HEADER HYDROLASE 25-APR-12 4ARP TITLE STRUCTURE OF THE INACTIVE PESTICIN E178A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PESTICIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS HYDROLASE, MURAMIDASE, INACTIVE MUTANT EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,S.I.PATZER,R.ALBRECHT,V.BRAUN REVDAT 4 20-DEC-23 4ARP 1 REMARK REVDAT 3 18-JUL-12 4ARP 1 JRNL REVDAT 2 30-MAY-12 4ARP 1 JRNL REVDAT 1 02-MAY-12 4ARP 0 JRNL AUTH S.I.PATZER,R.ALBRECHT,V.BRAUN,K.ZETH JRNL TITL STRUCTURE AND MECHANISTIC STUDIES OF PESTICIN, A BACTERIAL JRNL TITL 2 HOMOLOG OF PHAGE LYSOZYMES. JRNL REF J.BIOL.CHEM. V. 287 23381 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22593569 JRNL DOI 10.1074/JBC.M112.362913 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.2266 - 5.6606 1.00 2833 150 0.2222 0.2258 REMARK 3 2 5.6606 - 4.4931 1.00 2706 143 0.1716 0.2316 REMARK 3 3 4.4931 - 3.9251 1.00 2676 141 0.1764 0.2326 REMARK 3 4 3.9251 - 3.5663 1.00 2640 139 0.2002 0.2364 REMARK 3 5 3.5663 - 3.3107 1.00 2633 139 0.2076 0.2345 REMARK 3 6 3.3107 - 3.1155 1.00 2623 138 0.2144 0.2648 REMARK 3 7 3.1155 - 2.9594 1.00 2602 137 0.2199 0.2884 REMARK 3 8 2.9594 - 2.8306 1.00 2611 138 0.2221 0.2848 REMARK 3 9 2.8306 - 2.7216 1.00 2620 138 0.2266 0.2753 REMARK 3 10 2.7216 - 2.6277 1.00 2554 135 0.2199 0.2910 REMARK 3 11 2.6277 - 2.5455 1.00 2637 137 0.2394 0.2741 REMARK 3 12 2.5455 - 2.4728 1.00 2548 135 0.2404 0.3079 REMARK 3 13 2.4728 - 2.4077 1.00 2619 138 0.2568 0.2910 REMARK 3 14 2.4077 - 2.3489 1.00 2562 135 0.2787 0.3670 REMARK 3 15 2.3489 - 2.2955 0.94 2449 129 0.3171 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 62.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.37050 REMARK 3 B22 (A**2) : 14.58220 REMARK 3 B33 (A**2) : -7.21170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 5695 REMARK 3 ANGLE : 1.177 7417 REMARK 3 CHIRALITY : 0.086 820 REMARK 3 PLANARITY : 0.005 969 REMARK 3 DIHEDRAL : 14.360 2057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 13:152) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6497 -8.8716 -1.0529 REMARK 3 T TENSOR REMARK 3 T11: 0.7846 T22: 1.0584 REMARK 3 T33: -0.0324 T12: 0.1385 REMARK 3 T13: 0.0351 T23: -0.3449 REMARK 3 L TENSOR REMARK 3 L11: 0.0592 L22: 0.0957 REMARK 3 L33: 0.1442 L12: -0.0933 REMARK 3 L13: -0.1147 L23: 0.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.1069 S12: 0.2750 S13: -0.0256 REMARK 3 S21: -0.4924 S22: 0.2152 S23: -0.0037 REMARK 3 S31: 0.2439 S32: 0.1848 S33: 0.0331 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 153:357) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8160 5.6703 32.6890 REMARK 3 T TENSOR REMARK 3 T11: 0.2161 T22: 0.2455 REMARK 3 T33: 0.2531 T12: 0.0230 REMARK 3 T13: 0.0058 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.5304 L22: 0.0476 REMARK 3 L33: 0.2715 L12: -0.1912 REMARK 3 L13: 0.1113 L23: -0.0568 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.0823 S13: 0.0594 REMARK 3 S21: 0.0038 S22: -0.0063 S23: 0.0092 REMARK 3 S31: -0.0261 S32: 0.0534 S33: 0.0095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 13:37) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5223 21.4173 53.8058 REMARK 3 T TENSOR REMARK 3 T11: 0.7796 T22: 0.8420 REMARK 3 T33: 0.5563 T12: -0.0498 REMARK 3 T13: 0.0901 T23: 0.1494 REMARK 3 L TENSOR REMARK 3 L11: 0.5224 L22: 0.5608 REMARK 3 L33: 0.0950 L12: -0.0168 REMARK 3 L13: 0.2209 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: 0.1221 S12: -0.0156 S13: -0.0436 REMARK 3 S21: 0.0061 S22: 0.0708 S23: 0.0618 REMARK 3 S31: 0.1500 S32: 0.1138 S33: -0.0855 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 38:65) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6394 23.4833 55.6463 REMARK 3 T TENSOR REMARK 3 T11: 0.9051 