data_4AVD # _entry.id 4AVD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4AVD pdb_00004avd 10.2210/pdb4avd/pdb PDBE EBI-52649 ? ? WWPDB D_1290052649 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1KR7 unspecified 'CRYSTAL STRUCTURE OF THE NERVE TISSUE MINI-HEMOGLOBIN FROMTHE NEMERTEAN WORM CEREBRATULUS LACTEUS' PDB 1V07 unspecified 'CRYSTAL STRUCTURE OF THRE11VAL MUTANT OF THE NERVE TISSUE MINI-HEMOGLOBIN FROM THE NEMERTEAN WORM CEREBRATULUS LACTEUS' PDB 2VYY unspecified 'MUTANT ALA55TRP OF CEREBRATULS LACTEUS MINI-HEMOGLOBIN' PDB 2VYZ unspecified 'MUTANT ALA55PHE OF CEREBRATULUS LACTEUS MINI-HEMOGLOBIN' PDB 2XKG unspecified 'C.LACTEUS MINI-HB LEU86ALA MUTANT' PDB 2XKH unspecified 'XE DERIVATIVE OF C.LACTEUS MINI-HB LEU86ALA MUTANT' PDB 2XKI unspecified 'AQUO-MET STRUCTURE OF C.LACTEUS MINI-HB' PDB 4AVE unspecified 'C.LACTEUS NERVE HB IN THE DEOXY FORM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AVD _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-05-25 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Germani, F.' 1 'Pesce, A.' 2 'Venturini, A.' 3 'Moens, L.' 4 'Bolognesi, M.' 5 'Dewilde, S.' 6 'Nardini, M.' 7 # _citation.id primary _citation.title 'High Resolution Crystal Structures of the Cerebratulus Lacteus Mini-Hb in the Unligated and Carbomonoxy States.' _citation.journal_abbrev Int.J.Mol.Sci. _citation.journal_volume 13 _citation.page_first 8025 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM ? _citation.country CH _citation.journal_id_ISSN 1422-0067 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22942687 _citation.pdbx_database_id_DOI 10.3390/IJMS13078025 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Germani, F.' 1 ? primary 'Pesce, A.' 2 ? primary 'Venturini, A.' 3 ? primary 'Moens, L.' 4 ? primary 'Bolognesi, M.' 5 ? primary 'Dewilde, S.' 6 ? primary 'Nardini, M.' 7 ? # _cell.entry_id 4AVD _cell.length_a 42.660 _cell.length_b 43.480 _cell.length_c 60.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AVD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NEURAL HEMOGLOBIN' 11546.949 1 ? ? ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'CARBON MONOXIDE' 28.010 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 6 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 7 water nat water 18.015 123 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NRHB # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVNWAAVVDDFYQELFKAHPEYQNKFGFKGVALGSLKGNAAYKTQAGKTVDYINAAIGGSADAAGLASRHKGRNVGSAEF HNAKACLAKACSAHGAPDLGHAIDDILSHL ; _entity_poly.pdbx_seq_one_letter_code_can ;MVNWAAVVDDFYQELFKAHPEYQNKFGFKGVALGSLKGNAAYKTQAGKTVDYINAAIGGSADAAGLASRHKGRNVGSAEF HNAKACLAKACSAHGAPDLGHAIDDILSHL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 ASN n 1 4 TRP n 1 5 ALA n 1 6 ALA n 1 7 VAL n 1 8 VAL n 1 9 ASP n 1 10 ASP n 1 11 PHE n 1 12 TYR n 1 13 GLN n 1 14 GLU n 1 15 LEU n 1 16 PHE n 1 17 LYS n 1 18 ALA n 1 19 HIS n 1 20 PRO n 1 21 GLU n 1 22 TYR n 1 23 GLN n 1 24 ASN n 1 25 LYS n 1 26 PHE n 1 27 GLY n 1 28 PHE n 1 29 LYS n 1 30 GLY n 1 31 VAL n 1 32 ALA n 1 33 LEU n 1 34 GLY n 1 35 SER n 1 36 LEU n 1 37 LYS n 1 38 GLY n 1 39 ASN n 1 40 ALA n 1 41 ALA n 1 42 TYR n 1 43 LYS n 1 44 THR n 1 45 GLN n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 THR n 1 50 VAL n 1 51 ASP n 1 52 TYR n 1 53 ILE n 1 54 ASN n 1 55 ALA n 1 56 ALA n 1 57 ILE n 1 58 GLY n 1 59 GLY n 1 60 SER n 1 61 ALA n 1 62 ASP n 1 63 ALA n 1 64 ALA n 1 65 GLY n 1 66 LEU n 1 67 ALA n 1 68 SER n 1 69 ARG n 1 70 HIS n 1 71 LYS n 1 72 GLY n 1 73 ARG n 1 74 ASN n 1 75 VAL n 1 76 GLY n 1 77 SER n 1 78 ALA n 1 79 GLU n 1 80 PHE n 1 81 HIS n 1 82 ASN n 1 83 ALA n 1 84 LYS n 1 85 ALA n 1 86 CYS n 1 87 LEU n 1 88 ALA n 1 89 LYS n 1 90 ALA n 1 91 CYS n 1 92 SER n 1 93 ALA n 1 94 HIS n 1 95 GLY n 1 96 ALA n 1 97 PRO n 1 98 ASP n 1 99 LEU n 1 100 GLY n 1 101 HIS n 1 102 ALA n 1 103 ILE n 1 104 ASP n 1 105 ASP n 1 106 ILE n 1 107 LEU n 1 108 SER n 1 109 HIS n 1 110 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'MILKY RIBBON-WORM' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'CEREBRATULUS LACTEUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6221 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GLBN_CERLA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession O76242 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4AVD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O76242 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 110 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 109 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CMO non-polymer . 'CARBON MONOXIDE' ? 