HEADER CHAPERONE 01-MAY-12 4ASG TITLE THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N- TITLE 2 TERMINAL HSP90 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT MOLECULAR CHAPERONE HSP82; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 1-220; COMPND 5 SYNONYM: HSP90,82 KDA HEAT SHOCK PROTEIN, HEAT SHOCK PROTEIN HSP90 COMPND 6 HEAT-INDUCIBLE ISOFORM; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHAPERONE, INHIBITIOR, ANSAMYCIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ROE,C.PRODROMOU REVDAT 3 28-JUN-17 4ASG 1 REMARK REVDAT 2 23-SEP-15 4ASG 1 HETNAM FORMUL REVDAT 1 03-APR-13 4ASG 0 JRNL AUTH R.R.A.KITSON,C.CHANG,R.XIONG,H.E.L.WILLIAMS,A.L.DAVIS, JRNL AUTH 2 W.LEWIS,D.L.DEHN,D.SIEGEL,S.M.ROE,C.PRODROMOU,D.ROSS, JRNL AUTH 3 C.J.MOODY JRNL TITL SYNTHESIS OF 19-SUBSTITUTED GELDANAMYCINS WITH ALTERED JRNL TITL 2 CONFORMATIONS AND THEIR BINDING TO HEAT SHOCK PROTEIN HSP90. JRNL REF NAT.CHEM. V. 5 307 2013 JRNL REFN ISSN 1755-4330 JRNL PMID 23511419 JRNL DOI 10.1038/NCHEM.1596 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 815 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 989 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1681 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.340 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1757 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2375 ; 2.224 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 6.573 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;36.634 ;25.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 320 ;19.274 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;25.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 275 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1281 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ASG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 74.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.01 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: IN-HOUSE MODEL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.08850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.63275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.54425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.08850 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.54425 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.63275 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A1217 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2084 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 215 REMARK 465 GLU A 216 REMARK 465 VAL A 217 REMARK 465 PRO A 218 REMARK 465 ILE A 219 REMARK 465 PRO A 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 102 CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 196 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2082 O HOH A 2083 1.89 REMARK 500 O HOH A 2064 O HOH A 2095 2.01 REMARK 500 O HOH A 2094 O HOH A 2095 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2062 O HOH A 2117 5555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 78 CZ ARG A 78 NH1 0.091 REMARK 500 TRP A 148 CE2 TRP A 148 CD2 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 78 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 59 90.87 -177.78 REMARK 500 SER A 80 42.48 -99.