HEADER TRANSFERASE 24-MAY-12 4AVA TITLE CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE RV0998 TITLE 2 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS TRANSFERASE, ALLOSTERIC REGULATION, DOMAIN COUPLING EXPDTA X-RAY DIFFRACTION AUTHOR H.J.LEE,P.T.LANG,S.M.FORTUNE,C.M.SASSETTI,T.ALBER REVDAT 2 22-AUG-12 4AVA 1 JRNL REVDAT 1 11-JUL-12 4AVA 0 JRNL AUTH H.J.LEE,P.T.LANG,S.M.FORTUNE,C.M.SASSETTI,T.ALBER JRNL TITL CYCLIC AMP REGULATION OF PROTEIN LYSINE ACETYLATION IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 811 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22773105 JRNL DOI 10.1038/NSMB.2318 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.698 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.786 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.33 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.30 REMARK 3 NUMBER OF REFLECTIONS : 34696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1927 REMARK 3 R VALUE (WORKING SET) : 0.1908 REMARK 3 FREE R VALUE : 0.2296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8013 - 3.8862 0.90 2682 138 0.1761 0.2256 REMARK 3 2 3.8862 - 3.0848 0.95 2698 128 0.1732 0.1928 REMARK 3 3 3.0848 - 2.6950 0.99 2768 173 0.1896 0.2204 REMARK 3 4 2.6950 - 2.4486 0.99 2796 133 0.1814 0.2481 REMARK 3 5 2.4486 - 2.2731 1.00 2764 155 0.1859 0.2300 REMARK 3 6 2.2731 - 2.1391 1.00 2774 160 0.1874 0.2216 REMARK 3 7 2.1391 - 2.0319 1.00 2750 163 0.1964 0.2199 REMARK 3 8 2.0319 - 1.9435 1.00 2752 145 0.2071 0.2411 REMARK 3 9 1.9435 - 1.8687 1.00 2752 138 0.2320 0.2923 REMARK 3 10 1.8687 - 1.8042 1.00 2756 154 0.2520 0.3006 REMARK 3 11 1.8042 - 1.7478 1.00 2754 138 0.2991 0.3472 REMARK 3 12 1.7478 - 1.6978 0.98 2708 117 0.3554 0.3807 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.345 REMARK 3 B_SOL : 49.098 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.45 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.9229 REMARK 3 B22 (A**2) : -5.2068 REMARK 3 B33 (A**2) : -6.7162 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2620 REMARK 3 ANGLE : 1.411 3559 REMARK 3 CHIRALITY : 0.105 408 REMARK 3 PLANARITY : 0.007 462 REMARK 3 DIHEDRAL : 13.445 971 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 2:41) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1585 17.0401 41.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.2392 REMARK 3 T33: 0.3104 T12: -0.0204 REMARK 3 T13: 0.1258 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.4257 L22: 1.2174 REMARK 3 L33: 1.7358 L12: 0.8685 REMARK 3 L13: -0.9200 L23: -1.0247 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: -0.1869 S13: -0.2998 REMARK 3 S21: -0.1264 S22: -0.1733 S23: -0.1388 REMARK 3 S31: 0.4813 S32: 0.2174 S33: 0.2095 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 42:114) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0787 32.3941 28.1079 REMARK 3 T TENSOR REMARK 3 T11: 0.2731 T22: 0.5601 REMARK 3 T33: 0.2576 T12: -0.0006 REMARK 3 T13: -0.0170 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 2.2721 L22: 1.6527 REMARK 3 L33: 1.6002 L12: -0.1639 REMARK 3 L13: 0.3323 L23: -0.4103 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 1.0048 S13: -0.1558 REMARK 3 S21: -0.4206 S22: -0.0633 S23: 0.1770 REMARK 3 S31: 0.0587 S32: -0.3497 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 115:140) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2820 31.9452 35.