HEADER UNKNOWN FUNCTION 29-MAY-12 4AVR TITLE CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN PA4485 FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA4485; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-125; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PA01; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEHISTEV KEYWDS UNKNOWN FUNCTION, GRAM-NEGATIVE BACTERIA, INFECTIOUS DISEASE, KEYWDS 2 STRUCTURE-BASED INHIBITOR DESIGN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.MCMAHON,L.MOYNIE,H.LIU,F.DUTHIE,M.S.ALPHEY,J.H.NAISMITH REVDAT 2 23-JAN-13 4AVR 1 JRNL REVDAT 1 09-JAN-13 4AVR 0 JRNL AUTH L.MOYNIE,R.SCHNELL,S.A.MCMAHON,T.SANDALOVA,W.A.BOULKEROU, JRNL AUTH 2 J.W.SCHMIDBERGER,M.S.ALPHEY,C.CUKIER,F.DUTHIE,J.KOPEC,H.LIU, JRNL AUTH 3 A.JACEWICZ,W.N.HUNTER,J.H.NAISMITH,G.SCHNEIDER JRNL TITL THE AEROPATH PROJECT TARGETING PSEUDOMONAS AERUGINOSA: JRNL TITL 2 CRYSTALLOGRAPHIC STUDIES FOR ASSESSMENT OF POTENTIAL JRNL TITL 3 TARGETS IN EARLY-STAGE DRUG DISCOVERY. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 25 2013 JRNL REFN ISSN 1744-3091 JRNL PMID 23295481 JRNL DOI 10.1107/S1744309112044739 REMARK 2 REMARK 2 RESOLUTION. 1.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 91.98 REMARK 3 NUMBER OF REFLECTIONS : 65937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.15015 REMARK 3 R VALUE (WORKING SET) : 0.14873 REMARK 3 FREE R VALUE : 0.17747 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.079 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.107 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4649 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.155 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.186 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.625 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10 REMARK 3 B22 (A**2) : -0.09 REMARK 3 B33 (A**2) : -0.21 REMARK 3 B12 (A**2) : -0.27 REMARK 3 B13 (A**2) : 0.26 REMARK 3 B23 (A**2) : -0.22 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.032 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.661 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1476 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1090 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1986 ; 1.531 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2573 ; 1.357 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 188 ; 6.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;22.952 ;19.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;11.986 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.127 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1689 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 360 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2566 ;10.058 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 62 ;22.173 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2687 ; 9.609 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 94 B 1 94 3098 0.21 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6760 -13.8180 6.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: 0.0149 REMARK 3 T33: 0.0098 T12: 0.0117 REMARK 3 T13: -0.0053 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.1497 L22: 0.1154 REMARK 3 L33: 1.1735 L12: 0.0879 REMARK 3 L13: -0.2963 L23: -0.3673 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: 0.0128 S13: 0.0005 REMARK 3 S21: 0.0068 S22: 0.0063 S23: 0.0023 REMARK 3 S31: -0.0177 S32: -0.0182 S33: -0.0081 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6940 -16.0760 23.1360 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.0150 REMARK 3 T33: 0.0190 T12: 0.0118 REMARK 3 T13: -0.0102 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.1636 L22: 4.3856 REMARK 3 L33: 0.3739 L12: -0.1767 REMARK 3 L13: 0.2235 L23: 0.2950 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: 0.0091 S13: 0.0141 REMARK 3 S21: 0.1444 S22: -0.0015 S23: -0.1927 REMARK 3 S31: 0.0223 S32: 0.0118 S33: -0.0025 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1320 -5.7350 16.6110 REMARK 3 T TENSOR REMARK 3 T11: 0.0117 T22: 0.0187 REMARK 3 T33: 0.0168 T12: 0.0105 REMARK 3 T13: -0.0024 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.0287 L22: 0.1399 REMARK 3 L33: 0.2342 L12: 0.0236 REMARK 3 L13: -0.0214 L23: 0.1370 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: 0.0011 S13: 0.0080 REMARK 3 S21: -0.0032 S22: 0.0052 S23: -0.0062 REMARK 3 S31: -0.0121 S32: 0.0064 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1470 -4.4670 3.7290 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.0199 REMARK 3 T33: 0.0140 T12: 0.0172 REMARK 3 T13: -0.0053 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.0878 L22: 1.4667 REMARK 3 L33: 1.7796 L12: 0.2953 REMARK 3 L13: 0.0272 L23: 0.9895 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0009 S13: 0.0169 REMARK 3 S21: -0.0382 S22: -0.0288 S23: 0.0623 REMARK 3 S31: -0.1058 S32: -0.0822 S33: 0.0282 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9660 -10.1670 6.2200 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0187 REMARK 3 T33: 0.0141 T12: 0.0113 REMARK 3 T13: -0.0021 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1508 L22: 0.2037 REMARK 3 L33: 0.3446 L12: -0.0935 REMARK 3 L13: -0.0795 L23: 0.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 0.0076 S13: 0.0006 REMARK 3 S21: -0.0138 S22: -0.0097 S23: 0.0115 REMARK 3 S31: 0.0023 S32: -0.0386 S33: 0.0067 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3630 -16.2290 7.7680 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.0256 REMARK 3 T33: 0.0264 T12: 0.0124 REMARK 3 T13: -0.0031 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 4.3203 L22: 1.0463 REMARK 3 L33: 6.0795 L12: -0.3422 REMARK 3 L13: 2.3393 L23: -2.3994 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: 0.1048 S13: -0.0618 REMARK 3 S21: -0.0209 S22: -0.0823 S23: -0.0801 REMARK 3 S31: 0.0193 S32: 0.2094 S33: 0.1497 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6990 -15.0000 10.3970 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0205 REMARK 3 T33: 0.0111 T12: 0.0098 REMARK 3 T13: -0.0047 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.2098 L22: 0.0303 REMARK 3 L33: 0.3808 L12: 0.0587 REMARK 3 L13: -0.1434 L23: 0.0223 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0061 S13: -0.0050 REMARK 3 S21: 0.0018 S22: -0.0062 S23: -0.0002 REMARK 3 S31: 0.0129 S32: -0.0414 S33: 0.0087 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7210 -13.5570 2.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0170 REMARK 3 T33: 0.0091 T12: 0.0100 REMARK 3 T13: -0.0063 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.0649 L22: 0.1795 REMARK 3 L33: 0.7492 L12: -0.0175 REMARK 3 L13: -0.1795 L23: -0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: 0.0119 S13: 0.0023 REMARK 3 S21: 0.0125 S22: 0.0093 S23: -0.0072 REMARK 3 S31: 0.0069 S32: -0.0460 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 6 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9550 -30.4150 33.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.0147 T22: 0.0223 REMARK 3 T33: 0.0160 T12: 0.0137 REMARK 3 T13: -0.0032 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.1168 L22: 0.7339 REMARK 3 L33: 1.5380 L12: -0.2696 REMARK 3 L13: -0.0600 L23: 0.0120 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.0059 S13: -0.0108 REMARK 3 S21: 0.0360 S22: 0.0085 S23: 0.0177 REMARK 3 S31: 0.0881 S32: 0.0853 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8840 -24.8920 15.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.0109 T22: 0.0172 REMARK 3 T33: 0.0177 T12: 0.0127 REMARK 3 T13: -0.0038 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0946 L22: 0.2002 REMARK 3 L33: 0.0868 L12: 0.0022 REMARK 3 L13: 0.0089 L23: -0.1283 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0043 S13: 0.0015 REMARK 3 S21: -0.0125 S22: -0.0103 S23: -0.0307 REMARK 3 S31: 0.0107 S32: 0.0088 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 43 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3350 -34.7630 27.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: 0.0196 REMARK 3 T33: 0.0158 T12: 0.0102 REMARK 3 T13: -0.0062 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.4059 L22: 0.2412 REMARK 3 L33: 0.0081 L12: -0.1910 REMARK 3 L13: 0.0498 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: -0.0191 S13: -0.0238 REMARK 3 S21: 0.0230 S22: 0.0028 S23: -0.0187 REMARK 3 S31: 0.0025 S32: -0.0039 S33: -0.0057 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9200 -32.1430 24.3740 REMARK 3 T TENSOR REMARK 3 T11: 0.0113 T22: 0.0189 REMARK 3 T33: 0.0155 T12: 0.0083 REMARK 3 T13: -0.0022 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.1613 L22: 0.0738 REMARK 3 L33: 0.1814 L12: -0.0736 REMARK 3 L13: -0.1342 L23: 0.0908 REMARK 3 S TENSOR REMARK 3 S11: -0.0144 S12: 0.0242 S13: -0.0154 REMARK 3 S21: 0.0098 S22: -0.0008 S23: -0.0030 REMARK 3 S31: 0.0149 S32: -0.0175 S33: 