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1216 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 28 OE2 REMARK 620 2 HIS A 197 NE2 83.8 REMARK 620 3 HOH A2022 O 98.8 92.9 REMARK 620 4 HOH A2135 O 174.2 102.0 80.4 REMARK 620 5 HOH A2023 O 79.7 80.3 173.1 101.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1217 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2144 O REMARK 620 2 HOH A2144 O 159.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1218 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2121 O REMARK 620 2 HOH A2125 O 95.5 REMARK 620 3 GLU A 183 OE1 92.6 77.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 814 A 1215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1218 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A4H RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE IN REMARK 900 COMPLEX WITH GELDANAMYCIN REMARK 900 RELATED ID: 1AH6 RELATED DB: PDB REMARK 900 STRUCTURE OF THE TETRAGONAL FORM OF THE N-TERMINAL DOMAIN OF THE REMARK 900 YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 1AH8 RELATED DB: PDB REMARK 900 STRUCTURE OF THE ORTHORHOMBIC FORM OF THE N-TERMINAL DOMAIN OF THE REMARK 900 YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 1AM1 RELATED DB: PDB REMARK 900 ATP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE REMARK 900 RELATED ID: 1AMW RELATED DB: PDB REMARK 900 ADP BINDING SITE IN THE HSP90 MOLECULAR CHAPERONE REMARK 900 RELATED ID: 1BGQ RELATED DB: PDB REMARK 900 RADICICOL BOUND TO THE ATP BINDING SITE OF THE N- TERMINAL DOMAIN REMARK 900 OF THE YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 1HK7 RELATED DB: PDB REMARK 900 MIDDLE DOMAIN OF HSP90 REMARK 900 RELATED ID: 1US7 RELATED DB: PDB REMARK 900 COMPLEX OF HSP90 AND P50 REMARK 900 RELATED ID: 1USU RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX BETWEEN AHA1 AND HSP90 REMARK 900 RELATED ID: 1USV RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE COMPLEX BETWEEN AHA1 AND HSP90 REMARK 900 RELATED ID: 1ZW9 RELATED DB: PDB REMARK 900 YEAST HSP82 IN COMPLEX WITH THE NOVEL HSP90 INHIBITOR 8-(6-BROMO- REMARK 900 BENZO[1,3]DIOXOL-5-YLSULFANYL)-9-(3- ISOPROPYLAMINO-PROPYL)-ADENINE REMARK 900 RELATED ID: 1ZWH RELATED DB: PDB REMARK 900 YEAST HSP82 IN COMPLEX WITH THE NOVEL HSP90 INHIBITORRADESTER AMINE REMARK 900 RELATED ID: 2AKP RELATED DB: PDB REMARK 900 HSP90 DELTA24-N210 MUTANT REMARK 900 RELATED ID: 2BRC RELATED DB: PDB REMARK 900 STRUCTURE OF A HSP90 INHIBITOR BOUND TO THE N- TERMINUS OF YEAST REMARK 900 HSP90. REMARK 900 RELATED ID: 2BRE RELATED DB: PDB REMARK 900 STRUCTURE OF A HSP90 INHIBITOR BOUND TO THE N- TERMINUS OF YEAST REMARK 900 HSP90. REMARK 900 RELATED ID: 2CG9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN HSP90-SBA1 CLOSED CHAPERONE COMPLEX REMARK 900 RELATED