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.2118 T22: 0.2579 REMARK 3 T33: 0.2651 T12: 0.0012 REMARK 3 T13: 0.0271 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.3758 L22: 1.4767 REMARK 3 L33: 2.9547 L12: 0.3245 REMARK 3 L13: -0.9921 L23: -1.1060 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.1859 S13: 0.1681 REMARK 3 S21: 0.2019 S22: 0.0165 S23: -0.0319 REMARK 3 S31: -0.2490 S32: 0.1178 S33: -0.0827 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 141:192) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8922 48.6828 28.2398 REMARK 3 T TENSOR REMARK 3 T11: 0.2941 T22: 0.2708 REMARK 3 T33: 0.2169 T12: -0.0204 REMARK 3 T13: 0.0177 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.2297 L22: 2.6373 REMARK 3 L33: 0.2926 L12: 1.4393 REMARK 3 L13: -0.4488 L23: -0.1717 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: -0.4571 S13: -0.0817 REMARK 3 S21: 0.4121 S22: -0.1999 S23: -0.0450 REMARK 3 S31: 0.2354 S32: 0.1884 S33: 0.0795 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 193:216) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6151 45.1402 31.1978 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.2347 REMARK 3 T33: 0.2147 T12: -0.0133 REMARK 3 T13: -0.0171 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.9337 L22: 1.9434 REMARK 3 L33: 0.8996 L12: 0.7375 REMARK 3 L13: -0.3489 L23: -0.0429 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: -0.2101 S13: 0.0324 REMARK 3 S21: 0.2572 S22: -0.0117 S23: -0.0624 REMARK 3 S31: 0.2137 S32: 0.0512 S33: -0.0432 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 217:314) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6112 62.9078 27.6051 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.1775 REMARK 3 T33: 0.2210 T12: 0.0266 REMARK 3 T13: -0.0016 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.3897 L22: 2.5592 REMARK 3 L33: 2.3780 L12: 0.4716 REMARK 3 L13: -0.1505 L23: -0.0897 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.1637 S13: 0.1898 REMARK 3 S21: 0.2137 S22: -0.0305 S23: 0.1597 REMARK 3 S31: -0.4070 S32: -0.0433 S33: 0.0309 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 315:333) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8786 48.0810 17.8891 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2973 REMARK 3 T33: 0.3142 T12: -0.0087 REMARK 3 T13: -0.0832 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.8120 L22: 2.9855 REMARK 3 L33: 4.7934 L12: 0.9192 REMARK 3 L13: -1.2030 L23: -1.8845 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: -0.0397 S13: -0.0595 REMARK 3 S21: -0.4978 S22: 0.2915 S23: 0.5655 REMARK 3 S31: 0.5670 S32: -0.3799 S33: -0.2913 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-12. REMARK 100 THE PDBE ID CODE IS EBI-52469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.70 REMARK 200 RESOLUTION RANGE LOW (A) : 45.