HEADER HYDROLASE 06-MAY-12 4ATE TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF BETA-PORPHYRANASE A FROM ZOBELLIA TITLE 2 GALACTANIVORANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PORPHYRANASE A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 18-277; COMPND 5 SYNONYM: BETA-PORPHYRANASE A\, FAMILY GH16; COMPND 6 EC: 3.2.1.178; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZOBELLIA GALACTANIVORANS; SOURCE 3 ORGANISM_TAXID: 63186; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PFO4; SOURCE 9 OTHER_DETAILS: ISOLATED FROM THE RED ALGAE DELESSERIA SANGUINEA AND SOURCE 10 DEPOSITED AT THE GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, AGAR DEGRADATION EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HEHEMANN,G.CORREC,M.JAM,G.MICHEL,M.CZJZEK REVDAT 4 08-MAY-24 4ATE 1 REMARK LINK REVDAT 3 08-MAY-19 4ATE 1 REMARK REVDAT 2 12-SEP-12 4ATE 1 JRNL REVDAT 1 25-JUL-12 4ATE 0 JRNL AUTH J.H.HEHEMANN,G.CORREC,F.THOMAS,T.BERNARD,T.BARBEYRON,M.JAM, JRNL AUTH 2 W.HELBERT,G.MICHEL,M.CZJZEK JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE COMPLEX JRNL TITL 2 AGAROLYTIC ENZYME SYSTEM FROM THE MARINE BACTERIUM ZOBELLIA JRNL TITL 3 GALACTANIVORANS. JRNL REF J.BIOL.CHEM. V. 287 30571 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22778272 JRNL DOI 10.1074/JBC.M112.377184 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.HEHEMANN,G.CORREC,T.BARBEYRON,W.HELBERT,M.CZJZEK,G.MICHEL REMARK 1 TITL TRANSFER OF CARBOHYDRATE-ACTIVE ENZYMES FROM MARINE BACTERIA REMARK 1 TITL 2 TO JAPANESE GUT MICROBIOTA. REMARK 1 REF NATURE V. 464 908 2010 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 20376150 REMARK 1 DOI 10.1038/NATURE08937 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 89663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4036 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1080 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.1280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2272 ; 0.027 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3102 ; 2.280 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 7.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.062 ;23.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;11.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.731 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1825 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1324 ; 2.033 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2158 ; 2.719 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 948 ; 3.999 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 932 ; 5.121 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2272 ; 2.426 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4ATE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052342. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.010 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.12000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: THE STRUCTURE WAS SOLVED BY MAD ON AN AURUM ION CONTAINING REMARK 200 DERIVATIVE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 4000, 0.2 M AMMONIUM REMARK 280 SULFATE AND 0.1 M SODIUM ACETATE PH 4.6 AT 20 DEGREES C, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.82333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.64667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.64667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.82333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 275 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER A 88 O HOH A 2186 1.48 REMARK 500 NH2 ARG A 255 O HOH A 2192 1.87 REMARK 500 OE1 GLN A 34 O HOH A 2039 1.93 REMARK 500 CZ ARG A 255 O HOH A 2192 1.97 REMARK 500 N LEU A 20 O HOH A 2002 1.98 REMARK 500 O HOH A 2045 O HOH A 2102 2.03 REMARK 500 OE1 GLN A 34 O HOH A 2038 2.05 REMARK 500 O HOH A 2010 O HOH A 2011 2.07 REMARK 500 O HOH A 2023 O HOH A 2088 2.15 REMARK 500 NH1 ARG A 255 O HOH A 2192 2.16 REMARK 500 O HOH A 2439 O HOH A 2441 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 66 C LYS A 66 O -0.122 REMARK 500 SER A 88 CB SER A 88 OG -0.089 REMARK 500 TYR A 113 CD1 TYR A 113 CE1 0.090 REMARK 500 LYS A 171 CE LYS A 171 NZ 0.170 REMARK 500 TRP A 198 CE3 TRP A 198 CZ3 0.149 REMARK 500 SER A 201 CA SER A 201 CB 0.098 REMARK 500 SER A 201 CB SER A 201 OG -0.156 REMARK 500 ARG A 255 CG ARG A 255 CD -0.186 REMARK 500 LYS A 259 CE LYS A 259 NZ 0.197 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 65 CD - CE - NZ ANGL. DEV. = -15.7 DEGREES REMARK 500 LYS A 66 CA - C - N ANGL. DEV. = -28.1 DEGREES REMARK 500 LYS A 66 O - C - N ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 LYS A 171 CD - CE - NZ ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 228 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 MET A 229 CG - SD - CE ANGL. DEV. = -17.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 33.93 -94.54 REMARK 500 LYS A 94 -55.41 -138.50 REMARK 500 SER A 123 44.20 -102.24 REMARK 500 ARG A 133 -143.06 -156.92 REMARK 500 ARG A 133 -142.35 -157.65 REMARK 500 PHE A 137 -6.41 -147.19 REMARK 500 ASN A 148 76.20 -152.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2110 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A2116 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1275 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38 O REMARK 620 2 ASN A 40 OD1 72.7 REMARK 620 3 GLY A 74 O 99.5 89.5 REMARK 620 4 ASP A 265 OD1 144.7 141.5 90.7 REMARK 620 5 ASP A 265 O 72.7 145.0 90.6 73.5 REMARK 620 6 HOH A2061 O 86.1 90.6 174.1 85.5 92.7 REMARK 620 7 HOH A2068 O 138.7 67.4 90.8 74.1 147.6 83.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1277 DBREF 4ATE A 18 277 UNP D7GXG0 D7GXG0_ZOBGA 18 277 SEQADV 4ATE HIS A 12 UNP D7GXG0 EXPRESSION TAG SEQADV 4ATE HIS A 13 UNP D7GXG0 EXPRESSION TAG SEQADV 4ATE HIS A 14 UNP D7GXG0 EXPRESSION TAG SEQADV 4ATE HIS A 15 UNP D7GXG0 EXPRESSION TAG SEQADV 4ATE HIS A 16 UNP D7GXG0 EXPRESSION TAG SEQADV 4ATE HIS A 17 UNP D7GXG0 EXPRESSION TAG SEQRES 1 A 266 HIS HIS HIS HIS HIS HIS ALA GLN LEU PRO SER PRO THR SEQRES 2 A 266 ASN GLY LYS LYS TRP GLU LYS VAL GLU GLN LEU SER ASP SEQRES 3 A 266 GLU PHE ASN GLY ASN SER ILE ASP THR ASN LYS TRP TYR SEQRES 4 A 266 ASP TYR HIS PRO PHE TRP GLU GLY ARG ALA PRO SER ASN SEQRES 5 A 266 PHE LYS LYS GLY ASN ALA PHE VAL SER ASP GLY PHE LEU SEQRES 6 A 266 ASN LEU ARG SER THR LEU ARG LYS GLU PRO SER SER VAL SEQRES 7 A 266 GLN ASP PRO PHE LYS ASP ILE TRP VAL ASP ALA ALA ALA SEQRES 8 A 266 ALA VAL SER LYS THR LYS ALA GLN PRO GLY TYR TYR TYR SEQRES 9 A 266 GLU ALA ARG PHE LYS ALA SER SER LEU SER MET THR