'C O' 28.010 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4AVD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 52 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2.6 M AMMONIUM SULFATE, 50 MM SODIUM ACETATE PH 5.5, AT 277 K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-10-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_wavelength 0.9 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AVD _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.50 _reflns.d_resolution_high 1.50 _reflns.number_obs 18465 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.58 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.70 _reflns_shell.pdbx_redundancy 7.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AVD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17471 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.73 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.52 _refine.ls_R_factor_obs 0.14713 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.14549 _refine.ls_R_factor_R_free 0.17876 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 948 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.B_iso_mean 15.216 _refine.aniso_B[1][1] -0.11 _refine.aniso_B[2][2] 0.07 _refine.aniso_B[3][3] 0.04 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1KR7' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.079 _refine.pdbx_overall_ESU_R_Free 0.066 _refine.overall_SU_ML 0.035 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.011 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 814 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 65 _refine_hist.number_atoms_solvent 123 _refine_hist.number_atoms_total 1002 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 24.73 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.021 ? 929 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.245 2.097 ? 1274 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.586 5.000 ? 117 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.722 24.737 ? 38 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.147 15.000 ? 134 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 31.691 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 124 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 719 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.198 1.500 ? 559 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.011 2.000 ? 872 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.117 3.000 ? 370 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.589 4.500 ? 397 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.430 3.000 ? 929 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.500 _refine_ls_shell.d_res_low 1.539 _refine_ls_shell.number_reflns_R_work 1276 _refine_ls_shell.R_factor_R_work 0.131 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.152 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 4AVD _struct.title 'C.lacteus nerve Hb in complex with CO' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AVD _struct_keywords.pdbx_keywords 'OXYGEN TRANSPORT' _struct_keywords.text 'OXYGEN TRANSPORT, NERVE GLOBIN, HEME REACTIVITY, CARBON MONOXIDE, PROTEIN MATRIX TUNNEL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? H N N 7 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 3 ? HIS A 19 ? ASN A 2 HIS A 18 1 ? 17 HELX_P HELX_P2 2 PRO A 20 ? PHE A 26 ? PRO A 19 PHE A 25 5 ? 7 HELX_P HELX_P3 3 ALA A 32 ? GLY A 38 ? ALA A 31 GLY A 37 5 ? 7 HELX_P HELX_P4 4 ASN A 39 ? GLY A 58 ? ASN A 38 GLY A 57 1 ? 20 HELX_P HELX_P5 5 ASP A 62 ? GLY A 72 ? ASP A 61 GLY A 71 1 ? 11 HELX_P HELX_P6 6 GLY A 76 ? HIS A 94 ? GLY A 75 HIS A 93 1 ? 19 HELX_P HELX_P7 7 LEU A 99 ? SER A 108 ? LEU A 98 SER A 107 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id metalc1 _struct_conn.conn_type_id metalc _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 70 _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id FE _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 144 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.062 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HEM 144 ? 22 'BINDING SITE FOR RESIDUE HEM A 144' AC2 Software A CMO 1110 ? 4 'BINDING SITE FOR RESIDUE CMO A 1110' AC3 Software A GOL 1112 ? 11 'BINDING SITE FOR RESIDUE GOL A 1112' AC4 Software A SO4 1113 ? 6 'BINDING SITE FOR RESIDUE SO4 A 1113' AC5 Software A SO4 1114 ? 11 'BINDING SITE FOR RESIDUE SO4 A 1114' AC6 Software A ACT 1115 ? 2 'BINDING SITE FOR RESIDUE ACT A 1115' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 MET A 1 ? MET A 0 . ? 3_655 ? 2 AC1 22 PHE A 11 ? PHE A 10 . ? 1_555 ? 3 AC1 22 TYR A 22 ? TYR A 21 . ? 1_555 ? 4 AC1 22 LYS A 25 ? LYS A 24 . ? 1_555 ? 5 AC1 22 PHE A 26 ? PHE A 25 . ? 1_555 ? 6 AC1 22 GLN A 45 ? GLN A 44 . ? 1_555 ? 7 AC1 22 LYS A 48 ? LYS A 47 . ? 