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.5 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.8 REMARK 200 R MERGE FOR SHELL (I) : 0.75 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.70900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.88050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.72350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.88050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.70900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.72350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 187 REMARK 465 ALA A 188 REMARK 465 ARG A 189 REMARK 465 VAL A 190 REMARK 465 PRO A 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PEG A 1341 O HOH A 2179 2.15 REMARK 500 O HOH A 2170 O HOH A 2177 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4 PEG A 1340 O HOH A 2161 3755 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 216 -2.65 75.03 REMARK 500 ALA A 331 -63.28 -92.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE A 142 23.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1342 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 214 OD1 REMARK 620 2 HOH A2121 O 85.9 REMARK 620 3 HOH A2158 O 85.4 79.4 REMARK 620 4 HOH A2159 O 99.1 168.2 90.3 REMARK 620 5 HOH A2160 O 94.1 86.7 166.1 103.6 REMARK 620 6 HOH A2242 O 174.2 90.2 98.2 85.5 81.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A1341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AVB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE REMARK 900 RV0998 IN COMPLEX WITH ACETYL COA AND CAMP REMARK 900 RELATED ID: 4AVC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN LYSINE ACETYLTRANSFERASE REMARK 900 RV0998 IN COMPLEX WITH ACETYL COA AND CAMP DBREF 4AVA A 1 333 UNP O05581 O05581_MYCTU 1 333 SEQRES 1 A 333 MET ASP GLY ILE ALA GLU LEU THR GLY ALA ARG VAL GLU SEQRES 2 A 333 ASP LEU ALA GLY MET ASP VAL PHE GLN GLY CYS PRO ALA SEQRES 3 A 333 GLU GLY LEU VAL SER LEU ALA ALA SER VAL GLN PRO LEU SEQRES 4 A 333 ARG ALA ALA ALA GLY GLN VAL LEU LEU ARG GLN GLY GLU SEQRES 5 A 333 PRO ALA VAL SER PHE LEU LEU ILE SER SER GLY SER ALA SEQRES 6 A 333 GLU VAL SER HIS VAL GLY ASP ASP GLY VAL ALA ILE ILE SEQRES 7 A 333 ALA ARG ALA LEU PRO GLY MET ILE VAL GLY GLU ILE ALA SEQRES 8 A 333 LEU LEU ARG ASP SER PRO ARG SER ALA THR VAL THR THR SEQRES 9 A 333 ILE GLU PRO LEU THR GLY TRP THR GLY GLY ARG GLY ALA SEQRES 10 A 333 PHE ALA THR MET VAL HIS ILE PRO GLY VAL GLY GLU ARG SEQRES 11 A 333 LEU LEU ARG THR ALA ARG GLN ARG LEU ALA ALA PHE VAL SEQRES 12 A 333 SER PRO ILE PRO VAL ARG LEU ALA ASP GLY THR GLN LEU SEQRES 13 A 333 MET LEU ARG PRO VAL LEU PRO GLY ASP ARG GLU ARG THR SEQRES 14 A 333 VAL HIS GLY HIS ILE GLN PHE SER GLY GLU THR LEU TYR SEQRES 15 A 333 ARG ARG PHE MET SER ALA ARG VAL PRO SER PRO ALA LEU SEQRES 16 A 333 MET HIS TYR LEU SER GLU VAL ASP TYR VAL ASP HIS PHE SEQRES 17 A 333 VAL TRP VAL VAL THR ASP GLY SER ASP PRO VAL ALA ASP SEQRES 18 A 333 ALA ARG PHE VAL ARG ASP GLU THR ASP PRO THR VAL ALA SEQRES 19 A 333 GLU ILE ALA PHE THR VAL ALA ASP ALA TYR GLN GLY ARG SEQRES 20 A 333 GLY ILE GLY SER PHE LEU ILE GLY ALA LEU SER VAL ALA SEQRES 21 A 333 ALA ARG VAL ASP GLY VAL GLU ARG PHE ALA ALA ARG MET SEQRES 22 A 333 LEU SER ASP ASN VAL PRO MET ARG THR ILE MET ASP ARG SEQRES 23 A 333 TYR GLY ALA VAL TRP GLN ARG GLU ASP VAL GLY VAL ILE SEQRES 24 A 333 THR THR MET ILE ASP VAL PRO GLY PRO GLY GLU LEU SER SEQRES 25 A 333 LEU GLY ARG GLU MET VAL ASP GLN ILE ASN ARG VAL ALA SEQRES 26 A 333 ARG GLN VAL ILE GLU ALA VAL GLY HET ACO A1334 51 HET ACT A1335 4 HET EDO A1336 4 HET EDO A1337 4 HET EDO A1338 4 HET EDO A1339 4 HET