T22: 0.4196 REMARK 3 T33: 0.3067 T12: 0.1225 REMARK 3 T13: 0.0205 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 0.3848 L22: 0.0108 REMARK 3 L33: 0.1606 L12: -0.0034 REMARK 3 L13: 0.2412 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.1824 S13: -0.0524 REMARK 3 S21: 0.0789 S22: -0.0251 S23: -0.0239 REMARK 3 S31: -0.0126 S32: 0.0205 S33: -0.0026 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 66:75) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6079 31.6498 61.8859 REMARK 3 T TENSOR REMARK 3 T11: 1.0211 T22: 0.7559 REMARK 3 T33: 0.7263 T12: -0.0086 REMARK 3 T13: -0.1465 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.0812 REMARK 3 L33: 0.0953 L12: 0.0152 REMARK 3 L13: 0.0171 L23: -0.0409 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0025 S13: -0.0015 REMARK 3 S21: -0.0251 S22: 0.0144 S23: 0.0204 REMARK 3 S31: 0.0175 S32: -0.0065 S33: -0.0104 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 76:165) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9011 35.8167 45.8422 REMARK 3 T TENSOR REMARK 3 T11: 0.5086 T22: 0.4163 REMARK 3 T33: 0.2765 T12: 0.0464 REMARK 3 T13: 0.0657 T23: 0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.8264 L22: 0.4892 REMARK 3 L33: 0.0192 L12: 0.0575 REMARK 3 L13: 0.0626 L23: -0.0303 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.4414 S13: -0.0190 REMARK 3 S21: 0.4796 S22: 0.1448 S23: 0.1902 REMARK 3 S31: -0.2292 S32: -0.2067 S33: -0.0244 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 166:182) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4228 44.2490 19.6058 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.2631 REMARK 3 T33: 0.2246 T12: -0.0030 REMARK 3 T13: 0.0129 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 0.2909 L22: 0.2840 REMARK 3 L33: 0.5282 L12: 0.0686 REMARK 3 L13: -0.3609 L23: 0.0572 REMARK 3 S TENSOR REMARK 3 S11: 0.0909 S12: -0.0009 S13: 0.0779 REMARK 3 S21: 0.0366 S22: -0.0595 S23: 0.0331 REMARK 3 S31: -0.0160 S32: -0.1683 S33: -0.0026 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 183:200) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2272 41.2583 -0.3025 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.2664 REMARK 3 T33: 0.1395 T12: -0.0768 REMARK 3 T13: 0.0417 T23: -0.0785 REMARK 3 L TENSOR REMARK 3 L11: 0.0681 L22: 0.0423 REMARK 3 L33: 0.1049 L12: 0.0008 REMARK 3 L13: -0.0557 L23: -0.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: -0.0462 S13: 0.0031 REMARK 3 S21: -0.0661 S22: 0.0802 S23: -0.0576 REMARK 3 S31: -0.0825 S32: 0.0319 S33: -0.0146 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 201:236) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5699 28.4730 9.9306 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.2152 REMARK 3 T33: 0.2033 T12: -0.0182 REMARK 3 T13: -0.0118 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.0625 L22: 0.0419 REMARK 3 L33: 0.2174 L12: 0.0151 REMARK 3 L13: 0.1070 L23: 0.0552 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: -0.0273 S13: -0.0469 REMARK 3 S21: 0.0007 S22: 0.0304 S23: -0.0460 REMARK 3 S31: -0.0213 S32: 0.0663 S33: -0.0487 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 237:252) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0793 37.8998 0.8676 REMARK 3 T TENSOR REMARK 3 T11: 0.2133 T22: 0.3513 REMARK 3 T33: 0.2249 T12: 0.0091 REMARK 3 T13: 0.0026 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.1896 L22: 0.0783 REMARK 3 L33: 0.3484 L12: 0.0625 REMARK 3 L13: 0.2550 L23: 0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.1284 S13: 0.0327 REMARK 3 S21: -0.0570 S22: 0.0341 S23: 0.0611 REMARK 3 S31: -0.0335 S32: 0.0005 S33: -0.0021 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 253:277) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2390 