1_555 ? 8 AC1 22 LEU A 66 ? LEU A 65 . ? 1_555 ? 9 AC1 22 ARG A 69 ? ARG A 68 . ? 1_555 ? 10 AC1 22 HIS A 70 ? HIS A 69 . ? 1_555 ? 11 AC1 22 ARG A 73 ? ARG A 72 . ? 1_555 ? 12 AC1 22 VAL A 75 ? VAL A 74 . ? 1_555 ? 13 AC1 22 GLU A 79 ? GLU A 78 . ? 1_555 ? 14 AC1 22 PHE A 80 ? PHE A 79 . ? 1_555 ? 15 AC1 22 ALA A 83 ? ALA A 82 . ? 1_555 ? 16 AC1 22 ILE A 103 ? ILE A 102 . ? 1_555 ? 17 AC1 22 CMO C . ? CMO A 1110 . ? 1_555 ? 18 AC1 22 SO4 F . ? SO4 A 1114 . ? 1_555 ? 19 AC1 22 HOH H . ? HOH A 2036 . ? 1_555 ? 20 AC1 22 HOH H . ? HOH A 2042 . ? 1_555 ? 21 AC1 22 HOH H . ? HOH A 2120 . ? 1_555 ? 22 AC1 22 HOH H . ? HOH A 2122 . ? 1_555 ? 23 AC2 4 TYR A 12 ? TYR A 11 . ? 1_555 ? 24 AC2 4 PHE A 26 ? PHE A 25 . ? 1_555 ? 25 AC2 4 GLN A 45 ? GLN A 44 . ? 1_555 ? 26 AC2 4 HEM B . ? HEM A 144 . ? 1_555 ? 27 AC3 11 VAL A 2 ? VAL A 1 . ? 1_555 ? 28 AC3 11 ASN A 3 ? ASN A 2 . ? 1_555 ? 29 AC3 11 TRP A 4 ? TRP A 3 . ? 1_555 ? 30 AC3 11 ALA A 5 ? ALA A 4 . ? 1_555 ? 31 AC3 11 VAL A 50 ? VAL A 49 . ? 1_555 ? 32 AC3 11 ASN A 54 ? ASN A 53 . ? 1_555 ? 33 AC3 11 ASP A 62 ? ASP A 61 . ? 3_645 ? 34 AC3 11 GLY A 65 ? GLY A 64 . ? 3_645 ? 35 AC3 11 ARG A 69 ? ARG A 68 . ? 3_645 ? 36 AC3 11 HOH H . ? HOH A 2123 . ? 1_555 ? 37 AC3 11 HOH H . ? HOH A 2124 . ? 1_555 ? 38 AC4 6 HIS A 19 ? HIS A 18 . ? 1_555 ? 39 AC4 6 GLU A 21 ? GLU A 20 . ? 1_555 ? 40 AC4 6 ALA A 40 ? ALA A 39 . ? 4_455 ? 41 AC4 6 LYS A 43 ? LYS A 42 . ? 4_455 ? 42 AC4 6 HOH H . ? HOH A 2027 . ? 1_555 ? 43 AC4 6 HOH H . ? HOH A 2100 . ? 1_555 ? 44 AC5 11 MET A 1 ? MET A 0 . ? 3_655 ? 45 AC5 11 VAL A 2 ? VAL A 1 . ? 3_655 ? 46 AC5 11 TRP A 4 ? TRP A 3 . ? 3_655 ? 47 AC5 11 ALA A 32 ? ALA A 31 . ? 4_555 ? 48 AC5 11 ARG A 69 ? ARG A 68 . ? 1_555 ? 49 AC5 11 HEM B . ? HEM A 144 . ? 1_555 ? 50 AC5 11 HOH H . ? HOH A 2048 . ? 4_555 ? 51 AC5 11 HOH H . ? HOH A 2054 . ? 4_555 ? 52 AC5 11 HOH H . ? HOH A 2068 . ? 1_555 ? 53 AC5 11 HOH H . ? HOH A 2125 . ? 1_555 ? 54 AC5 11 HOH H . ? HOH A 2126 . ? 1_555 ? 55 AC6 2 ASN A 3 ? ASN A 2 . ? 1_555 ? 56 AC6 2 HIS A 94 ? HIS A 93 . ? 1_555 ? # _database_PDB_matrix.entry_id 4AVD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AVD _atom_sites.fract_transf_matrix[1][1] 0.023441 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022999 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016628 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 0 0 MET MET A . n A 1 2 VAL 2 1 1 VAL VAL A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 TRP 4 3 3 TRP TRP A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 ALA 6 5 5 ALA ALA A . n A 1 7 VAL 7 6 6 VAL VAL A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 ASP 9 8 8 ASP ASP A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 TYR 12 11 11 TYR TYR A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 GLU 14 13 13 GLU GLU A . n A 1 15 LEU 15 14 14 LEU LEU A . n A 1 16 PHE 16 15 15 PHE PHE A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ALA 18 17 17 ALA ALA A . n A 1 19 HIS 19 18 18 HIS HIS A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 TYR 22 21 21 TYR TYR A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 PHE 26 25 25 PHE PHE A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 PHE 28 27 27 PHE PHE A . n A 1 29 LYS 29 28 28 LYS LYS A . n A 1 30 GLY 30 29 29 GLY GLY A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 ALA 32 31 31 ALA ALA A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 LYS 37 36 36 LYS LYS A . n A 1 38 GLY 38 37 37 GLY GLY A . n A 1 39 ASN 39 38 38 ASN ASN A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 TYR 42 41 41 TYR TYR A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 THR 44 43 43 THR THR A . n A 1 45 GLN 45 44 44 GLN GLN A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 THR 49 48 48 THR THR A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 ASP 51 50 50 ASP ASP A . n A 1 52 TYR 52 51 51 TYR TYR A . n A 1 53 ILE 53 52 52 ILE ILE A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 GLY 58 57 57 GLY GLY A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 ALA 61 60 60 ALA ALA A . n A 1 62 ASP 62 61 61 ASP ASP A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 ALA 64 63 63 ALA ALA A . n A 1 65 GLY 65 64 64 GLY GLY A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 HIS 70 69 69 HIS HIS A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 ARG 73 72 72 ARG ARG A . n A 1 74 ASN 74 73 73 ASN ASN A . n A 1 75 VAL 75 74 74 VAL VAL A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 SER 77 76 76 SER SER A . n A 1 78 ALA 78 77 77 ALA ALA A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 PHE 80 79 79 PHE PHE A . n A 1 81 HIS 81 80 80 HIS HIS