HEADER DNA BINDING PROTEIN/DNA 08-MAY-12 4ATK TITLE MITF:E-BOX COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROPHTHALMIA-ASSOCIATED TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 180-296; COMPND 5 SYNONYM: MITF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*T)-3'; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: E-BOX SEQUENCE; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 OTHER_DETAILS: SYNTHETIC KEYWDS DNA BINDING PROTEIN-DNA COMPLEX, DNA-BINDING PROTEIN-DNA COMPLEX, KEYWDS 2 TRANSCRIPTION FACTOR, MELANOMA EXPDTA X-RAY DIFFRACTION AUTHOR V.POGENBERG,V.DEINEKO,M.WILMANNS REVDAT 3 20-DEC-23 4ATK 1 REMARK REVDAT 2 19-DEC-12 4ATK 1 JRNL REVDAT 1 12-DEC-12 4ATK 0 JRNL AUTH V.POGENBERG,M.HOGMUNDSDOTTIR,K.BERGSTEINSDOTTIR,A.SCHEPSKY, JRNL AUTH 2 B.PHUNG,V.DEINEKO,M.MILEWSKI,E.STEINGRIMSSON,M.WILMANNS JRNL TITL RESTRICTED LEUCINE ZIPPER DIMERIZATION AND SPECIFICITY OF JRNL TITL 2 DNA RECOGNITION OF THE MELANOCYTE MASTER REGULATOR MITF JRNL REF GENES DEV. V. 26 2647 2012 JRNL REFN ISSN 0890-9369 JRNL PMID 23207919 JRNL DOI 10.1101/GAD.198192.112 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 10312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 521 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.6621 - 4.6565 0.85 2396 134 0.2119 0.2544 REMARK 3 2 4.6565 - 3.7158 0.92 2505 128 0.2226 0.2653 REMARK 3 3 3.7158 - 3.2520 0.92 2495 117 0.2603 0.2779 REMARK 3 4 3.2520 - 2.9573 0.86 2341 111 0.5029 0.4300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.40 REMARK 3 SHRINKAGE RADIUS : 1.17 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 81.05 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25360 REMARK 3 B22 (A**2) : -3.99410 REMARK 3 B33 (A**2) : 4.24760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.01510 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.4880 REMARK 3 OPERATOR: H+2L, -K, -L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1760 REMARK 3 ANGLE : 1.400 2500 REMARK 3 CHIRALITY : 0.078 273 REMARK 3 PLANARITY : 0.006 214 REMARK 3 DIHEDRAL : 24.490 740 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 207:230) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0239 14.4709 14.4240 REMARK 3 T TENSOR REMARK 3 T11: 0.4081 T22: 0.3185 REMARK 3 T33: 0.2265 T12: 0.0156 REMARK 3 T13: -0.2267 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 4.4705 L22: 1.9552 REMARK 3 L33: 5.1648 L12: 0.1151 REMARK 3 L13: -3.8556 L23: 0.3082 REMARK 3 S TENSOR REMARK 3 S11: 0.1709 S12: -0.5577 S13: 0.2997 REMARK 3 S21: 0.4212 S22: -0.1805 S23: -0.0719 REMARK 3 S31: -0.7826 S32: -0.1905 S33: 0.2881 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 231:242) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1125 7.8334 -6.4901 REMARK 3 T TENSOR REMARK 3 T11: 0.7537 T22: 0.8180 REMARK 3 T33: 0.4746 T12: -0.2339 REMARK 3 T13: -0.2365 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 6.8399 L22: 0.2192 REMARK 3 L33: 0.0928 L12: -0.2039 REMARK 3 L13: -0.2462 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.1041 