HEADER TRANSFERASE 08-MAY-12 4ATN TITLE CRYSTAL STRUCTURE OF C2498 2'-O-RIBOSE METHYLTRANSFERASE RLMM FROM TITLE 2 ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE M; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 23S RRNA (CYTIDINE2498-2'-O)-METHYLTRANSFERASE, 23S RRNA 2'- COMPND 5 O-RIBOSE METHYLTRANSFERASE RLMM; COMPND 6 EC: 2.1.1.186; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: K-12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEXP5-CT/TOPO KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.PUNEKAR,T.R.SHEPHERD,J.LILJERUHM,A.C.FORSTER,M.SELMER REVDAT 6 06-NOV-24 4ATN 1 REMARK REVDAT 5 01-MAY-24 4ATN 1 REMARK LINK REVDAT 4 17-JAN-18 4ATN 1 REMARK REVDAT 3 14-NOV-12 4ATN 1 JRNL REVDAT 2 22-AUG-12 4ATN 1 JRNL REVDAT 1 15-AUG-12 4ATN 0 JRNL AUTH A.S.PUNEKAR,T.R.SHEPHERD,J.LILJERUHM,A.C.FORSTER,M.SELMER JRNL TITL CRYSTAL STRUCTURE OF RLMM, THE 2'O-RIBOSE METHYLTRANSFERASE JRNL TITL 2 FOR C2498 OF ESCHERICHIA COLI 23S RRNA. JRNL REF NUCLEIC ACIDS RES. V. 40 10507 2012 JRNL REFN ISSN 0305-1048 JRNL PMID 22923526 JRNL DOI 10.1093/NAR/GKS727 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.7717 - 4.3323 1.00 2735 144 0.1719 0.1886 REMARK 3 2 4.3323 - 3.4405 1.00 2629 139 0.1470 0.1546 REMARK 3 3 3.4405 - 3.0061 1.00 2615 137 0.1549 0.2040 REMARK 3 4 3.0061 - 2.7315 1.00 2599 137 0.1687 0.2259 REMARK 3 5 2.7315 - 2.5359 1.00 2573 136 0.1676 0.2308 REMARK 3 6 2.5359 - 2.3864 1.00 2585 136 0.1682 0.2237 REMARK 3 7 2.3864 - 2.2670 1.00 2583 136 0.1845 0.2586 REMARK 3 8 2.2670 - 2.1683 0.99 2529 133 0.2022 0.2752 REMARK 3 9 2.1683 - 2.0849 1.00 2588 136 0.1952 0.2442 REMARK 3 10 2.0849 - 2.0129 1.00 2560 135 0.2022 0.2846 REMARK 3 11 2.0129 - 1.9500 0.99 2524 133 0.2351 0.2760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 69.85 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.50990 REMARK 3 B22 (A**2) : -1.50990 REMARK 3 B33 (A**2) : 3.01980 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3103 REMARK 3 ANGLE : 1.072 4168 REMARK 3 CHIRALITY : 0.074 432 REMARK 3 PLANARITY : 0.005 530 REMARK 3 DIHEDRAL : 15.001 1156 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ATN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : BENT SI (111) CRYSTAL, REMARK 200 HORIZONTALLY FOCUSING OPTICS REMARK 200 MULTILAYER MIRROR, CURVED TO REMARK 200 FOCUS IN THE VERTICAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH SX-165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 28.