A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 CYS 86 85 85 CYS CYS A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 CYS 91 90 90 CYS CYS A . n A 1 92 SER 92 91 91 SER SER A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 GLY 95 94 94 GLY GLY A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 ASP 98 97 97 ASP ASP A . n A 1 99 LEU 99 98 98 LEU LEU A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 HIS 101 100 100 HIS HIS A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 ASP 105 104 104 ASP ASP A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 HIS 109 108 108 HIS HIS A . n A 1 110 LEU 110 109 109 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 144 144 HEM HEM A . C 3 CMO 1 1110 1110 CMO CMO A . D 4 GOL 1 1112 1112 GOL GOL A . E 5 SO4 1 1113 1113 SO4 SO4 A . F 5 SO4 1 1114 1114 SO4 SO4 A . G 6 ACT 1 1115 1115 ACT ACT A . H 7 HOH 1 2001 2001 HOH HOH A . H 7 HOH 2 2002 2002 HOH HOH A . H 7 HOH 3 2003 2003 HOH HOH A . H 7 HOH 4 2004 2004 HOH HOH A . H 7 HOH 5 2005 2005 HOH HOH A . H 7 HOH 6 2006 2006 HOH HOH A . H 7 HOH 7 2007 2007 HOH HOH A . H 7 HOH 8 2008 2008 HOH HOH A . H 7 HOH 9 2009 2009 HOH HOH A . H 7 HOH 10 2010 2010 HOH HOH A . H 7 HOH 11 2011 2011 HOH HOH A . H 7 HOH 12 2012 2012 HOH HOH A . H 7 HOH 13 2013 2013 HOH HOH A . H 7 HOH 14 2014 2014 HOH HOH A . H 7 HOH 15 2015 2015 HOH HOH A . H 7 HOH 16 2016 2016 HOH HOH A . H 7 HOH 17 2017 2017 HOH HOH A . H 7 HOH 18 2018 2018 HOH HOH A . H 7 HOH 19 2019 2019 HOH HOH A . H 7 HOH 20 2020 2020 HOH HOH A . H 7 HOH 21 2021 2021 HOH HOH A . H 7 HOH 22 2022 2022 HOH HOH A . H 7 HOH 23 2023 2023 HOH HOH A . H 7 HOH 24 2024 2024 HOH HOH A . H 7 HOH 25 2025 2025 HOH HOH A . H 7 HOH 26 2026 2026 HOH HOH A . H 7 HOH 27 2027 2027 HOH HOH A . H 7 HOH 28 2028 2028 HOH HOH A . H 7 HOH 29 2029 2029 HOH HOH A . H 7 HOH 30 2030 2030 HOH HOH A . H 7 HOH 31 2031 2031 HOH HOH A . H 7 HOH 32 2032 2032 HOH HOH A . H 7 HOH 33 2033 2033 HOH HOH A . H 7 HOH 34 2034 2034 HOH HOH A . H 7 HOH 35 2035 2035 HOH HOH A . H 7 HOH 36 2036 2036 HOH HOH A . H 7 HOH 37 2037 2037 HOH HOH A . H 7 HOH 38 2038 2038 HOH HOH A . H 7 HOH 39 2039 2039 HOH HOH A . H 7 HOH 40 2041 2041 HOH HOH A . H 7 HOH 41 2042 2042 HOH HOH A . H 7 HOH 42 2043 2043 HOH HOH A . H 7 HOH 43 2044 2044 HOH HOH A . H 7 HOH 44 2045 2045 HOH HOH A . H 7 HOH 45 2046 2046 HOH HOH A . H 7 HOH 46 2047 2047 HOH HOH A . H 7 HOH 47 2048 2048 HOH HOH A . H 7 HOH 48 2049 2049 HOH HOH A . H 7 HOH 49 2050 2050 HOH HOH A . H 7 HOH 50 2051 2051 HOH HOH A . H 7 HOH 51 2052 2052 HOH HOH A . H 7 HOH 52 2053 2053 HOH HOH A . H 7 HOH 53 2054 2054 HOH HOH A . H 7 HOH 54 2055 2055 HOH HOH A . H 7 HOH 55 2056 2056 HOH HOH A . H 7 HOH 56 2057 2057 HOH HOH A . H 7 HOH 57 2058 2058 HOH HOH A . H 7 HOH 58 2059 2059 HOH HOH A . H 7 HOH 59 2060 2060 HOH HOH A . H 7 HOH 60 2061 2061 HOH HOH A . H 7 HOH 61 2062 2062 HOH HOH A . H 7 HOH 62 2063 2063 HOH HOH A . H 7 HOH 63 2064 2064 HOH HOH A . H 7 HOH 64 2065 2065 HOH HOH A . H 7 HOH 65 2066 2066 HOH HOH A . H 7 HOH 66 2067 2067 HOH HOH A . H 7 HOH 67 2068 2068 HOH HOH A . H 7 HOH 68 2069 2069 HOH HOH A . H 7 HOH 69 2070 2070 HOH HOH A . H 7 HOH 70 2071 2071 HOH HOH A . H 7 HOH 71 2072 2072 HOH HOH A . H 7 HOH 72 2073 2073 HOH HOH A . H 7 HOH 73 2074 2074 HOH HOH A . H 7 HOH 74 2076 2076 HOH HOH A . H 7 HOH 75 2077 2077 HOH HOH A . H 7 HOH 76 2078 2078 HOH HOH A . H 7 HOH 77 2079 2079 HOH HOH A . H 7 HOH 78 2080 2080 HOH HOH A . H 7 HOH 79 2081 2081 HOH HOH A . H 7 HOH 80 2082 2082 HOH HOH A . H 7 HOH 81 2083 2083 HOH HOH A . H 7 HOH 82 2084 2084 HOH HOH A . H 7 HOH 83 2085 2085 HOH HOH A . H 7 HOH 84 2086 2086 HOH HOH A . H 7 HOH 85 2087 2087 HOH HOH A . H 7 HOH 86 2088 2088 HOH HOH A . H 7 HOH 87 2089 2089 HOH HOH A . H 7 HOH 88 2090 2090 HOH HOH A . H 7 HOH 89 2091 2091 HOH HOH A . H 7 HOH 90 2092 2092 HOH HOH A . H 7 HOH 91 2093 2093 HOH HOH A . H 7 HOH 92 2095 2095 HOH HOH A . H 7 HOH 93 2096 2096 HOH HOH A . H 7 HOH 94 2097 2097 HOH HOH A . H 7 HOH 95 2098 2098 HOH HOH A . H 7 HOH 96 2099 2099 HOH HOH A . H 7 HOH 97 2100 2100 HOH HOH A . H 7 HOH 98 2101 2101 HOH HOH A . H 7 HOH 99 2102 2102 HOH HOH A . H 7 HOH 100 2103 2103 HOH HOH A . H 7 HOH 101 2104 2104 HOH HOH A . H 7 HOH 102 2105 2105 HOH HOH A . H 7 HOH 103 2106 2106 HOH HOH A . H 7 HOH 104 2107 2107 HOH HOH A . H 7 HOH 105 2108 2108 HOH HOH A . H 7 HOH 106 2109 2109 HOH HOH A . H 7 HOH 107 2110 2110 HOH HOH A . H 7 HOH 108 2111 2111 HOH HOH A . H 7 HOH 109 2112 2112 HOH HOH A . H 7 HOH 110 2113 2113 HOH HOH A . H 7 HOH 111 2115 2115 HOH HOH A . H 7 HOH 112 2116 2116 HOH HOH A . H 7 HOH 113 2117 2117 HOH HOH A . H 7 HOH 114 2118 2118 HOH HOH A . H 7 HOH 115 2119 2119 HOH HOH A . H 7 HOH 116 2120 2120 HOH HOH A . H 7 HOH 117 2121 2121 HOH HOH A . H 7 HOH 118 2122 2122 HOH HOH A . H 7 HOH 119 2123 2123 HOH HOH A . H 7 HOH 120 2124 2124 HOH HOH A . H 7 HOH 121 2125 2125 HOH HOH A . H 7 HOH 122 2126 2126 HOH HOH A . H 7 HOH 123 2127 2127 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NA ? B HEM . ? A HEM 144 ? 