33.8047 19.1113 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.2997 REMARK 3 T33: 0.2043 T12: -0.0004 REMARK 3 T13: -0.0160 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.3645 L22: 0.1177 REMARK 3 L33: 0.0165 L12: 0.0014 REMARK 3 L13: 0.0040 L23: 0.0339 REMARK 3 S TENSOR REMARK 3 S11: 0.0597 S12: -0.0958 S13: -0.0052 REMARK 3 S21: -0.0066 S22: -0.0684 S23: -0.0532 REMARK 3 S31: -0.0210 S32: -0.1208 S33: -0.0023 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 278:310) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6652 39.8370 18.4298 REMARK 3 T TENSOR REMARK 3 T11: 0.0804 T22: 0.1896 REMARK 3 T33: 0.1312 T12: -0.0110 REMARK 3 T13: -0.0066 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.2551 L22: 0.1664 REMARK 3 L33: 0.8984 L12: 0.0070 REMARK 3 L13: 0.1519 L23: -0.1734 REMARK 3 S TENSOR REMARK 3 S11: -0.0555 S12: 0.2075 S13: -0.0845 REMARK 3 S21: 0.0436 S22: -0.0600 S23: 0.0323 REMARK 3 S31: -0.0821 S32: 0.1248 S33: 0.0403 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 311:336) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7972 48.6405 14.9169 REMARK 3 T TENSOR REMARK 3 T11: 0.1272 T22: 0.3491 REMARK 3 T33: 0.2238 T12: -0.0248 REMARK 3 T13: 0.0139 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0530 L22: 0.1935 REMARK 3 L33: 0.1629 L12: -0.0362 REMARK 3 L13: 0.0880 L23: -0.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 0.1927 S13: 0.0105 REMARK 3 S21: -0.0909 S22: -0.0491 S23: -0.1523 REMARK 3 S31: 0.0298 S32: 0.0696 S33: 0.0242 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 337:357) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2299 51.8760 22.3216 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1798 REMARK 3 T33: 0.2249 T12: 0.0057 REMARK 3 T13: -0.0206 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 0.1715 L22: 0.1593 REMARK 3 L33: 0.3495 L12: -0.0635 REMARK 3 L13: 0.2265 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: 0.0028 S13: 0.1646 REMARK 3 S21: 0.0711 S22: -0.0954 S23: 0.0158 REMARK 3 S31: -0.0484 S32: -0.0368 S33: 0.0831 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ARP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41466 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 79.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.100 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4AQN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.32050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.17950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.91450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.17950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.32050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.91450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 178 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 178 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 PHE A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 SER A 34 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 PHE B 30 REMARK 465 GLU B 31 REMARK 465 ALA B 32 REMARK 465 ASN B 33 REMARK 465 SER B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 ASN B 29 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 311 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 -69.27 -129.92 REMARK 500 MET A 57 -126.01 57.33 REMARK 500 MET A 111 -60.08 -98.61 REMARK 500 PHE A 177 -90.13 -119.49 REMARK 500 SER A 188 -147.97 55.34 REMARK 500 ASN A 189 171.84 170.07 REMARK 500 MET A 234 -1.85 74.91 REMARK 500 ALA B 15 156.75 176.96 REMARK 500 PRO B 28 -176.51 -61.51 REMARK 500 SER B 49 161.98 178.81 REMARK 500 MET B 57 -123.02 59.58 REMARK 500 PHE B 177 -95.11 -120.93 REMARK 500 MET B 234 -4.39 73.