SER SEQRES 10 A 266 SER PHE TRP PHE ARG VAL GLY GLN PHE SER GLU ILE ASP SEQRES 11 A 266 VAL ILE GLU HIS ILE GLY ASN PRO SER LYS GLU ASN ARG SEQRES 12 A 266 GLN ASP ASP LEU PRO TYR GLN TYR HIS VAL ASN THR HIS SEQRES 13 A 266 TYR TYR GLY LYS HIS ALA GLY LEU GLN PRO LEU GLY THR SEQRES 14 A 266 GLU TYR LYS MET PRO GLY ARG GLY ARG ASP ASN PHE TYR SEQRES 15 A 266 THR TYR GLY PHE TRP TRP LYS SER PRO ASN GLU LEU LEU SEQRES 16 A 266 PHE TYR PHE ASN GLY LYS GLN VAL MET ARG ILE VAL PRO SEQRES 17 A 266 ARG VAL PRO LEU ASP GLU GLU LEU ARG MET ILE PHE ASP SEQRES 18 A 266 THR GLU VAL PHE PRO PHE ALA THR ALA GLY VAL ALA ASN SEQRES 19 A 266 ILE GLY LEU PRO LYS PRO GLU ASN LEU ARG ASP ASN SER SEQRES 20 A 266 LYS ASN THR MET LYS VAL ASP TRP VAL ARG VAL TYR LYS SEQRES 21 A 266 LEU VAL ASP GLY THR ALA HET CA A1275 1 HET SO4 A1276 5 HET CL A1277 1 HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 CA CA 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 CL CL 1- FORMUL 5 HOH *450(H2 O) HELIX 1 1 GLU A 33 SER A 36 5 4 HELIX 2 2 GLU A 85 VAL A 89 5 5 HELIX 3 3 LYS A 151 GLN A 155 5 5 HELIX 4 4 ASP A 157 PRO A 159 5 3 HELIX 5 5 GLY A 170 ALA A 173 5 4 HELIX 6 6 ARG A 187 ASN A 191 5 5 HELIX 7 7 LYS A 250 ARG A 255 1 6 SHEET 1 AA 2 LYS A 28 LYS A 31 0 SHEET 2 AA 2 THR A 261 VAL A 273 1 O LYS A 271 N GLU A 30 SHEET 1 AB 7 ALA A 69 SER A 72 0 SHEET 2 AB 7 PHE A 75 ARG A 79 -1 O PHE A 75 N SER A 72 SHEET 3 AB 7 THR A 261 VAL A 273 -1 O MET A 262 N LEU A 78 SHEET 4 AB 7 TYR A 114 LYS A 120 -1 O TYR A 114 N TYR A 270 SHEET 5 AB 7 TYR A 193 SER A 201 -1 O TYR A 193 N PHE A 119 SHEET 6 AB 7 GLU A 204 PHE A 209 -1 O GLU A 204 N SER A 201 SHEET 7 AB 7 LYS A 212 ILE A 217 -1 O LYS A 212 N PHE A 209 SHEET 1 AC 4 ALA A 69 SER A 72 0 SHEET 2 AC 4 PHE A 75 ARG A 79 -1 O PHE A 75 N SER A 72 SHEET 3 AC 4 THR A 261 VAL A 273 -1 O MET A 262 N LEU A 78 SHEET 4 AC 4 LYS A 28 LYS A 31 1 O LYS A 28 N VAL A 273 SHEET 1 AD 7 TRP A 49 TYR A 50 0 SHEET 2 AD 7 ALA A 102 SER A 105 -1 O VAL A 104 N TYR A 50 SHEET 3 AD 7 ARG A 228 ASP A 232 -1 O MET A 229 N SER A 105 SHEET 4 AD 7 THR A 127 ARG A 133 -1 O SER A 129 N ASP A 232 SHEET 5 AD 7 SER A 138 ILE A 146 -1 O ILE A 140 N PHE A 132 SHEET 6 AD 7 GLN A 161 TYR A 168 -1 O HIS A 163 N GLU A 144 SHEET 7 AD 7 THR A 180 LYS A 183 -1 O THR A 180 N VAL A 164 SHEET 1 AE 3 SER A 62 PHE A 64 0 SHEET 2 AE 3 VAL A 98 ALA A 100 1 O VAL A 98 N ASN A 63 SHEET 3 AE 3 THR A 81 LEU A 82 -1 O THR A 81 N ASP A 99 LINK O GLU A 38 CA CA A1275 1555 1555 2.40 LINK OD1 ASN A 40 CA CA A1275 1555 1555 2.55 LINK O GLY A 74 CA CA A1275 1555 1555 2.30 LINK OD1 ASP A 265 CA CA A1275 1555 1555 2.40 LINK O ASP A 265 CA CA A1275 1555 1555 2.40 LINK CA CA A1275 O HOH A2061 1555 1555 2.39 LINK CA CA A1275 O HOH A2068 1555 1555 2.43 CISPEP 1 ALA A 60 PRO A 61 0 11.45 SITE 1 AC1 6 GLU A 38 ASN A 40 GLY A 74 ASP A 265 SITE 2 AC1 6 HOH A2061 HOH A2068 SITE 1 AC2 10 HIS A 167 PRO A 177 GLY A 242 LYS A 271 SITE 2 AC2 10 HOH A2016 HOH A2317 HOH A2318 HOH A2411 SITE 3 AC2 10 HOH A2449 HOH A2450 SITE 1 AC3 5 LEU A 124 SER A 125 PRO A 249 LYS A 250 SITE 2 AC3 5 ASN A 253 CRYST1 70.270 70.270 92.470 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014231 0.008216 0.000000 0.00000 SCALE2 0.000000 0.016432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010814 0.00000