1_555 88.9 ? 2 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NB ? B HEM . ? A HEM 144 ? 1_555 91.6 ? 3 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NB ? B HEM . ? A HEM 144 ? 1_555 90.9 ? 4 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NC ? B HEM . ? A HEM 144 ? 1_555 90.0 ? 5 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NC ? B HEM . ? A HEM 144 ? 1_555 178.8 ? 6 NB ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 NC ? B HEM . ? A HEM 144 ? 1_555 89.3 ? 7 NE2 ? A HIS 70 ? A HIS 69 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 87.9 ? 8 NA ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 89.0 ? 9 NB ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 179.5 ? 10 NC ? B HEM . ? A HEM 144 ? 1_555 FE ? B HEM . ? A HEM 144 ? 1_555 ND ? B HEM . ? A HEM 144 ? 1_555 90.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-17 2 'Structure model' 1 1 2014-02-05 3 'Structure model' 1 2 2019-03-06 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Experimental preparation' 5 3 'Structure model' Other 6 4 'Structure model' Advisory 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 4 'Structure model' Other 11 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' pdbx_struct_conn_angle 10 4 'Structure model' pdbx_validate_close_contact 11 4 'Structure model' struct_conn 12 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.temp' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_sf' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 FE _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HEM _pdbx_validate_close_contact.auth_seq_id_1 144 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 CMO _pdbx_validate_close_contact.auth_seq_id_2 1110 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CMO C C N N 81 CMO O O N N 82 CYS N N N N 83 CYS CA C N R 84 CYS C C N N 85 CYS O O N N 86 CYS CB C N N 87 CYS SG S N N 88 CYS OXT O N N 89 CYS H H N N 90 CYS H2 H N N 91 CYS HA H N N 92 CYS HB2 H N N 93 CYS HB3 H N N 94 CYS HG H N N 95 CYS HXT H N N 96 GLN N N N N 97 GLN CA C N S 98 GLN C C N N 99 GLN O O N N 100 GLN CB C N N 101 GLN CG C N N 102 GLN CD C N N 103 GLN OE1 O N N 104 GLN NE2 N N N 105 GLN OXT O N N 106 GLN H H N N 107 GLN H2 H N N 108 GLN HA H N N 109 GLN HB2 H N N 110 GLN HB3 H N N 111 GLN HG2 H N N 112 GLN HG3 H N N 113 GLN HE21 H N N 114 GLN HE22 H N N 115 GLN HXT H N N 116 GLU N N N N 117 GLU CA C N S 118 GLU C C N N 119 GLU O O N N 120 GLU CB C N N 121 GLU CG C N N 122 GLU CD C N N 123 GLU OE1 O N N 124 GLU OE2 O N N 125 GLU OXT O N N 126 GLU H H N N 127 GLU H2 H N N 128 GLU HA H N N 129 GLU HB2 H N N 130 GLU HB3 H N N 131 GLU HG2 H N N 132 GLU HG3 H N N 133 GLU HE2 H N N 134 GLU HXT H N N 135 GLY N N N N 136 GLY CA C N N 137 GLY C C N N 138 GLY O O N N 139 GLY OXT O N N 140 GLY H H N N 141 GLY H2 H N N 142 GLY HA2 H N N 143 GLY HA3 H N N 144 GLY HXT H N N 145 GOL C1 C N N 146 GOL O1 O N N 147 GOL C2 C N N 148 GOL O2 O N N 149 GOL C3 C N N 150 GOL O3 O N N 151 GOL H11 H N N 152 GOL H12 H N N 153 GOL HO1 H N N 154 GOL H2 H N N 155 GOL HO2 H N N 156 GOL H31 H N N 157 GOL H32 H N N 158 GOL HO3 H N N 159 HEM CHA C N N 160 HEM CHB C N N 161 HEM CHC C N N 162 HEM CHD C N N 163 HEM C1A C Y N 164 HEM C2A C Y N 165 HEM C3A C Y N 166 HEM C4A C Y N 167 HEM CMA C N N 168 HEM CAA C N N 169 HEM CBA C N N 170 HEM CGA C N N 171 HEM O1A O N N 172 HEM O2A O N N 173 HEM C1B C N N 174 HEM C2B C N N 175 HEM C3B C N N 176 HEM C4B C N N 177 HEM CMB C N N 178 HEM CAB C N N 179 HEM CBB C N N 180 HEM C1C C Y N 181 HEM C2C C Y N 182 HEM C3C C Y N 183 HEM C4C C Y N 184 HEM CMC C N N 185 HEM CAC C N N 186 HEM CBC C N N 187 HEM C1D C N N 188 HEM C2D C N N 189 HEM C3D C N N 190 HEM C4D C N N 191 HEM CMD C N N 192 HEM CAD C N N 193 HEM CBD C N N 194 HEM CGD C N N 195 HEM O1D O N N 196 HEM O2D O N N 197 HEM NA N Y N 198 HEM NB N N N 199 HEM NC N Y N 200 HEM ND N N N 201 HEM FE FE N N 202 HEM HHB H N N 203 HEM HHC H N N 204 HEM HHD H N N 205 HEM HMA H N N 206 HEM HMAA H N N 207 HEM HMAB H N N 208 HEM HAA H N N 209 HEM HAAA H N N 210 HEM HBA H N N 211 HEM HBAA H N N 212 HEM HMB H N N 213 HEM HMBA H N N 214 HEM HMBB H N N 215 HEM HAB H N N 216 HEM HBB H N N 217 HEM HBBA H N N 218 HEM HMC H N N 219 HEM HMCA H N N 220 HEM HMCB H N N 221 HEM HAC H N N 222 HEM HBC H N N 223 HEM HBCA H N N 224 HEM HMD H N N 225 HEM HMDA H N N 226 HEM HMDB H N N 227 HEM HAD H N N 228 HEM HADA H N N 229 