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2188 DISTANCE = 9.00 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AQN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PESTICIN FROM Y. PESTIS REMARK 900 RELATED ID: 4ARL RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN D207A MUTANT REMARK 900 RELATED ID: 4ARM RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT REMARK 900 RELATED ID: 4ARJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PESTICIN (TRANSLOCATION AND RECEPTOR BINDING REMARK 900 DOMAIN) FROM Y. PESTIS AND T4- LYSOZYME CHIMERA REMARK 900 RELATED ID: 4ARQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT DBREF 4ARP A 1 357 UNP Q57159 Q57159_YERPE 1 357 DBREF 4ARP B 1 357 UNP Q57159 Q57159_YERPE 1 357 SEQADV 4ARP ALA A 178 UNP Q57159 GLU 178 ENGINEERED MUTATION SEQADV 4ARP ALA B 178 UNP Q57159 GLU 178 ENGINEERED MUTATION SEQRES 1 A 357 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 A 357 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 A 357 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 A 357 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 A 357 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 A 357 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 A 357 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 A 357 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 A 357 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 A 357 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 A 357 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 A 357 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 A 357 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 A 357 ASP ILE PHE SER SER ASN GLY PHE ALA GLY PHE ASN PRO SEQRES 15 A 357 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 A 357 ASN SER THR GLY VAL THR PHE GLY SER GLY VAL ASP LEU SEQRES 17 A 357 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 A 357 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 A 357 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 A 357 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 A 357 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 A 357 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE SER ASP SEQRES 23 A 357 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 A 357 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 A 357 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 A 357 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 A 357 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 A 357 ASP SER GLY LEU LEU LYS SEQRES 1 B 357 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 B 357 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 B 357 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 B 357 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 B 357 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 B 357 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 B 357 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 B 357 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 B 357 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 B 357 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 B 357 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 B 357 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 B 357 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 B 357 ASP ILE PHE SER SER ASN GLY PHE ALA GLY PHE ASN PRO SEQRES 15 B 357 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 B 357 ASN SER THR GLY VAL THR PHE GLY SER GLY VAL ASP LEU SEQRES 17 B 357 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 B 357 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 B 357 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 B 357 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 B 357 