HEADER HYDROLASE 27-APR-12 4ARZ TITLE THE CRYSTAL STRUCTURE OF GTR1P-GTR2P COMPLEXED WITH GTP-GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN GTR1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GTP-BINDING PROTEIN GTR2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPROEXHTA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PPROEXHTA KEYWDS HYDROLASE, GTPASE, CELL GROWTH EXPDTA X-RAY DIFFRACTION AUTHOR J.H.JEONG,Y.G.KIM REVDAT 2 05-SEP-12 4ARZ 1 JRNL REVDAT 1 25-JUL-12 4ARZ 0 JRNL AUTH J.H.JEONG,K.H.LEE,Y.M.KIM,D.H.KIM,B.H.OH,Y.G.KIM JRNL TITL CRYSTAL STRUCTURE OF THE GTR1PGTP-GTR2PGDP COMPLEX REVEALS JRNL TITL 2 LARGE STRUCTURAL REARRANGEMENTS TRIGGERED BY GTP-TO-GDP JRNL TITL 3 CONVERSION JRNL REF J.BIOL.CHEM. V. 287 29648 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22807443 JRNL DOI 10.1074/JBC.C112.384420 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.1 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 14921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2250 REMARK 3 FREE R VALUE : 0.2719 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.5 REMARK 3 FREE R VALUE TEST SET COUNT : 1264 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.143 REMARK 3 B22 (A**2) : 19.268 REMARK 3 B33 (A**2) : -36.411 REMARK 3 B12 (A**2) : 0.000 REMARK 3 B13 (A**2) : 0.000 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.0099 REMARK 3 BOND ANGLES (DEGREES) : 1.695 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.3 REMARK 3 BSOL : 42.4489 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GDP.PAR REMARK 3 PARAMETER FILE 5 : GTP.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOPOL REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOPOL REMARK 3 TOPOLOGY FILE 3 : ION.TOPOL REMARK 3 TOPOLOGY FILE 4 : GDP.TOPOL REMARK 3 TOPOLOGY FILE 5 : GTP.TOPOL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ARZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-12. REMARK 100 THE PDBE ID CODE IS EBI-52254. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97928 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14921 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.1 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.4 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.53 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.4 REMARK 200 R MERGE FOR SHELL (I) : 0.347 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.87950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.87950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.35600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.44850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.35600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.44850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.87950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.35600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.44850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.87950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.35600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.44850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLY A 221 REMARK 465 GLU A 222 REMARK 465 ASN A 223 REMARK 465 SER A 224 REMARK 465 ASN A 225 REMARK 465 GLU A 226 REMARK 465 ASN A 227 REMARK 465 HIS A 228 REMARK 465 ASP A 229 REMARK 465 SER A 230 REMARK 465 SER A 231 REMARK 465 ASP A 232 REMARK 465 ASN A 233 REMARK 465 ASN A 234 REMARK 465 ASN A 235 REMARK 465 VAL A 236 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 GLU B 4 REMARK 465 PRO B 248 REMARK 465 VAL B 249 REMARK 465 LEU B 250 REMARK 465 ARG B 251 REMARK 465 ASN B 252 REMARK 465 SER B 253 REMARK 465 GLN B 254 REMARK 465 LYS B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 ASP B 258 REMARK 465 LYS B 259 REMARK 465 ASP B 260 REMARK 465 ASN B 261 REMARK 465 VAL B 262 REMARK 465 ILE B 263 REMARK 465 ASN B 264 REMARK 465 ALA B 326 REMARK 465 ASN B 327 REMARK 465 ALA B 328 REMARK 465 ARG B 329 REMARK 465 ALA B 330 REMARK 465 SER B 331 REMARK 465 GLN B 332 REMARK 465 ALA B 333 REMARK 465 LYS B 334 REMARK 465 ASN B 335 REMARK 465 SER B 336 REMARK 465 ILE B 337 REMARK 465 GLU B 338 REMARK 465 ASP B 339 REMARK 465 ASP B 340 REMARK 465 VAL B 341 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 288 N - CA - C ANGL. DEV. = 20.0 DEGREES REMARK 500 LEU B 79 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 43 -138.50 57.27 REMARK 500 LEU A 49 114.41 -167.57 REMARK 500 ASP A 66 -49.26 -27.66 REMARK 500 THR A 74 -81.28 -106.76 REMARK 500 LYS A 75 -72.02 -55.23 REMARK 500 SER A 116 65.34 -151.82 REMARK 500 PHE A 156 93.81 -59.40 REMARK 500 PRO A 157 -84.74 -63.21 REMARK 500 GLU A 204 153.36 179.77 REMARK 500 PHE A 213 31.98 71.00 REMARK 500 SER A 219 111.74 -160.98 REMARK 500 ASP A 239 125.07 -38.22 REMARK 500 LYS A 261 55.34 37.29 REMARK 500 LYS A 265 -62.22 -106.74 REMARK 500 LYS A 289 -11.31 71.48 REMARK 500 ASP A 290 -157.72 -125.25 REMARK 500 MET A 291 -22.10 -142.10 REMARK 500 ASN A 292 56.80 -152.57 REMARK 500 PRO A 294 101.31 -40.28 REMARK 500 GLU B 42 -32.27 -144.08 REMARK 500 ASN B 46 -71.93 -130.20 REMARK 500 HIS B 51 85.75 -65.01 REMARK 500 ASP B 57 112.21 -165.53 REMARK 500 TYR B 69 -8.67 -54.62 REMARK 500 ASP B 94 -168.00 -111.34 REMARK 500 ILE B 107 -70.18 -72.23 REMARK 500 ASN B 114 69.99 -154.19 REMARK 500 PRO B 115 -175.71 -63.81 REMARK 500 ARG B 139 -36.65 -38.47 REMARK 500 ARG B 144 -4.00 -57.54 REMARK 500 ASP B 168 -162.52 -120.36 REMARK 500 SER B 217 160.10 177.81 REMARK 500 VAL B 223 57.89 -63.43 REMARK 500 GLU B 268 -167.60 -168.56 REMARK 500 ARG B 288 80.09 33.56 REMARK 500 THR B 301 126.37 -39.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 288 21.5 L L OUTSIDE RANGE REMARK 500 PHE A 308 22.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 41 OG1 REMARK 620 2 GTP A 400 O1G 59.3 REMARK 620 3 GTP A 400 O1B 135.5 98.2 REMARK 620 4 SER A 20 OG 86.4 123.3 75.