HEM HBD H N N 230 HEM HBDA H N N 231 HEM H2A H N N 232 HEM H2D H N N 233 HEM HHA H N N 234 HIS N N N N 235 HIS CA C N S 236 HIS C C N N 237 HIS O O N N 238 HIS CB C N N 239 HIS CG C Y N 240 HIS ND1 N Y N 241 HIS CD2 C Y N 242 HIS CE1 C Y N 243 HIS NE2 N Y N 244 HIS OXT O N N 245 HIS H H N N 246 HIS H2 H N N 247 HIS HA H N N 248 HIS HB2 H N N 249 HIS HB3 H N N 250 HIS HD1 H N N 251 HIS HD2 H N N 252 HIS HE1 H N N 253 HIS HE2 H N N 254 HIS HXT H N N 255 HOH O O N N 256 HOH H1 H N N 257 HOH H2 H N N 258 ILE N N N N 259 ILE CA C N S 260 ILE C C N N 261 ILE O O N N 262 ILE CB C N S 263 ILE CG1 C N N 264 ILE CG2 C N N 265 ILE CD1 C N N 266 ILE OXT O N N 267 ILE H H N N 268 ILE H2 H N N 269 ILE HA H N N 270 ILE HB H N N 271 ILE HG12 H N N 272 ILE HG13 H N N 273 ILE HG21 H N N 274 ILE HG22 H N N 275 ILE HG23 H N N 276 ILE HD11 H N N 277 ILE HD12 H N N 278 ILE HD13 H N N 279 ILE HXT H N N 280 LEU N N N N 281 LEU CA C N S 282 LEU C C N N 283 LEU O O N N 284 LEU CB C N N 285 LEU CG C N N 286 LEU CD1 C N N 287 LEU CD2 C N N 288 LEU OXT O N N 289 LEU H H N N 290 LEU H2 H N N 291 LEU HA H N N 292 LEU HB2 H N N 293 LEU HB3 H N N 294 LEU HG H N N 295 LEU HD11 H N N 296 LEU HD12 H N N 297 LEU HD13 H N N 298 LEU HD21 H N N 299 LEU HD22 H N N 300 LEU HD23 H N N 301 LEU HXT H N N 302 LYS N N N N 303 LYS CA C N S 304 LYS C C N N 305 LYS O O N N 306 LYS CB C N N 307 LYS CG C N N 308 LYS CD C N N 309 LYS CE C N N 310 LYS NZ N N N 311 LYS OXT O N N 312 LYS H H N N 313 LYS H2 H N N 314 LYS HA H N N 315 LYS HB2 H N N 316 LYS HB3 H N N 317 LYS HG2 H N N 318 LYS HG3 H N N 319 LYS HD2 H N N 320 LYS HD3 H N N 321 LYS HE2 H N N 322 LYS HE3 H N N 323 LYS HZ1 H N N 324 LYS HZ2 H N N 325 LYS HZ3 H N N 326 LYS HXT H N N 327 MET N N N N 328 MET CA C N S 329 MET C C N N 330 MET O O N N 331 MET CB C N N 332 MET CG C N N 333 MET SD S N N 334 MET CE C N N 335 MET OXT O N N 336 MET H H N N 337 MET H2 H N N 338 MET HA H N N 339 MET HB2 H N N 340 MET HB3 H N N 341 MET HG2 H N N 342 MET HG3 H N N 343 MET HE1 H N N 344 MET HE2 H N N 345 MET HE3 H N N 346 MET HXT H N N 347 PHE N N N N 348 PHE CA C N S 349 PHE C C N N 350 PHE O O N N 351 PHE CB C N N 352 PHE CG C Y N 353 PHE CD1 C Y N 354 PHE CD2 C Y N 355 PHE CE1 C Y N 356 PHE CE2 C Y N 357 PHE CZ C Y N 358 PHE OXT O N N 359 PHE H H N N 360 PHE H2 H N N 361 PHE HA H N N 362 PHE HB2 H N N 363 PHE HB3 H N N 364 PHE HD1 H N N 365 PHE HD2 H N N 366 PHE HE1 H N N 367 PHE HE2 H N N 368 PHE HZ H N N 369 PHE HXT H N N 370 PRO N N N N 371 PRO CA C N S 372 PRO C C N N 373 PRO O O N N 374 PRO CB C N N 375 PRO CG C N N 376 PRO CD C N N 377 PRO OXT O N N 378 PRO H H N N 379 PRO HA H N N 380 PRO HB2 H N N 381 PRO HB3 H N N 382 PRO HG2 H N N 383 PRO HG3 H N N 384 PRO HD2 H N N 385 PRO HD3 H N N 386 PRO HXT H N N 387 SER N N N N 388 SER CA C N S 389 SER C C N N 390 SER O O N N 391 SER CB C N N 392 SER OG O N N 393 SER OXT O N N 394 SER H H N N 395 SER H2 H N N 396 SER HA H N N 397 SER HB2 H N N 398 SER HB3 H N N 399 SER HG H N N 400 SER HXT H N N 401 SO4 S S N N 402 SO4 O1 O N N 403 SO4 O2 O N N 404 SO4 O3 O N N 405 SO4 O4 O N N 406 THR N N N N 407 THR CA C N S 408 THR C C N N 409 THR O O N N 410 THR CB C N R 411 THR OG1 O N N 412 THR CG2 C N N 413 THR OXT O N N 414 THR H H N N 415 THR H2 H N N 416 THR HA H N N 417 THR HB H N N 418 THR HG1 H N N 419 THR HG21 H N N 420 THR HG22 H N N 421 THR HG23 H N N 422 THR HXT H N N 423 TRP N N N N 424 TRP CA C N S 425 TRP C C N N 426 TRP O O N N 427 TRP CB C N N 428 TRP CG C Y N 429 TRP CD1 C Y N 430 TRP CD2 C Y N 431 TRP NE1 N Y N 432 TRP CE2 C Y N 433 TRP CE3 C Y N 434 TRP CZ2 C Y N 435 TRP CZ3 C Y N 436 TRP CH2 C Y N 437 TRP OXT O N N 438 TRP H H N N 439 TRP H2 H N N 440 TRP HA H N N 441 TRP HB2 H N N 442 TRP HB3 H N N 443 TRP HD1 H N N 444 TRP HE1 H N N 445 TRP HE3 H N N 446 TRP HZ2 H N N 447 TRP HZ3 H N N 448 TRP HH2 H N N 449 TRP HXT H N N 450 TYR N N N N 451 TYR CA C N S 452 TYR C C N N 453 TYR O O N N 454 TYR CB C N N 455 TYR CG C Y N 456 TYR CD1 C Y N 457 TYR CD2 C Y N 458 TYR CE1 C Y N 459 TYR CE2 C Y N 460 TYR CZ C Y N 461 TYR OH O N N 462 TYR OXT O N N 463 TYR H H N N 464 TYR H2 H N N 465 TYR HA H N N 466 TYR HB2 H N N 467 TYR HB3 H N N 468 TYR HD1 H N N 469 TYR HD2 H N N 470 TYR HE1 H N N 471 TYR HE2 H N N 472 TYR HH H N N 473 TYR HXT H N N 474 VAL N N N N 475 VAL CA C N S 476 VAL C C N N 477 VAL O O N N 478 VAL CB C N N 479 VAL CG1 C N N 480 VAL CG2 C N N 481 VAL OXT O N N 482 VAL H H N N 483 VAL H2 H N N 484 VAL HA H N N 485 VAL HB H N N 486 VAL HG11 H N N 487 VAL HG12 H N N 488 VAL HG13 H N N 489 VAL HG21 H N N 490 VAL HG22 H N N 491 VAL HG23 H N N 492 VAL HXT H N N 493 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 CMO C O trip N N 76 CYS N CA sing