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL OBTAINED FROM K2PTCL4 DERIVATIVE CRYSTAL REMARK 200 DATA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3 M AMMONIUM TARTRATE DIBASIC PH REMARK 280 7.0, 20% PEG 3350, 3.0% DEXTRAN SULFATE SODIUM SALT, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.69667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.39333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.39333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.69667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CATALYZES THE 2'-O-METHYLATION AT NUCLEOTIDE C2498 IN 23S RRNA REMARK 400 OF ESCHERICHIA COLI REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 358 REMARK 465 VAL A 359 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 ARG A 362 REMARK 465 ARG A 363 REMARK 465 ASP A 364 REMARK 465 GLU A 365 REMARK 465 ARG A 366 REMARK 465 SER A 367 REMARK 465 LYS A 368 REMARK 465 GLY A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 SO4 A 1387 O HOH A 2122 2.07 REMARK 500 O1 EDO A 1375 O HOH A 2195 2.17 REMARK 500 OD2 ASP A 328 O HOH A 2183 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 29 78.99 -101.47 REMARK 500 ASN A 167 52.03 -153.09 REMARK 500 MET A 173 17.71 58.33 REMARK 500 LEU A 209 61.86 -114.73 REMARK 500 PRO A 308 -169.72 -79.16 REMARK 500 ARG A 345 -105.93 -95.31 REMARK 500 ARG A 345 -104.89 -95.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1366 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1367 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1380 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1381 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1382 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1387 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AUK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C2498 2'-O-RIBOSE METHYLTRANSFERASE RLMM FROM REMARK 900 ESCHERICHIA COLI REMARK 999 REMARK 999 SEQUENCE REMARK 999 HAS 6XHIS-TAG AT THE C-TERMINAL END DBREF 4ATN A 1 366 UNP P0ADR6 RLMM_ECOLI 1 366 SEQADV 4ATN SER A 367 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN LYS A 368 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN GLY A 369 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN HIS A 370 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN HIS A 371 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN HIS A 372 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN HIS A 373 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN HIS A 374 UNP P0ADR6 EXPRESSION TAG SEQADV 4ATN HIS A 375 UNP P0ADR6 EXPRESSION TAG SEQRES 1 A 375 MET ASN LYS VAL VAL LEU LEU CYS ARG PRO GLY PHE GLU SEQRES 2 A 375 LYS GLU CYS ALA ALA GLU ILE THR ASP LYS ALA GLY GLN SEQRES 3 A 375 ARG GLU ILE PHE GLY PHE ALA ARG VAL LYS GLU ASN ALA SEQRES 4 A 375 GLY TYR VAL ILE TYR GLU CYS TYR GLN PRO ASP ASP GLY SEQRES 5 A 375 ASP LYS LEU ILE ARG GLU LEU PRO PHE SER SER LEU ILE SEQRES 6 A 375 PHE ALA ARG GLN TRP PHE VAL VAL GLY GLU LEU LEU GLN SEQRES 7 A 375 HIS LEU PRO PRO GLU ASP ARG ILE THR PRO ILE VAL GLY SEQRES 8 A 375 MET LEU GLN GLY VAL VAL GLU LYS GLY GLY GLU LEU ARG SEQRES 9 A 375 VAL GLU VAL