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 B 357 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE SER ASP SEQRES 23 B 357 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 B 357 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 B 357 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 B 357 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 B 357 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 B 357 ASP SER GLY LEU LEU LYS FORMUL 3 HOH *304(H2 O) HELIX 1 1 THR A 116 LEU A 124 1 9 HELIX 2 2 ASN A 129 ASN A 136 1 8 HELIX 3 3 ASN A 152 ASN A 165 1 14 HELIX 4 4 ASP A 168 SER A 173 1 6 HELIX 5 5 TYR A 194 THR A 198 5 5 HELIX 6 6 SER A 212 ASP A 219 1 8 HELIX 7 7 PRO A 222 LEU A 229 1 8 HELIX 8 8 GLY A 237 ALA A 247 1 11 HELIX 9 9 SER A 252 ALA A 278 1 27 HELIX 10 10 ARG A 283 LEU A 287 5 5 HELIX 11 11 PRO A 288 GLY A 303 1 16 HELIX 12 12 LYS A 305 ALA A 310 1 6 HELIX 13 13 ALA A 310 LYS A 320 1 11 HELIX 14 14 ASP A 321 ILE A 332 1 12 HELIX 15 15 MET A 336 SER A 353 1 18 HELIX 16 16 THR B 116 ASP B 125 1 10 HELIX 17 17 LYS B 126 GLU B 128 5 3 HELIX 18 18 ASN B 129 ASN B 136 1 8 HELIX 19 19 ASN B 152 VAL B 164 1 13 HELIX 20 20 ASP B 168 SER B 173 1 6 HELIX 21 21 TYR B 194 THR B 198 5 5 HELIX 22 22 SER B 212 ASP B 219 1 8 HELIX 23 23 PRO B 222 LEU B 229 1 8 HELIX 24 24 ARG B 236 ALA B 247 1 12 HELIX 25 25 SER B 252 ALA B 278 1 27 HELIX 26 26 ARG B 283 LEU B 287 5 5 HELIX 27 27 PRO B 288 GLY B 303 1 16 HELIX 28 28 LYS B 305 ALA B 310 1 6 HELIX 29 29 ALA B 310 LYS B 320 1 11 HELIX 30 30 ASP B 321 ASN B 331 1 11 HELIX 31 31 MET B 336 SER B 353 1 18 SHEET 1 AA 2 LEU A 23 SER A 24 0 SHEET 2 AA 2 VAL A 105 GLY A 115 -1 O MET A 111 N LEU A 23 SHEET 1 AB 7 HIS A 41 ASP A 44 0 SHEET 2 AB 7 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AB 7 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AB 7 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AB 7 ILE A 94 LYS A 102 -1 O ILE A 94 N GLY A 115 SHEET 6 AB 7 ARG A 137 VAL A 141 -1 O ARG A 137 N GLY A 99 SHEET 7 AB 7 VAL A 147 PHE A 150 -1 O ILE A 148 N ILE A 140 SHEET 1 AC 5 HIS A 41 ASP A 44 0 SHEET 2 AC 5 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AC 5 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AC 5 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AC 5 LEU A 23 SER A 24 -1 O LEU A 23 N LEU A 113 SHEET 1 AD 3 ASN A 181 HIS A 185 0 SHEET 2 AD 3 THR A 201 GLY A 203 -1 O THR A 201 N HIS A 185 SHEET 3 AD 3 VAL A 206 ASP A 207 -1 O VAL A 206 N PHE A 202 SHEET 1 BA 2 LEU B 23 SER B 24 0 SHEET 2 BA 2 VAL B 105 GLY B 115 -1 O MET B 111 N LEU B 23 SHEET 1 BB 7 HIS B 41 ASP B 44 0 SHEET 2 BB 7 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BB 7 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BB 7 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BB 7 ILE B 94 LYS B 102 -1 O ILE B 94 N GLY B 115 SHEET 6 BB 7 ARG B 137 VAL B 141 -1 O ARG B 137 N GLY B 99 SHEET 7 BB 7 VAL B 147 PHE B 150 -1 O ILE B 148 N ILE B 140 SHEET 1 BC 5 HIS B 41 ASP B 44 0 SHEET 2 BC 5 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BC 5 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BC 5 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BC 5 LEU B 23 SER B 24 -1 O LEU B 23 N LEU B 113 SHEET 1 BD 3 ASN B 181 HIS B 185 0 SHEET 2 BD 3 THR B 201 GLY B 203 -1 O THR B 201 N HIS B 185 SHEET 3 BD 3 VAL B 206 ASP B 207 -1 O VAL B 206 N PHE B 202 CISPEP 1 VAL A 13 PRO A 14 0 3.45 CISPEP 2 SER A 49 ASN A 50 0 11.72 CISPEP 3 ALA B 15 PHE B 16 0 4.62 CISPEP 4 SER B 49 ASN B 50 0 4.58 CRYST1 44.641 127.829 158.359 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022401 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007823 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006315 0.00000