 SHEET 7 BB 7 VAL B 147 PHE B 150 -1 O ILE B 148 N ILE B 140 SHEET 1 BC 5 HIS B 41 ASP B 44 0 SHEET 2 BC 5 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BC 5 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BC 5 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BC 5 LEU B 23 SER B 24 -1 O LEU B 23 N LEU B 113 SHEET 1 BD 3 ASN B 181 HIS B 185 0 SHEET 2 BD 3 ALA B 201 GLY B 203 -1 O ALA B 201 N HIS B 185 SHEET 3 BD 3 VAL B 206 ASP B 207 -1 O VAL B 206 N PHE B 202 CISPEP 1 SER A 49 ASN A 50 0 0.92 CISPEP 2 VAL B 13 PRO B 14 0 5.49 CRYST1 65.623 43.248 133.201 90.00 99.36 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015239 0.000000 0.002512 0.00000 SCALE2 0.000000 0.023122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007609 0.00000