ALA ASP THR ASN GLU SER LYS GLU LEU LEU SEQRES 10 A 375 LYS PHE CYS ARG LYS PHE THR VAL PRO LEU ARG ALA ALA SEQRES 11 A 375 LEU ARG ASP ALA GLY VAL LEU ALA ASN TYR GLU THR PRO SEQRES 12 A 375 LYS ARG PRO VAL VAL HIS VAL PHE PHE ILE ALA PRO GLY SEQRES 13 A 375 CSS CYS TYR THR GLY TYR SER TYR SER ASN ASN ASN SER SEQRES 14 A 375 PRO PHE TYR MET GLY ILE PRO ARG LEU LYS PHE PRO ALA SEQRES 15 A 375 ASP ALA PRO SER ARG SER THR LEU LYS LEU GLU GLU ALA SEQRES 16 A 375 PHE HIS VAL PHE ILE PRO ALA ASP GLU TRP ASP GLU ARG SEQRES 17 A 375 LEU ALA ASN GLY MET TRP ALA VAL ASP LEU GLY ALA CYS SEQRES 18 A 375 PRO GLY GLY TRP THR TYR GLN LEU VAL LYS ARG ASN MET SEQRES 19 A 375 TRP VAL TYR SER VAL ASP ASN GLY PRO MET ALA GLN SER SEQRES 20 A 375 LEU MET ASP THR GLY GLN VAL THR TRP LEU ARG GLU ASP SEQRES 21 A 375 GLY PHE LYS PHE ARG PRO THR ARG SER ASN ILE SER TRP SEQRES 22 A 375 MET VAL CYS ASP MET VAL GLU LYS PRO ALA LYS VAL ALA SEQRES 23 A 375 ALA LEU MET ALA GLN TRP LEU VAL ASN GLY TRP CYS ARG SEQRES 24 A 375 GLU THR ILE PHE ASN LEU LYS LEU PRO MET LYS LYS ARG SEQRES 25 A 375 TYR GLU GLU VAL SER HIS ASN LEU ALA TYR ILE GLN ALA SEQRES 26 A 375 GLN LEU ASP GLU HIS GLY ILE ASN ALA GLN ILE GLN ALA SEQRES 27 A 375 ARG GLN LEU TYR HIS ASP ARG GLU GLU VAL THR VAL HIS SEQRES 28 A 375 VAL ARG ARG ILE TRP ALA ALA VAL GLY GLY ARG ARG ASP SEQRES 29 A 375 GLU ARG SER LYS GLY HIS HIS HIS HIS HIS HIS MODRES 4ATN CSS A 157 CYS S-MERCAPTOCYSTEINE HET CSS A 157 7 HET GOL A1358 6 HET GOL A1359 6 HET GOL A1360 6 HET GOL A1361 6 HET GOL A1362 6 HET EDO A1363 4 HET EDO A1364 4 HET EDO A1365 4 HET EDO A1366 4 HET EDO A1367 4 HET EDO A1368 4 HET EDO A1369 4 HET EDO A1370 4 HET EDO A1371 4 HET EDO A1372 4 HET EDO A1373 4 HET EDO A1374 4 HET EDO A1375 4 HET EDO A1376 4 HET EDO A1377 4 HET EDO A1378 4 HET EDO A1379 4 HET EDO A1380 4 HET EDO A1381 4 HET EDO A1382 4 HET EDO A1383 4 HET SO4 A1384 5 HET SO4 A1385 5 HET SO4 A1386 5 HET SO4 A1387 5 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSS C3 H7 N O2 S2 FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 EDO 21(C2 H6 O2) FORMUL 28 SO4 4(O4 S 2-) FORMUL 32 HOH *195(H2 O) HELIX 1 1 PHE A 12 GLN A 26 1 15 HELIX 2 2 ASP A 50 LEU A 59 1 10 HELIX 3 3 PHE A 61 SER A 63 5 3 HELIX 4 4 ILE A 86 GLN A 94 1 9 HELIX 5 5 SER A 113 ALA A 134 1 22 HELIX 6 6 TYR A 172 GLY A 174 5 3 HELIX 7 7 SER A 188 ILE A 200 1 13 HELIX 8 8 ALA A 202 GLU A 204 5 3 HELIX 9 9 TRP A 205 ARG A 208 1 4 HELIX 10 10 GLY A 223 ARG A 232 1 10 HELIX 11 11 ALA A 245 ASP A 250 1 6 HELIX 12 12 LYS A 281 ASN A 295 1 15 HELIX 13 13 LYS A 311 HIS A 330 1 20 SHEET 1 AA 7 GLY A 31 ALA A 33 0 SHEET 2 AA 7 TYR A 41 CYS A 46 -1 O GLU A 45 N PHE A 32 SHEET 3 AA 7 LYS A 3 LEU A 7 -1 O VAL A 4 N TYR A 44 SHEET 4 AA 7 GLN A 69 VAL A 73 -1 O GLN A 69 N LEU A 7 SHEET 5 AA 7 CSS A 157 SER