ID: 2CGE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN HSP90-SBA1 CLOSED CHAPERONE COMPLEX REMARK 900 RELATED ID: 2CGF RELATED DB: PDB REMARK 900 A RADICICOL ANALOGUE BOUND TO THE ATP BINDING SITE OF THE N- REMARK 900 TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE REMARK 900 RELATED ID: 2IWS RELATED DB: PDB REMARK 900 RADICICOL ANALOGUES BOUND TO THE ATP SITE OF HSP90 REMARK 900 RELATED ID: 2IWU RELATED DB: PDB REMARK 900 ANALOGUES OF RADICICOL BOUND TO THE ATP-BINDING SITE OF HSP90. REMARK 900 RELATED ID: 2IWX RELATED DB: PDB REMARK 900 ANALOGUES OF RADICICOL BOUND TO THE ATP-BINDING SITE OF HSP90. REMARK 900 RELATED ID: 2VW5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSP90 INHIBITOR 7-O- CARBAMOYLPREMACBECIN BOUND TO REMARK 900 THE N- TERMINUS OF YEAST HSP90 REMARK 900 RELATED ID: 2VWC RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSP90 INHIBITOR MACBECIN BOUND TO THE N-TERMINUS REMARK 900 OF YEAST HSP90. REMARK 900 RELATED ID: 2WEP RELATED DB: PDB REMARK 900 YEAST HSP90 N-TERMINAL DOMAIN LI-IV MUTANT WITH ADP REMARK 900 RELATED ID: 2WEQ RELATED DB: PDB REMARK 900 YEAST HSP90 N-TERMINAL DOMAIN LI-IV MUTANT WITH GELDANAMYCIN REMARK 900 RELATED ID: 2WER RELATED DB: PDB REMARK 900 YEAST HSP90 N-TERMINAL DOMAIN LI-IV MUTANT WITH RADICICOL REMARK 900 RELATED ID: 2XD6 RELATED DB: PDB REMARK 900 HSP90 COMPLEXED WITH A RESORCYLIC ACID MACROLACTONE. REMARK 900 RELATED ID: 2XX2 RELATED DB: PDB REMARK 900 MACROLACTONE INHIBITOR BOUND TO HSP90 N-TERM REMARK 900 RELATED ID: 2XX4 RELATED DB: PDB REMARK 900 MACROLACTONE INHIBITOR BOUND TO HSP90 N-TERM REMARK 900 RELATED ID: 2XX5 RELATED DB: PDB REMARK 900 MACROLACTONE INHIBITOR BOUND TO HSP90 N-TERM REMARK 900 RELATED ID: 2YGA RELATED DB: PDB REMARK 900 E88G-N92L MUTANT OF N-TERM HSP90 COMPLEXED WITH GELDANAMYCIN REMARK 900 RELATED ID: 2YGE RELATED DB: PDB REMARK 900 E88G-N92L MUTANT OF N-TERM HSP90 COMPLEXED WITH GELDANAMYCIN REMARK 900 RELATED ID: 2YGF RELATED DB: PDB REMARK 900 L89V, L93I AND V136M MUTANT OF N-TERM HSP90 COMPLEXED WITH REMARK 900 GELDANAMYCIN REMARK 900 RELATED ID: 4AS9 RELATED DB: PDB REMARK 900 THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N- REMARK 900 TERMINAL HSP90 REMARK 900 RELATED ID: 4ASA RELATED DB: PDB REMARK 900 THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N- REMARK 900 TERMINAL HSP90 REMARK 900 RELATED ID: 4ASB RELATED DB: PDB REMARK 900 THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N- REMARK 900 TERMINAL HSP90 REMARK 900 RELATED ID: 4ASF RELATED DB: PDB REMARK 900 THE STRUCTURE OF MODIFIED BENZOQUINONE ANSAMYCINS BOUND TO YEAST N- REMARK 900 TERMINAL HSP90 DBREF 4ASG A 1 220 UNP P02829 HSP82_YEAST 1 220 SEQRES 1 A 220 MET ALA SER GLU THR PHE GLU PHE GLN ALA GLU ILE THR SEQRES 2 A 220 GLN LEU MET SER LEU ILE ILE ASN THR VAL TYR SER ASN SEQRES 3 A 220 LYS GLU ILE PHE LEU ARG GLU LEU ILE SER ASN ALA SER SEQRES 4 A 220 ASP ALA LEU ASP LYS ILE ARG TYR LYS SER LEU SER ASP SEQRES 5 A 220 PRO LYS GLN LEU GLU THR GLU PRO ASP LEU PHE ILE