S12: 0.5893 S13: -0.2026 REMARK 3 S21: -0.8569 S22: -0.0833 S23: 0.8216 REMARK 3 S31: 0.8809 S32: -1.4189 S33: 0.1529 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 243:268) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7487 2.7895 -5.1597 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.1024 REMARK 3 T33: 0.2726 T12: 0.0345 REMARK 3 T13: -0.1019 T23: 0.0869 REMARK 3 L TENSOR REMARK 3 L11: 8.0357 L22: 1.4670 REMARK 3 L33: 4.7246 L12: -2.6843 REMARK 3 L13: -5.8648 L23: 2.1980 REMARK 3 S TENSOR REMARK 3 S11: 0.2815 S12: 0.3003 S13: -0.1908 REMARK 3 S21: -0.0295 S22: -0.2244 S23: -0.2142 REMARK 3 S31: -0.4117 S32: -0.1117 S33: 0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 205:230) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9942 -1.2528 10.1444 REMARK 3 T TENSOR REMARK 3 T11: 0.1564 T22: 0.2141 REMARK 3 T33: 0.1678 T12: -0.0675 REMARK 3 T13: -0.0542 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 1.6439 L22: 0.8895 REMARK 3 L33: 1.3241 L12: 1.0110 REMARK 3 L13: 0.0022 L23: -0.2773 REMARK 3 S TENSOR REMARK 3 S11: 0.1742 S12: -0.4642 S13: -0.5051 REMARK 3 S21: -0.0787 S22: -0.1291 S23: 0.1026 REMARK 3 S31: 0.3191 S32: -0.3850 S33: 0.0999 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 231:242) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7167 3.7116 13.8890 REMARK 3 T TENSOR REMARK 3 T11: 0.4257 T22: 0.6029 REMARK 3 T33: 0.3717 T12: 0.0230 REMARK 3 T13: -0.2049 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 3.2620 L22: 5.3347 REMARK 3 L33: 5.4226 L12: 2.1789 REMARK 3 L13: 4.0548 L23: 1.4900 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: -1.0318 S13: -0.1524 REMARK 3 S21: 0.7979 S22: 0.3477 S23: -1.2752 REMARK 3 S31: 0.0871 S32: 1.7694 S33: -0.0441 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 243:259) REMARK 3 ORIGIN FOR THE GROUP (A): 39.7823 10.2947 4.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.0986 REMARK 3 T33: 0.1449 T12: -0.0032 REMARK 3 T13: -0.1908 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.5483 L22: 1.1282 REMARK 3 L33: 1.4904 L12: 0.4128 REMARK 3 L13: -0.5973 L23: -0.5399 REMARK 3 S TENSOR REMARK 3 S11: -0.1756 S12: -0.3438 S13: 0.0618 REMARK 3 S21: 0.1091 S22: -0.1224 S23: -0.2060 REMARK 3 S31: -0.4832 S32: 0.3513 S33: 0.0365 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 19.0063 5.2700 18.2257 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.8141 REMARK 3 T33: 0.2817 T12: -0.0446 REMARK 3 T13: -0.9360 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 1.5595 L22: 1.1558 REMARK 3 L33: 1.9352 L12: -1.3126 REMARK 3 L13: 1.1056 L23: -1.1857 REMARK 3 S TENSOR REMARK 3 S11: 0.2798 S12: -0.4267 S13: -0.2261 REMARK 3 S21: 0.0825 S22: -0.0540 S23: 0.1859 REMARK 3 S31: 0.4304 S32: -0.1651 S33: 0.1792 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 18.1390 7.7256 17.9625 REMARK 3 T TENSOR REMARK 3 T11: 0.3340 T22: 0.7958 REMARK 3 T33: 0.1967 T12: -0.0740 REMARK 3 T13: -0.7915 T23: -0.1468 REMARK 3 L TENSOR REMARK 3 L11: 1.8239 L22: 0.9921 