N N 77 CYS N H sing N N 78 CYS N H2 sing N N 79 CYS CA C sing N N 80 CYS CA CB sing N N 81 CYS CA HA sing N N 82 CYS C O doub N N 83 CYS C OXT sing N N 84 CYS CB SG sing N N 85 CYS CB HB2 sing N N 86 CYS CB HB3 sing N N 87 CYS SG HG sing N N 88 CYS OXT HXT sing N N 89 GLN N CA sing N N 90 GLN N H sing N N 91 GLN N H2 sing N N 92 GLN CA C sing N N 93 GLN CA CB sing N N 94 GLN CA HA sing N N 95 GLN C O doub N N 96 GLN C OXT sing N N 97 GLN CB CG sing N N 98 GLN CB HB2 sing N N 99 GLN CB HB3 sing N N 100 GLN CG CD sing N N 101 GLN CG HG2 sing N N 102 GLN CG HG3 sing N N 103 GLN CD OE1 doub N N 104 GLN CD NE2 sing N N 105 GLN NE2 HE21 sing N N 106 GLN NE2 HE22 sing N N 107 GLN OXT HXT sing N N 108 GLU N CA sing N N 109 GLU N H sing N N 110 GLU N H2 sing N N 111 GLU CA C sing N N 112 GLU CA CB sing N N 113 GLU CA HA sing N N 114 GLU C O doub N N 115 GLU C OXT sing N N 116 GLU CB CG sing N N 117 GLU CB HB2 sing N N 118 GLU CB HB3 sing N N 119 GLU CG CD sing N N 120 GLU CG HG2 sing N N 121 GLU CG HG3 sing N N 122 GLU CD OE1 doub N N 123 GLU CD OE2 sing N N 124 GLU OE2 HE2 sing N N 125 GLU OXT HXT sing N N 126 GLY N CA sing N N 127 GLY N H sing N N 128 GLY N H2 sing N N 129 GLY CA C sing N N 130 GLY CA HA2 sing N N 131 GLY CA HA3 sing N N 132 GLY C O doub N N 133 GLY C OXT sing N N 134 GLY OXT HXT sing N N 135 GOL C1 O1 sing N N 136 GOL C1 C2 sing N N 137 GOL C1 H11 sing N N 138 GOL C1 H12 sing N N 139 GOL O1 HO1 sing N N 140 GOL C2 O2 sing N N 141 GOL C2 C3 sing N N 142 GOL C2 H2 sing N N 143 GOL O2 HO2 sing N N 144 GOL C3 O3 sing N N 145 GOL C3 H31 sing N N 146 GOL C3 H32 sing N N 147 GOL O3 HO3 sing N N 148 HEM CHA C1A sing N N 149 HEM CHA C4D doub N N 150 HEM CHA HHA sing N N 151 HEM CHB C4A sing N N 152 HEM CHB C1B doub N N 153 HEM CHB HHB sing N N 154 HEM CHC C4B sing N N 155 HEM CHC C1C doub N N 156 HEM CHC HHC sing N N 157 HEM CHD C4C doub N N 158 HEM CHD C1D sing N N 159 HEM CHD HHD sing N N 160 HEM C1A C2A doub Y N 161 HEM C1A NA sing Y N 162 HEM C2A C3A sing Y N 163 HEM C2A CAA sing N N 164 HEM C3A C4A doub Y N 165 HEM C3A CMA sing N N 166 HEM C4A NA sing Y N 167 HEM CMA HMA sing N N 168 HEM CMA HMAA sing N N 169 HEM CMA HMAB sing N N 170 HEM CAA CBA sing N N 171 HEM CAA HAA sing N N 172 HEM CAA HAAA sing N N 173 HEM CBA CGA sing N N 174 HEM CBA HBA sing N N 175 HEM CBA HBAA sing N N 176 HEM CGA O1A doub N N 177 HEM CGA O2A sing N N 178 HEM C1B C2B sing N N 179 HEM C1B NB sing N N 180 HEM C2B C3B doub N N 181 HEM C2B CMB sing N N 182 HEM C3B C4B sing N N 183 HEM C3B CAB sing N N 184 HEM C4B NB doub N N 185 HEM CMB HMB sing N N 186 HEM CMB HMBA sing N N 187 HEM CMB HMBB sing N N 188 HEM CAB CBB doub N N 189 HEM CAB HAB sing N N 190 HEM CBB HBB sing N N 191 HEM CBB HBBA sing N N 192 HEM C1C C2C sing Y N 193 HEM C1C NC sing Y N 194 HEM C2C C3C doub Y N 195 HEM C2C CMC sing N N 196 HEM C3C C4C sing Y N 197 HEM C3C CAC sing N N 198 HEM C4C NC sing Y N 199 HEM CMC HMC sing N N 200 HEM CMC HMCA sing N N 201 HEM CMC HMCB sing N N 202 HEM CAC CBC doub N N 203 HEM CAC HAC sing N N 204 HEM CBC HBC sing N N 205 HEM CBC HBCA sing N N 206 HEM C1D C2D sing N N 207 HEM C1D ND doub N N 208 HEM C2D C3D doub N N 209 HEM C2D CMD sing N N 210 HEM C3D C4D sing N N 211 HEM C3D CAD sing N N 212 HEM C4D ND sing N N 213 HEM CMD HMD sing N N 214 HEM CMD HMDA sing N N 215 HEM CMD HMDB sing N N 216 HEM CAD CBD sing N N 217 HEM CAD HAD sing N N 218 HEM CAD HADA sing N N 219 HEM CBD CGD sing N N 220 HEM CBD HBD sing N N 221 HEM CBD HBDA sing N N 222 HEM CGD O1D doub N N 223 HEM CGD O2D sing N N 224 HEM O2A H2A sing N N 225 HEM O2D H2D sing N N 226 HEM FE NA sing N N 227 HEM FE NB sing N N 228 HEM FE NC sing N N 229 HEM FE ND sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 HOH O H1 sing N N 252 HOH O H2 sing N N 253 ILE N CA sing N N 254 ILE N H sing N N 255 ILE N H2 sing N N 256 ILE CA C sing N N 257 ILE CA CB sing N N 258 ILE CA HA sing N N 259 ILE C O doub N N 260 ILE C OXT sing N N 261 ILE CB CG1 sing N N 262 ILE CB CG2 sing N N 263 ILE CB HB sing N N 264 ILE CG1 CD1 sing N N 265 ILE CG1 HG12 sing N N 266 ILE CG1 HG13 sing N N 267 ILE CG2 HG21 sing N N 268 ILE CG2 HG22 sing N N 269 ILE CG2 HG23 sing N N 270 ILE CD1 HD11 sing N N 271 ILE CD1 HD12 sing N N 272 ILE CD1 HD13 sing N N 273 ILE OXT HXT sing N N 274 LEU N CA sing N N 275 LEU N H sing N N 276 LEU N H2 sing N N 277 LEU CA C sing N N 278 LEU CA CB sing N N 279 LEU CA HA sing N N 280 LEU C O doub N N 281 LEU C OXT sing N N 282 LEU CB CG sing N N 283 LEU CB HB2 sing N N 284 LEU CB HB3 sing N N 285 LEU CG CD1 sing N N 286 LEU CG CD2 sing N N 287 LEU CG HG sing N N 288 LEU CD1 HD11 sing N N 289 LEU CD1 HD12 sing N N 290 LEU CD1 HD13 sing N N 291 LEU CD2 HD21 sing