ARG SEQRES 6 A 220 ILE THR PRO LYS PRO GLU GLN LYS VAL LEU GLU ILE ARG SEQRES 7 A 220 ASP SER GLY ILE GLY MET THR LYS ALA GLU LEU ILE ASN SEQRES 8 A 220 ASN LEU GLY THR ILE ALA LYS SER GLY THR LYS ALA PHE SEQRES 9 A 220 MET GLU ALA LEU SER ALA GLY ALA ASP VAL SER MET ILE SEQRES 10 A 220 GLY GLN PHE GLY VAL GLY PHE TYR SER LEU PHE LEU VAL SEQRES 11 A 220 ALA ASP ARG VAL GLN VAL ILE SER LYS SER ASN ASP ASP SEQRES 12 A 220 GLU GLN TYR ILE TRP GLU SER ASN ALA GLY GLY SER PHE SEQRES 13 A 220 THR VAL THR LEU ASP GLU VAL ASN GLU ARG ILE GLY ARG SEQRES 14 A 220 GLY THR ILE LEU ARG LEU PHE LEU LYS ASP ASP GLN LEU SEQRES 15 A 220 GLU TYR LEU GLU GLU LYS ARG ILE LYS GLU VAL ILE LYS SEQRES 16 A 220 ARG HIS SER GLU PHE VAL ALA TYR PRO ILE GLN LEU VAL SEQRES 17 A 220 VAL THR LYS GLU VAL GLU LYS GLU VAL PRO ILE PRO HET 814 A1215 46 HET NI A1216 1 HET NI A1217 1 HET NI A1218 1 HETNAM 814 [(3R,5S,6R,7R,11S,12Z,14E)-5,11,21-TRIMETHOXY-3,7,9,15- HETNAM 2 814 TETRAMETHYL-6-OXIDANYL-16,20,22-TRIS(OXIDANYLIDENE)- HETNAM 3 814 19-PHENYL-17-AZABICYCLO[16.3.1]DOCOSA-1(21),8,12,14, HETNAM 4 814 18-PENTAEN-10-YL] CARBAMATE HETNAM NI NICKEL (II) ION FORMUL 2 814 C35 H44 N2 O9 FORMUL 3 NI 3(NI 2+) FORMUL 6 HOH *144(H2 O) HELIX 1 1 GLN A 9 VAL A 23 1 15 HELIX 2 2 GLU A 28 LEU A 50 1 23 HELIX 3 3 ASP A 52 GLU A 59 5 8 HELIX 4 4 PRO A 70 GLN A 72 5 3 HELIX 5 5 THR A 85 LEU A 93 1 9 HELIX 6 6 GLY A 100 ALA A 110 1 11 HELIX 7 7 ASP A 113 GLY A 121 5 9 HELIX 8 8 VAL A 122 LEU A 129 5 8 HELIX 9 9 ASP A 179 LEU A 185 5 7 HELIX 10 10 GLU A 186 SER A 198 1 13 SHEET 1 AA 8 SER A 3 GLU A 7 0 SHEET 2 AA 8 SER A 155 LEU A 160 -1 O PHE A 156 N PHE A 6 SHEET 3 AA 8 TYR A 146 SER A 150 -1 O ILE A 147 N THR A 159 SHEET 4 AA 8 ALA A 131 LYS A 139 -1 O VAL A 134 N SER A 150 SHEET 5 AA 8 GLY A 170 LEU A 177 -1 O GLY A 170 N LYS A 139 SHEET 6 AA 8 VAL A 74 ASP A 79 -1 O LEU A 75 N LEU A 175 SHEET 7 AA 8 ILE A 64 LYS A 69 -1 O ARG A 65 N ARG A 78 SHEET 8 AA 8 ILE A 205 LEU A 207 1 O GLN A 206 N ILE A 66 LINK NI NI A1216 OE2 GLU A 28 1555 1555 2.22 LINK NI NI A1216 NE2 HIS A 197 1555 1555 2.23 LINK NI NI A1216 O HOH A2022 1555 1555 2.31 LINK NI NI A1216 O HOH A2135 1555 1555 2.13 LINK NI NI A1216 O HOH A2023 1555 1555 2.44 LINK NI NI A1217 O HOH A2144 1555 5555 1.87 LINK NI NI A1217 O HOH A2144 1555 1555 1.95 LINK NI NI A1218 O HOH A2121 1555 1555 2.28 LINK NI NI A1218 O HOH A2125 1555 1555 2.44 LINK NI NI A1218 OE1 GLU A 183 1555 1555 2.54 SITE 1 AC1 20 SER A 36 ASN A 37 ASP A 40 ALA A 41 SITE 2 AC1 20 LYS A 44 ASP A 79 MET A 84 ASN A 92 SITE 3 AC1 20 LYS A 98 GLY A 118 GLY A 121 VAL A 122 SITE 4 AC1 20 GLY A 123 PHE A 124 THR A 171 HOH A2033 SITE 5 AC1 20 HOH A2038 HOH A2070 HOH A2092 HOH A2143 SITE 1 AC2 5 GLU A 28 HIS A 197 HOH A2022 HOH A2023 SITE 2 AC2 5 HOH A2135 SITE 1 AC3 2 GLU A 162 HOH A2144 SITE 1 AC4 4 GLU A 183 HOH A2121 HOH A2125 HOH A2126 CRYST1 74.126 74.126 110.177 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013491 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009076 0.00000