REMARK 3 L33: 1.8708 L12: -0.1246 REMARK 3 L13: 0.3168 L23: -0.6364 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: -0.1839 S13: 0.0780 REMARK 3 S21: -0.0658 S22: 0.0607 S23: 0.1420 REMARK 3 S31: -0.3243 S32: -0.4103 S33: 0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ATK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290050703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9535 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ATH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 75.71000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 75.71000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 179 REMARK 465 ASN A 180 REMARK 465 ILE A 181 REMARK 465 LYS A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 LEU A 185 REMARK 465 THR A 186 REMARK 465 ALA A 187 REMARK 465 CYS A 188 REMARK 465 ILE A 189 REMARK 465 PHE A 190 REMARK 465 PRO A 191 REMARK 465 THR A 192 REMARK 465 GLU A 193 REMARK 465 SER A 194 REMARK 465 GLU A 195 REMARK 465 ALA A 196 REMARK 465 ARG A 197 REMARK 465 ALA A 198 REMARK 465 LEU A 199 REMARK 465 ALA A 200 REMARK 465 LYS A 201 REMARK 465 GLU A 202 REMARK 465 ARG A 203 REMARK 465 GLN A 204 REMARK 465 LYS A 205 REMARK 465 LYS A 206 REMARK 465 SER A 234 REMARK 465 ASN A 235 REMARK 465 ASN A 269 REMARK 465 ARG A 270 REMARK 465 GLN A 271 REMARK 465 LYS A 272 REMARK 465 LYS A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 HIS A 276 REMARK 465 ALA A 277 REMARK 465 ASN A 278 REMARK 465 ARG A 279 REMARK 465 HIS A 280 REMARK 465 LEU A 281 REMARK 465 LEU A 282 REMARK 465 LEU A 283 REMARK 465 ARG A 284 REMARK 465 VAL A 285 REMARK 465 GLN A 286 REMARK 465 GLU A 287 REMARK 465 LEU A 288 REMARK 465 GLU A 289 REMARK 465 MET A 290 REMARK 465 GLN A 291 REMARK 465 ALA A 292 REMARK 465 ARG A 293 REMARK 465 ALA A 294 REMARK 465 HIS A 295 REMARK 465 GLY A 296 REMARK 465 ALA B 179 REMARK 465 ASN B 180 REMARK 465 ILE B 181 REMARK 465 LYS B 182 REMARK 465 ARG B 183 REMARK 465 GLU B 184 REMARK 465 LEU B 185 REMARK 465 THR B 186 REMARK 465 ALA B 187 REMARK 465 CYS B 188 REMARK 465 ILE B 189 REMARK 465 PHE B 190 REMARK 465 PRO B 191 REMARK 465 THR B 192 REMARK 465 GLU B 193 REMARK 465 SER B 194 REMARK 465 GLU B 195 REMARK 465 ALA B 196 REMARK 465 ARG B 197 REMARK 465 ALA B 198 REMARK 465 LEU B 199 REMARK 465 ALA B 200 REMARK 465 LYS B 201 REMARK 465 GLU B 202 REMARK 465 ARG B 203 REMARK 465 GLN B 204 REMARK 465 LYS B 265 REMARK 465 ASP B 266 REMARK 465 LEU B 267 REMARK 465 GLU B 268 REMARK 465 ASN B 269 REMARK 465 ARG B 270 REMARK 465 GLN B 271 REMARK 465 LYS B 272 REMARK 465 LYS B 273 REMARK 465 LEU B 274 REMARK 465 GLU B 275 REMARK 465 HIS B 276 REMARK 465 ALA B 277 REMARK 465 ASN B 278 REMARK 465 ARG B 279 REMARK 465 HIS B 280 REMARK 465 LEU B 281 REMARK 465 LEU B 282 REMARK 465 LEU B 283 REMARK 465 ARG B 284 REMARK 465 VAL B 285 REMARK 465 GLN B 286 REMARK 465 GLU B 287 REMARK 465 LEU B 288 REMARK 465 GLU B 289 REMARK 465 MET B 290 REMARK 465 GLN B 291 REMARK 465 ALA B 292 REMARK 465 ARG B 293 REMARK 465 ALA B 294 REMARK 