PEG A1340 7 HET PEG A1341 7 HET MG A1342 1 HETNAM ACO ACETYL COENZYME *A HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ACO C23 H38 N7 O17 P3 S FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO 4(C2 H6 O2) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 6 MG MG 2+ FORMUL 7 HOH *242(H2 O) HELIX 1 1 ARG A 11 ALA A 16 1 6 HELIX 2 2 GLY A 17 GLN A 22 5 6 HELIX 3 3 PRO A 25 VAL A 36 1 12 HELIX 4 4 GLY A 88 ASP A 95 1 8 HELIX 5 5 GLY A 114 ILE A 124 1 11 HELIX 6 6 GLY A 126 VAL A 143 1 18 HELIX 7 7 ASP A 165 THR A 169 5 5 HELIX 8 8 SER A 177 ARG A 183 1 7 HELIX 9 9 ARG A 184 MET A 186 5 3 HELIX 10 10 SER A 192 ASP A 203 1 12 HELIX 11 11 ASP A 242 GLN A 245 5 4 HELIX 12 12 GLY A 248 ASP A 264 1 17 HELIX 13 13 ASN A 277 ARG A 286 1 10 HELIX 14 14 GLY A 314 ALA A 331 1 18 SHEET 1 AA 4 GLN A 37 ALA A 41 0 SHEET 2 AA 4 LEU A 108 GLY A 113 -1 O LEU A 108 N ALA A 41 SHEET 3 AA 4 PHE A 57 SER A 62 -1 O PHE A 57 N GLY A 113 SHEET 4 AA 4 ILE A 86 VAL A 87 -1 O VAL A 87 N LEU A 58 SHEET 1 AB 4 VAL A 46 LEU A 48 0 SHEET 2 AB 4 THR A 101 THR A 104 -1 O VAL A 102 N LEU A 47 SHEET 3 AB 4 ALA A 65 VAL A 70 -1 O GLU A 66 N THR A 103 SHEET 4 AB 4 ALA A 76 ALA A 81 -1 O ILE A 77 N HIS A 69 SHEET 1 AC 8 ILE A 146 ARG A 149 0 SHEET 2 AC 8 GLN A 155 PRO A 160 -1 O LEU A 156 N VAL A 148 SHEET 3 AC 8 HIS A 207 ASP A 214 -1 O VAL A 211 N ARG A 159 SHEET 4 AC 8 ASP A 217 ARG A 226 -1 O ASP A 217 N ASP A 214 SHEET 5 AC 8 VAL A 233 VAL A 240 -1 O GLU A 235 N VAL A 225 SHEET 6 AC 8 ARG A 268 LEU A 274 1 O ARG A 268 N ALA A 234 SHEET 7 AC 8 VAL A 298 ASP A 304 -1 O ILE A 299 N MET A 273 SHEET 8 AC 8 GLN A 292 ARG A 293 -1 O GLN A 292 N THR A 300 LINK MG MG A1342 OD1 ASP A 214 1555 1555 2.04 LINK MG MG A1342 O HOH A2121 1555 1555 2.31 LINK MG MG A1342 O HOH A2158 1555 1555 2.20 LINK MG MG A1342 O HOH A2159 1555 1555 2.29 LINK MG MG A1342 O HOH A2160 1555 1555 2.23 LINK MG MG A1342 O HOH A2242 1555 1555 2.14 SITE 1 AC1 36 ARG A 136 ALA A 140 VAL A 143 PRO A 145 SITE 2 AC1 36 HIS A 173 ILE A 236 ALA A 237 PHE A 238 SITE 3 AC1 36 THR A 239 VAL A 240 GLN A 245 GLY A 246 SITE 4 AC1 36 ARG A 247 GLY A 248 ILE A 249 GLY A 250 SITE 5 AC1 36 SER A 251 ARG A 272 ASN A 277 PRO A 279 SITE 6 AC1 36 MET A 280 THR A 282 ILE A 283 ARG A 286 SITE 7 AC1 36 EDO A1337 PEG A1341 HOH A2108 HOH A2172 SITE 8 AC1 36 HOH A2178 HOH A2179 HOH A2184 HOH A2185 SITE 9 AC1 36 HOH A2198 HOH A2200 HOH A2237 HOH A2239 SITE 1 AC2 5 HIS A 173 HOH A2048 HOH A2193 HOH A2240 SITE 2 AC2 5 HOH A2241 SITE 1 AC3 5 GLU A 167 ALA A 220 ASP A 221 ALA A 241 SITE 2 AC3 5 HOH A2130 SITE 1 AC4 4 ARG A 286 SER A 312 ACO A1334 HOH A2215 SITE 1 AC5 7 PRO A 145 PRO A 147 SER A 275 ASP A 276 SITE 2 AC5 7 VAL A 278 HOH A2029 HOH A2196 SITE 1 AC6 12 ASP A 95 HIS A 171 GLY A 172 HIS A 173 SITE 2 AC6 12 ALA A 237 THR A 239 HOH A2055 HOH A2134 SITE 3 AC6 12 HOH A2139 HOH A2162 HOH A2166 HOH A2240 SITE 1 AC7 9 GLY A 215 ARG A 281 ASP A 285 TRP A 291 SITE 2 AC7 9 HOH A2158 HOH A2159 HOH A2161 HOH A2203 SITE 3 AC7 9 HOH A2208 SITE 1 AC8 7 ARG A 133 ARG A 136 GLN A 137 ALA A 140 SITE 2 AC8 7 GLY A 246 ACO A1334 HOH A2179 SITE 1 AC9 6 ASP A 214 HOH A2121 HOH A2158 HOH A2159 SITE 2 AC9 6 HOH A2160 HOH A2242 CRYST1 61.418 65.447 77.761 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012860 0.00000