N N 292 LEU CD2 HD22 sing N N 293 LEU CD2 HD23 sing N N 294 LEU OXT HXT sing N N 295 LYS N CA sing N N 296 LYS N H sing N N 297 LYS N H2 sing N N 298 LYS CA C sing N N 299 LYS CA CB sing N N 300 LYS CA HA sing N N 301 LYS C O doub N N 302 LYS C OXT sing N N 303 LYS CB CG sing N N 304 LYS CB HB2 sing N N 305 LYS CB HB3 sing N N 306 LYS CG CD sing N N 307 LYS CG HG2 sing N N 308 LYS CG HG3 sing N N 309 LYS CD CE sing N N 310 LYS CD HD2 sing N N 311 LYS CD HD3 sing N N 312 LYS CE NZ sing N N 313 LYS CE HE2 sing N N 314 LYS CE HE3 sing N N 315 LYS NZ HZ1 sing N N 316 LYS NZ HZ2 sing N N 317 LYS NZ HZ3 sing N N 318 LYS OXT HXT sing N N 319 MET N CA sing N N 320 MET N H sing N N 321 MET N H2 sing N N 322 MET CA C sing N N 323 MET CA CB sing N N 324 MET CA HA sing N N 325 MET C O doub N N 326 MET C OXT sing N N 327 MET CB CG sing N N 328 MET CB HB2 sing N N 329 MET CB HB3 sing N N 330 MET CG SD sing N N 331 MET CG HG2 sing N N 332 MET CG HG3 sing N N 333 MET SD CE sing N N 334 MET CE HE1 sing N N 335 MET CE HE2 sing N N 336 MET CE HE3 sing N N 337 MET OXT HXT sing N N 338 PHE N CA sing N N 339 PHE N H sing N N 340 PHE N H2 sing N N 341 PHE CA C sing N N 342 PHE CA CB sing N N 343 PHE CA HA sing N N 344 PHE C O doub N N 345 PHE C OXT sing N N 346 PHE CB CG sing N N 347 PHE CB HB2 sing N N 348 PHE CB HB3 sing N N 349 PHE CG CD1 doub Y N 350 PHE CG CD2 sing Y N 351 PHE CD1 CE1 sing Y N 352 PHE CD1 HD1 sing N N 353 PHE CD2 CE2 doub Y N 354 PHE CD2 HD2 sing N N 355 PHE CE1 CZ doub Y N 356 PHE CE1 HE1 sing N N 357 PHE CE2 CZ sing Y N 358 PHE CE2 HE2 sing N N 359 PHE CZ HZ sing N N 360 PHE OXT HXT sing N N 361 PRO N CA sing N N 362 PRO N CD sing N N 363 PRO N H sing N N 364 PRO CA C sing N N 365 PRO CA CB sing N N 366 PRO CA HA sing N N 367 PRO C O doub N N 368 PRO C OXT sing N N 369 PRO CB CG sing N N 370 PRO CB HB2 sing N N 371 PRO CB HB3 sing N N 372 PRO CG CD sing N N 373 PRO CG HG2 sing N N 374 PRO CG HG3 sing N N 375 PRO CD HD2 sing N N 376 PRO CD HD3 sing N N 377 PRO OXT HXT sing N N 378 SER N CA sing N N 379 SER N H sing N N 380 SER N H2 sing N N 381 SER CA C sing N N 382 SER CA CB sing N N 383 SER CA HA sing N N 384 SER C O doub N N 385 SER C OXT sing N N 386 SER CB OG sing N N 387 SER CB HB2 sing N N 388 SER CB HB3 sing N N 389 SER OG HG sing N N 390 SER OXT HXT sing N N 391 SO4 S O1 doub N N 392 SO4 S O2 doub N N 393 SO4 S O3 sing N N 394 SO4 S O4 sing N N 395 THR N CA sing N N 396 THR N H sing N N 397 THR N H2 sing N N 398 THR CA C sing N N 399 THR CA CB sing N N 400 THR CA HA sing N N 401 THR C O doub N N 402 THR C OXT sing N N 403 THR CB OG1 sing N N 404 THR CB CG2 sing N N 405 THR CB HB sing N N 406 THR OG1 HG1 sing N N 407 THR CG2 HG21 sing N N 408 THR CG2 HG22 sing N N 409 THR CG2 HG23 sing N N 410 THR OXT HXT sing N N 411 TRP N CA sing N N 412 TRP N H sing N N 413 TRP N H2 sing N N 414 TRP CA C sing N N 415 TRP CA CB sing N N 416 TRP CA HA sing N N 417 TRP C O doub N N 418 TRP C OXT sing N N 419 TRP CB CG sing N N 420 TRP CB HB2 sing N N 421 TRP CB HB3 sing N N 422 TRP CG CD1 doub Y N 423 TRP CG CD2 sing Y N 424 TRP CD1 NE1 sing Y N 425 TRP CD1 HD1 sing N N 426 TRP CD2 CE2 doub Y N 427 TRP CD2 CE3 sing Y N 428 TRP NE1 CE2 sing Y N 429 TRP NE1 HE1 sing N N 430 TRP CE2 CZ2 sing Y N 431 TRP CE3 CZ3 doub Y N 432 TRP CE3 HE3 sing N N 433 TRP CZ2 CH2 doub Y N 434 TRP CZ2 HZ2 sing N N 435 TRP CZ3 CH2 sing Y N 436 TRP CZ3 HZ3 sing N N 437 TRP CH2 HH2 sing N N 438 TRP OXT HXT sing N N 439 TYR N CA sing N N 440 TYR N H sing N N 441 TYR N H2 sing N N 442 TYR CA C sing N N 443 TYR CA CB sing N N 444 TYR CA HA sing N N 445 TYR C O doub N N 446 TYR C OXT sing N N 447 TYR CB CG sing N N 448 TYR CB HB2 sing N N 449 TYR CB HB3 sing N N 450 TYR CG CD1 doub Y N 451 TYR CG CD2 sing Y N 452 TYR CD1 CE1 sing Y N 453 TYR CD1 HD1 sing N N 454 TYR CD2 CE2 doub Y N 455 TYR CD2 HD2 sing N N 456 TYR CE1 CZ doub Y N 457 TYR CE1 HE1 sing N N 458 TYR CE2 CZ sing Y N 459 TYR CE2 HE2 sing N N 460 TYR CZ OH sing N N 461 TYR OH HH sing N N 462 TYR OXT HXT sing N N 463 VAL N CA sing N N 464 VAL N H sing N N 465 VAL N H2 sing N N 466 VAL CA C sing N N 467 VAL CA CB sing N N 468 VAL CA HA sing N N 469 VAL C O doub N N 470 VAL C OXT sing N N 471 VAL CB CG1 sing N N 472 VAL CB CG2 sing N N 473 VAL CB HB sing N N 474 VAL CG1 HG11 sing N N 475 VAL CG1 HG12 sing N N 476 VAL CG1 HG13 sing N N 477 VAL CG2 HG21 sing N N 478 VAL CG2 HG22 sing N N 479 VAL CG2 HG23 sing N N 480 VAL OXT HXT sing N N 481 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'CARBON MONOXIDE' CMO 4 GLYCEROL GOL 5 'SULFATE ION' SO4 6 'ACETATE ION' ACT 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1KR7 _pdbx_initial_refinement_model.details 'PDB ENTRY 1KR7' #