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 400 DBREF 4ARZ A 1 310 UNP Q00582 GTR1_YEAST 1 310 DBREF 4ARZ B 1 341 UNP P53290 GTR2_YEAST 1 341 SEQRES 1 A 310 MET SER SER ASN ASN ARG LYS LYS LEU LEU LEU MET GLY SEQRES 2 A 310 ARG SER GLY SER GLY LYS SER SER MET ARG SER ILE ILE SEQRES 3 A 310 PHE SER ASN TYR SER ALA PHE ASP THR ARG ARG LEU GLY SEQRES 4 A 310 ALA THR ILE ASP VAL GLU HIS SER HIS LEU ARG PHE LEU SEQRES 5 A 310 GLY ASN MET THR LEU ASN LEU TRP ASP CYS GLY GLY GLN SEQRES 6 A 310 ASP VAL PHE MET GLU ASN TYR PHE THR LYS GLN LYS ASP SEQRES 7 A 310 HIS ILE PHE GLN MET VAL GLN VAL LEU ILE HIS VAL PHE SEQRES 8 A 310 ASP VAL GLU SER THR GLU VAL LEU LYS ASP ILE GLU ILE SEQRES 9 A 310 PHE ALA LYS ALA LEU LYS GLN LEU ARG LYS TYR SER PRO SEQRES 10 A 310 ASP ALA LYS ILE PHE VAL LEU LEU HIS LYS MET ASP LEU SEQRES 11 A 310 VAL GLN LEU ASP LYS ARG GLU GLU LEU PHE GLN ILE MET SEQRES 12 A 310 MET LYS ASN LEU SER GLU THR SER SER GLU PHE GLY PHE SEQRES 13 A 310 PRO ASN LEU ILE GLY PHE PRO THR SER ILE TRP ASP GLU SEQRES 14 A 310 SER LEU TYR LYS ALA TRP SER GLN ILE VAL CYS SER LEU SEQRES 15 A 310 ILE PRO ASN MET SER ASN HIS GLN SER ASN LEU LYS LYS SEQRES 16 A 310 PHE LYS GLU ILE MET ASN ALA LEU GLU ILE ILE LEU PHE SEQRES 17 A 310 GLU ARG THR THR PHE LEU VAL ILE CYS SER SER ASN GLY SEQRES 18 A 310 GLU ASN SER ASN GLU ASN HIS ASP SER SER ASP ASN ASN SEQRES 19 A 310 ASN VAL LEU LEU ASP PRO LYS ARG PHE GLU LYS ILE SER SEQRES 20 A 310 ASN ILE MET LYS ASN PHE LYS GLN SER CYS THR LYS LEU SEQRES 21 A 310 LYS SER GLY PHE LYS THR LEU ILE LEU ASN ASN ASN ILE SEQRES 22 A 310 TYR VAL SER GLU LEU SER SER ASN MET VAL CYS PHE ILE SEQRES 23 A 310 VAL LEU LYS ASP MET ASN ILE PRO GLN GLU LEU VAL LEU SEQRES 24 A 310 GLU ASN ILE LYS LYS ALA LYS GLU PHE PHE GLN SEQRES 1 B 341 MET SER LEU GLU ALA THR ASP SER LYS ALA MET VAL LEU SEQRES 2 B 341 LEU MET GLY VAL ARG ARG CYS GLY LYS SER SER ILE CYS SEQRES 3 B 341 LYS VAL VAL PHE HIS ASN MET GLN PRO LEU ASP THR LEU SEQRES 4 B 341 TYR LEU GLU SER THR SER ASN PRO SER LEU GLU HIS PHE SEQRES 5 B 341 SER THR LEU ILE ASP LEU ALA VAL MET GLU LEU PRO GLY SEQRES 6 B 341 GLN LEU ASN TYR PHE GLU PRO SER TYR ASP SER GLU ARG SEQRES 7 B 341 LEU PHE LYS SER VAL GLY ALA LEU VAL TYR VAL ILE ASP SEQRES 8 B 341 SER GLN ASP GLU TYR ILE ASN ALA ILE THR ASN LEU ALA SEQRES 9 B 341 MET ILE ILE GLU TYR ALA TYR LYS VAL ASN PRO SER ILE SEQRES 10 B 341 ASN ILE GLU VAL LEU ILE HIS LYS VAL ASP GLY LEU SER SEQRES 11 B 341 GLU ASP PHE LYS VAL ASP ALA GLN ARG ASP ILE MET GLN SEQRES 12 B 341 ARG THR GLY GLU GLU LEU LEU GLU LEU GLY LEU ASP GLY SEQRES 13 B 341 VAL GLN VAL SER PHE TYR LEU THR SER ILE PHE ASP HIS SEQRES 14 B 341 SER ILE TYR GLU ALA PHE SER ARG ILE VAL GLN LYS LEU SEQRES 15 B 341 ILE PRO GLU LEU SER PHE LEU GLU ASN MET LEU ASP ASN SEQRES 16 B 341 LEU ILE GLN HIS SER LYS ILE GLU LYS ALA PHE LEU PHE SEQRES 17 B 341 ASP VAL ASN SER LYS ILE TYR VAL SER THR ASP SER ASN SEQRES 18 B 341 PRO VAL ASP ILE GLN MET TYR GLU VAL CYS SER GLU PHE SEQRES 19 B 341 ILE ASP VAL THR ILE ASP LEU PHE ASP LEU TYR LYS ALA SEQRES 20 B 341 PRO VAL LEU ARG ASN SER GLN LYS SER SER ASP LYS ASP SEQRES 21 B 341 ASN VAL ILE ASN PRO ARG ASN GLU LEU GLN ASN VAL SER SEQRES 22 B 341 GLN LEU ALA ASN GLY VAL ILE ILE TYR LEU ARG GLN MET SEQRES 23 B 341 ILE ARG GLY LEU ALA LEU VAL ALA ILE ILE ARG PRO ASN SEQRES 