A 163 -1 O TYR A 162 N VAL A 72 SHEET 6 AA 7 VAL A 147 ALA A 154 -1 O VAL A 147 N SER A 163 SHEET 7 AA 7 GLU A 102 VAL A 107 1 O GLU A 102 N VAL A 148 SHEET 1 AB 7 VAL A 254 LEU A 257 0 SHEET 2 AB 7 TRP A 235 VAL A 239 1 O VAL A 236 N THR A 255 SHEET 3 AB 7 TRP A 214 LEU A 218 1 O ALA A 215 N TYR A 237 SHEET 4 AB 7 ILE A 271 CYS A 276 1 N SER A 272 O TRP A 214 SHEET 5 AB 7 GLU A 300 LYS A 306 1 O GLU A 300 N MET A 274 SHEET 6 AB 7 GLU A 347 ILE A 355 -1 O VAL A 348 N LEU A 305 SHEET 7 AB 7 ASN A 333 ARG A 339 -1 O ASN A 333 N ILE A 355 LINK C GLY A 156 N CSS A 157 1555 1555 1.34 LINK C CSS A 157 N CYS A 158 1555 1555 1.33 CISPEP 1 CYS A 221 PRO A 222 0 -2.23 SITE 1 AC1 6 ARG A 34 LYS A 36 TYR A 41 VAL A 42 SITE 2 AC1 6 ILE A 43 HOH A2035 SITE 1 AC2 6 ARG A 85 ASN A 211 ASN A 233 GLN A 253 SITE 2 AC2 6 HOH A2147 HOH A2189 SITE 1 AC3 6 VAL A 96 VAL A 97 GLU A 98 ARG A 145 SITE 2 AC3 6 PRO A 146 TYR A 164 SITE 1 AC4 10 SER A 62 SER A 63 ILE A 65 LEU A 320 SITE 2 AC4 10 GLN A 337 ALA A 338 EDO A1375 HOH A2026 SITE 3 AC4 10 HOH A2190 HOH A2191 SITE 1 AC5 4 PHE A 171 PRO A 176 ARG A 177 HOH A2110 SITE 1 AC6 3 PHE A 264 THR A 267 ARG A 268 SITE 1 AC7 4 PHE A 61 SER A 62 ASN A 167 EDO A1373 SITE 1 AC8 8 THR A 110 ASN A 111 GLU A 112 PRO A 222 SITE 2 AC8 8 PRO A 243 HOH A2041 HOH A2088 HOH A2150 SITE 1 AC9 4 ASP A 109 LYS A 114 HOH A2085 HOH A2192 SITE 1 BC1 5 THR A 21 PHE A 32 ALA A 33 HOH A2017 SITE 2 BC1 5 HOH A2193 SITE 1 BC2 4 LYS A 281 PRO A 308 MET A 309 LYS A 310 SITE 1 BC3 4 ALA A 18 TYR A 313 GLU A 314 HOH A2018 SITE 1 BC4 3 ARG A 34 VAL A 35 EDO A1371 SITE 1 BC5 4 ARG A 34 GLU A 259 ASP A 260 EDO A1370 SITE 1 BC6 7 GLN A 48 PRO A 49 ASP A 50 ASP A 51 SITE 2 BC6 7 HIS A 330 HOH A2046 HOH A2047 SITE 1 BC7 4 ARG A 57 ASN A 167 EDO A1364 EDO A1376 SITE 1 BC8 2 ASP A 22 HOH A2171 SITE 1 BC9 6 SER A 62 SER A 63 ILE A 336 GOL A1361 SITE 2 BC9 6 HOH A2194 HOH A2195 SITE 1 CC1 4 ARG A 57 ASN A 166 ASN A 167 EDO A1373 SITE 1 CC2 3 GLY A 91 MET A 92 HOH A2065 SITE 1 CC3 5 LYS A 99 ARG A 132 ASP A 133 GLY A 135 SITE 2 CC3 5 TYR A 140 SITE 1 CC4 5 PRO A 82 ARG A 85 VAL A 230 ASN A 233 SITE 2 CC4 5 GLN A 253 SITE 1 CC5 4 SER A 269 ILE A 271 GLY A 296 TRP A 356 SITE 1 CC6 4 ILE A 332 ASN A 333 ARG A 354 ILE A 355 SITE 1 CC7 4 ARG A 187 HIS A 343 SO4 A1387 HOH A2122 SITE 1 CC8 1 ASP A 206 SITE 1 CC9 4 LYS A 99 ALA A 138 ASN A 139 TYR A 140 SITE 1 DC1 4 LYS A 118 ARG A 121 LYS A 122 SO4 A1386 SITE 1 DC2 6 ARG A 121 LYS A 122 TRP A 214 ARG A 268 SITE 2 DC2 6 ASN A 270 SO4 A1385 SITE 1 DC3 6 ARG A 187 SER A 188 LYS A 191 ARG A 345 SITE 2 DC3 6 EDO A1382 HOH A2122 CRYST1 92.090 92.090 83.090 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010859 0.006269 0.000000 0.00000 SCALE2 0.000000 0.012539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012035 0.00000