465 HIS B 295 REMARK 465 GLY B 296 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 ASN A 208 CG OD1 ND2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 ASP B 207 CG OD1 OD2 REMARK 470 ARG B 240 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 2 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 6 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DG C 9 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 13 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG D 5 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 6 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC D 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 13 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT D 16 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ATH RELATED DB: PDB REMARK 900 MITF APO STRUCTURE REMARK 900 RELATED ID: 4ATI RELATED DB: PDB REMARK 900 MITF:M-BOX COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 ISOFORM A2 DBREF 4ATK A 180 296 UNP Q08874 MITF_MOUSE 180 296 DBREF 4ATK B 180 296 UNP Q08874 MITF_MOUSE 180 296 DBREF 4ATK C 1 16 PDB 4ATK 4ATK 1 16 DBREF 4ATK D 1 16 PDB 4ATK 4ATK 1 16 SEQADV 4ATK ALA A 179 UNP Q08874 EXPRESSION TAG SEQADV 4ATK ALA B 179 UNP Q08874 EXPRESSION TAG SEQRES 1 A 118 ALA ASN ILE LYS ARG GLU LEU THR ALA CYS ILE PHE PRO SEQRES 2 A 118 THR GLU SER GLU ALA ARG ALA LEU ALA LYS GLU ARG GLN SEQRES 3 A 118 LYS LYS ASP ASN HIS ASN LEU ILE GLU ARG ARG ARG ARG SEQRES 4 A 118 PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU GLY THR LEU SEQRES 5 A 118 ILE PRO LYS SER ASN ASP PRO ASP MET ARG TRP ASN LYS SEQRES 6 A 118 GLY THR ILE LEU LYS ALA SER VAL ASP TYR ILE ARG LYS SEQRES 7 A 118 LEU GLN ARG GLU GLN GLN ARG ALA LYS ASP LEU GLU ASN SEQRES 8 A 118 ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG HIS LEU LEU SEQRES 9 A 118 LEU ARG VAL GLN GLU LEU GLU MET GLN ALA ARG ALA HIS SEQRES 10 A 118 GLY SEQRES 1 B 118 ALA ASN ILE LYS ARG GLU LEU THR ALA CYS ILE PHE PRO SEQRES 2 B 118 THR GLU SER GLU ALA ARG ALA LEU ALA LYS GLU ARG GLN SEQRES 3 B 118 LYS LYS ASP ASN HIS ASN LEU ILE GLU ARG ARG ARG ARG SEQRES 4 B 118 PHE ASN ILE ASN ASP ARG ILE LYS GLU LEU GLY THR LEU SEQRES 5 B 118 ILE PRO LYS SER ASN ASP PRO ASP MET ARG TRP ASN LYS SEQRES 6 B 118 GLY THR ILE LEU LYS ALA SER VAL ASP TYR ILE ARG LYS SEQRES 7 B 118 LEU GLN ARG GLU GLN GLN ARG ALA LYS ASP LEU GLU ASN SEQRES 8 B 118 ARG GLN LYS LYS LEU GLU HIS ALA ASN ARG HIS LEU LEU SEQRES 9 B 118 LEU ARG VAL GLN GLU LEU GLU MET GLN ALA ARG ALA HIS SEQRES 10 B 118 GLY SEQRES 1 C 16 DA DG DT DA DG DC DA DC DG DT DG DC DT SEQRES 2 C 16 DA DC DT SEQRES 1 D 16 DA DG DT DA DG DC DA DC DG DT DG DC DT SEQRES 2 D 16 DA DC DT HELIX 1 1 ASP A 207 ILE A 231 1 25 HELIX 2 2 ASN A 242 LEU A 267 1 26 HELIX 3 3 LYS B 205 ILE B 231 1 27 HELIX 4 4 ASN B 242 ALA B 264 1 23 CRYST1 151.420 45.090 110.660 90.00 136.47 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006604 0.000000 0.006952 0.00000 SCALE2 0.000000 0.022178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013121 0.00000