24 B 341 GLY THR ASP MET GLU SER CYS LEU THR VAL ALA ASP TYR SEQRES 25 B 341 ASN ILE ASP ILE PHE LYS LYS GLY LEU GLU ASP ILE TRP SEQRES 26 B 341 ALA ASN ALA ARG ALA SER GLN ALA LYS ASN SER ILE GLU SEQRES 27 B 341 ASP ASP VAL HET GTP A 400 32 HET MG A 500 1 HET GDP B 400 28 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 MG MG 2+ FORMUL 5 GDP C10 H15 N5 O11 P2 FORMUL 6 HOH *9(H2 O) HELIX 1 1 GLY A 18 SER A 28 1 11 HELIX 2 2 ALA A 32 GLY A 39 5 8 HELIX 3 3 GLN A 65 THR A 74 1 10 HELIX 4 4 GLN A 76 PHE A 81 1 6 HELIX 5 5 GLU A 97 SER A 116 1 20 HELIX 6 6 GLN A 132 PHE A 154 1 23 HELIX 7 7 GLU A 169 CYS A 180 1 12 HELIX 8 8 MET A 186 ASN A 201 1 16 HELIX 9 9 LYS A 241 GLN A 255 1 15 HELIX 10 10 PRO A 294 PHE A 309 1 16 HELIX 11 11 GLY B 21 MET B 33 1 13 HELIX 12 12 MET B 33 GLU B 42 1 10 HELIX 13 13 PRO B 47 HIS B 51 5 5 HELIX 14 14 SER B 73 VAL B 83 1 11 HELIX 15 15 TYR B 96 ASN B 114 1 19 HELIX 16 16 SER B 130 GLU B 147 1 18 HELIX 17 17 GLU B 147 LEU B 152 1 6 HELIX 18 18 HIS B 169 ILE B 183 1 15 HELIX 19 19 PRO B 184 LEU B 186 5 3 HELIX 20 20 SER B 187 ILE B 197 1 11 HELIX 21 21 MET B 227 LYS B 246 1 20 HELIX 22 22 ASP B 302 TRP B 325 1 24 SHEET 1 AA 6 VAL A 44 PHE A 51 0 SHEET 2 AA 6 MET A 55 CYS A 62 -1 O MET A 55 N PHE A 51 SHEET 3 AA 6 ARG A 6 GLY A 13 1 O LYS A 7 N ASN A 58 SHEET 4 AA 6 VAL A 86 ASP A 92 1 O VAL A 86 N LEU A 10 SHEET 5 AA 6 LYS A 120 HIS A 126 1 O LYS A 120 N LEU A 87 SHEET 6 AA 6 ILE A 160 THR A 164 1 O ILE A 160 N VAL A 123 SHEET 1 AB10 VAL A 215 SER A 219 0 SHEET 2 AB10 GLU A 204 GLU A 209 -1 O ILE A 205 N SER A 219 SHEET 3 AB10 MET A 282 VAL A 287 -1 O VAL A 283 N PHE A 208 SHEET 4 AB10 ILE A 273 GLU A 277 -1 O TYR A 274 N ILE A 286 SHEET 5 AB10 PHE A 264 LEU A 269 -1 O LYS A 265 N GLU A 277 SHEET 6 AB10 GLN B 270 LEU B 275 -1 O VAL B 272 N ILE A 268 SHEET 7 AB10 ILE B 280 GLN B 285 -1 O ILE B 281 N SER B 273 SHEET 8 AB10 LEU B 290 ILE B 296 -1 O LEU B 292 N ARG B 284 SHEET 9 AB10 ILE B 202 ASP B 209 -1 N GLU B 203 O ILE B 295 SHEET 10 AB10 SER B 217 THR B 218 -1 O SER B 217 N LEU B 207 SHEET 1 BA 5 ALA B 59 LEU B 63 0 SHEET 2 BA 5 LEU B 13 VAL B 17 1 O LEU B 14 N MET B 61 SHEET 3 BA 5 ALA B 85 ASP B 91 1 O ALA B 85 N LEU B 13 SHEET 4 BA 5 ASN B 118 HIS B 124 1 O ASN B 118 N LEU B 86 SHEET 5 BA 5 VAL B 159 LEU B 163 1 O SER B 160 N VAL B 121 LINK PG GTP A 400 MG MG A 500 1555 1555 2.68 LINK O1G GTP A 400 MG MG A 500 1555 1555 2.70 LINK O1B GTP A 400 MG MG A 500 1555 1555 2.38 LINK MG MG A 500 OG SER A 20 1555 1555 2.15 LINK MG MG A 500 OG1 THR A 41 1555 1555 2.22 SITE 1 AC1 18 SER A 15 GLY A 16 SER A 17 GLY A 18 SITE 2 AC1 18 LYS A 19 SER A 20 SER A 21 ALA A 40 SITE 3 AC1 18 THR A 41 GLY A 63 GLY A 64 HIS A 126 SITE 4 AC1 18 LYS A 127 ASP A 129 LEU A 130 SER A 165 SITE 5 AC1 18 ILE A 166 MG A 500 SITE 1 AC2 3 SER A 20 THR A 41 GTP A 400 SITE 1 AC3 12 ARG B 19 CYS B 20 GLY B 21 LYS B 22 SITE 2 AC3 12 SER B 23 SER B 24 HIS B 124 LYS B 125 SITE 3 AC3 12 ASP B 127 SER B 165 ILE B 166 PHE B 167 CRYST1 90.712 148.897 117.759 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008492 0.00000