HEADER TRANSCRIPTION 07-MAY-12 4ATG TITLE TAF6 C-TERMINAL DOMAIN FROM ANTONOSPORA LOCUSTAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAF6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 160-355; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANTONOSPORA LOCUSTAE; SOURCE 3 ORGANISM_TAXID: 278021; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-MCN; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNEA-TH KEYWDS TRANSCRIPTION, TFIID EXPDTA X-RAY DIFFRACTION AUTHOR C.ROMIER REVDAT 3 22-AUG-12 4ATG 1 COMPND JRNL REVDAT 2 25-JUL-12 4ATG 1 JRNL REVDAT 1 20-JUN-12 4ATG 0 JRNL AUTH E.SCHEER,F.DELBAC,L.TORA,D.MORAS,C.ROMIER JRNL TITL TFIID TAF6-TAF9 COMPLEX FORMATION INVOLVES THE HEAT REPEAT- JRNL TITL 2 CONTAINING C-TERMINAL DOMAIN OF TAF6 AND IS MODULATED BY JRNL TITL 3 TAF5 PROTEIN. JRNL REF J.BIOL.CHEM. V. 287 27580 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22696218 JRNL DOI 10.1074/JBC.M112.379206 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,WOMACK; REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.22 REMARK 3 NUMBER OF REFLECTIONS : 17887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1711 REMARK 3 R VALUE (WORKING SET) : 0.1687 REMARK 3 FREE R VALUE : 0.2151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.12 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2827 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1810 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2676 REMARK 3 BIN R VALUE (WORKING SET) : 0.1786 REMARK 3 BIN FREE R VALUE : 0.2235 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.34 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 151 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1601 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.8543 REMARK 3 B22 (A**2) : 0.6527 REMARK 3 B33 (A**2) : -1.5069 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : -1.1820 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.236 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.138 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.132 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.131 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9560 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9311 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1661 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 2247 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 622 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 36 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 232 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1661 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 220 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2143 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.94 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 25.9766 40.0697 15.9232 REMARK 3 T TENSOR REMARK 3 T11: -0.0846 T22: -0.0140 REMARK 3 T33: -0.0764 T12: 0.0216 REMARK 3 T13: 0.0128 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.0326 L22: 0.9907 REMARK 3 L33: 1.3196 L12: 0.1404 REMARK 3 L13: 0.6099 L23: 0.7462 REMARK 3 S TENSOR REMARK 3 S11: -0.0572 S12: -0.4045 S13: -0.0068 REMARK 3 S21: 0.0516 S22: 0.0582 S23: 0.0080 REMARK 3 S31: 0.0442 S32: 0.0370 S33: -0.0010 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ATG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAY-12. REMARK 100 THE PDBE ID CODE IS EBI-52380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 4) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17911 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.89 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.34 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.5 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5, 10% (W/V) PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.34250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 355 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 180 66.31 -100.08 REMARK 500 THR A 326 -79.96 -81.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHE A 401 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NOT IN DATABASES REMARK 999 GLY 160 AND SER 161 THROMBIN CLEAVAGE SITE. REMARK 999 HIS 162 AND MET 163 ENGINEERED NDE1 CLONING SITE. DBREF 4ATG A 160 355 PDB 4ATG 4ATG 160 355 SEQADV 4ATG GLY A 160 PDB 4ATG SEE REMARK 999 SEQADV 4ATG SER A 161 PDB 4ATG SEE REMARK 999 SEQADV 4ATG HIS A 162 PDB 4ATG SEE REMARK 999 SEQADV 4ATG MET A 163 PDB 4ATG SEE REMARK 999 SEQRES 1 A 196 GLY SER HIS MET LEU PRO LYS GLU LEU GLN LEU TYR PHE SEQRES 2 A 196 ASP LYS ILE LEU SER MET ILE LYS SER ASP MET LYS ASP SEQRES 3 A 196 ILE ALA ILE GLU CYS LEU GLU LYS GLU SER GLY LEU GLN SEQRES 4 A 196 GLN LEU VAL PRO TYR PHE ILE GLN HIS ILE SER GLU LEU SEQRES 5 A 196 ILE LEU LYS SER PHE LYS GLU ALA GLU VAL LEU LYS THR SEQRES 6 A 196 CYS ILE ALA LEU TYR PHE SER LEU ILE LYS ASN LYS HIS SEQRES 7 A 196 VAL PHE ILE ASP PRO TYR LEU HIS GLN ILE LEU PRO SER SEQRES 8 A 196 LEU LEU THR CYS VAL ILE GLY LYS SER ILE VAL ASP ASP SEQRES 9 A 196 ASP VAL ARG LYS MET SER ALA ASP ILE VAL LYS TYR ILE SEQRES 10 A 196 TYR ASP THR TYR SER ARG SER TYR LYS THR LEU ALA PRO SEQRES 11 A 196 ARG VAL LEU LYS THR LEU LYS GLY VAL TRP MET ASP PRO SEQRES 12 A 196 ASN ARG SER GLU ASP SER GLN TYR GLY ALA LEU TYR CYS SEQRES 13 A 196 LEU SER ILE LEU SER LYS ASN VAL VAL ASN THR VAL ILE SEQRES 14 A 196 ARG GLU HIS ALA GLU GLU TYR LYS ARG THR ILE GLY LYS SEQRES 15 A 196 LYS LYS VAL THR ASN LEU LEU ASP ASN VAL LEU ASN VAL SEQRES 16 A 196 HIS HET NHE A 400 13 HET NHE A 401 13 HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 NHE 2(C8 H17 N O3 S) FORMUL 3 HOH *185(H2 O) HELIX 1 1 GLY A 160 LEU A 164 5 5 HELIX 2 2 PRO A 165 ILE A 179 1 15 HELIX 3 3 MET A 183 GLU A 194 1 12 HELIX 4 4 LEU A 200 SER A 215 1 16 HELIX 5 5 GLU A 218 ASN A 235 1 18 HELIX 6 6 ILE A 240 PRO A 242 5 3 HELIX 7 7 TYR A 243 GLY A 257 1 15 HELIX 8 8 ASP A 262 SER A 281 1 20 HELIX 9 9 THR A 286 MET A 300 1 15 HELIX 10 10 SER A 305 SER A 320 1 16 HELIX 11 11 SER A 320 THR A 326 1 7 HELIX 12 12 THR A 326 ILE A 339 1 14 HELIX 13 13 LYS A 341 VAL A 354 1 14 SITE 1 AC1 3 SER A 283 TYR A 284 LYS A 285 SITE 1 AC2 9 LEU A 248 PRO A 249 LEU A 252 THR A 253 SITE 2 AC2 9 ARG A 290 VAL A 291 THR A 294 ASN A 353 SITE 3 AC2 9 HOH A2104 CRYST1 33.792 50.685 67.293 90.00 100.81 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029593 0.000000 0.005650 0.00000 SCALE2 0.000000 0.019730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015129 0.00000