0.0152 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5320 -19.5760 30.5120 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1167 REMARK 3 T33: 0.1597 T12: 0.0825 REMARK 3 T13: -0.0903 T23: -0.0920 REMARK 3 L TENSOR REMARK 3 L11: 0.5857 L22: 25.0369 REMARK 3 L33: 9.6696 L12: 3.8293 REMARK 3 L13: 2.3796 L23: 15.5592 REMARK 3 S TENSOR REMARK 3 S11: 0.0408 S12: 0.1420 S13: -0.2375 REMARK 3 S21: 0.2587 S22: 0.9167 S23: -1.5402 REMARK 3 S31: 0.1568 S32: 0.5656 S33: -0.9574 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4750 -29.2050 22.9860 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: 0.0169 REMARK 3 T33: 0.0116 T12: 0.0107 REMARK 3 T13: -0.0045 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0948 L22: 0.0897 REMARK 3 L33: 0.1099 L12: 0.0470 REMARK 3 L13: -0.1018 L23: -0.0472 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: 0.0045 S13: -0.0042 REMARK 3 S21: -0.0090 S22: 0.0056 S23: -0.0027 REMARK 3 S31: 0.0121 S32: -0.0052 S33: 0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 4AVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-12. REMARK 100 THE PDBE ID CODE IS EBI-52617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (Q315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65937 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.08 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 4.1 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.6 REMARK 200 R MERGE FOR SHELL (I) : 0.17 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M NACL AND REMARK 280 0.1M BIS-TRIS PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 95 CA C O CB CG OD1 OD2 REMARK 470 ARG B 65 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP B 95 CA C O CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 7 OD1 ASP B 70 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 73 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG B 64 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 29 71.33 -104.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 60 GLY A 61 -147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1 - 30 OMITTED FROM FINAL CONSTRUCT AS REMARK 999 PROPOSED TO BE SIGNAL PEPTIDE DBREF 4AVR A 2 95 UNP Q9HVT6 Q9HVT6_PSEAE 32 125 DBREF 4AVR B 2 95 UNP Q9HVT6 Q9HVT6_PSEAE 32 125 SEQADV 4AVR MET A 1 UNP Q9HVT6 EXPRESSION TAG SEQADV 4AVR MET B 1 UNP Q9HVT6 EXPRESSION TAG SEQRES 1 A 95 MET ASP THR GLY GLU ALA SER TYR TYR GLY SER ARG HIS SEQRES 2 A 95 ALA GLY LEU ARG THR ALA SER GLY GLU ARG TYR ASN PRO SEQRES 3 A 95 ASN ALA MET THR ALA ALA HIS ARG THR LEU PRO PHE GLY SEQRES 4 A 95 ALA ARG VAL ARG VAL THR ASN LEU ASP ASN ARG ARG SER SEQRES 5 A 95 VAL VAL VAL ARG ILE ASN ASP ARG GLY PRO PHE ARG ARG SEQRES 6 A 95 GLY ARG ILE ILE ASP VAL SER ARG LYS ALA ALA GLU GLY SEQRES 7 A 95 LEU GLY MET ILE ARG SER GLY VAL ALA PRO VAL ARG ILE SEQRES 8 A 95 GLU SER LEU ASP SEQRES 1 B 95 MET ASP THR GLY GLU ALA SER TYR TYR GLY SER ARG HIS SEQRES 2 B 95 ALA GLY LEU ARG THR ALA SER GLY GLU ARG TYR ASN PRO SEQRES 3 B 95 ASN ALA MET THR ALA ALA HIS ARG THR LEU PRO PHE GLY SEQRES 4 B 95 ALA ARG VAL ARG VAL THR ASN LEU ASP ASN ARG ARG SER SEQRES 5 B 95 VAL VAL VAL ARG ILE ASN ASP ARG GLY PRO PHE ARG ARG SEQRES 6 B 95 GLY ARG ILE ILE ASP VAL SER ARG LYS ALA ALA GLU GLY SEQRES 7 B 95 LEU GLY MET ILE ARG SER GLY VAL ALA PRO VAL ARG ILE SEQRES 8 B 95 GLU SER LEU ASP FORMUL 3 HOH *204(H2 O) HELIX 1 1 GLY A 10 ALA A 14 5 5 HELIX 2 2 SER A 72 GLY A 80 1 9 HELIX 3 3 SER B 72 GLY B 80 1 9 SHEET 1 AA 7 ASP A 2 TYR A 8 0 SHEET 2 AA 7 ALA A 87 SER A 93 -1 O ALA A 87 N ALA A 6 SHEET 3 AA 7 ARG A 41 ASN A 46 -1 O ARG A 43 N GLU A 92 SHEET 4 AA 7 SER A 52 ASP A 59 -1 O VAL A 53 N VAL A 44 SHEET 5 AA 7 THR A 30 ALA A 32 1 O ALA A 31 N ASN A 58 SHEET 6 AA 7 ARG A 67 VAL A 71 -1 O ASP A 70 N ALA A 32 SHEET 7 AA 7 ASP A 2 TYR A 8 1 O GLU A 5 N ILE A 68 SHEET 1 BA 7 ASP B 2 TYR B 8 0 SHEET 2 BA 7 ALA B 87 SER B 93 -1 O ALA B 87 N ALA B 6 SHEET 3 BA 7 ARG B 41 ASN B 46 -1 O ARG B 43 N GLU B 92 SHEET 4 BA 7 SER B 52 ASP B 59 -1 O VAL B 53 N VAL B 44 SHEET 5 BA 7 THR B 30 ALA B 32 1 O ALA B 31 N ASN B 58 SHEET 6 BA 7 ILE B 69 VAL B 71 -1 O ASP B 70 N ALA B 32 SHEET 7 BA 7 ASP B 2 TYR B 8 1 O SER B 7 N VAL B 71 CISPEP 1 GLY A 61 PRO A 62 0 3.05 CISPEP 2 GLY B 61 PRO B 62 0 -1.53 CRYST1 33.978 39.020 41.870 102.80 103.48 115.54 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029431 0.014063 0.013133 0.00000 SCALE2 0.000000 0.028403 0.011207 0.00000 SCALE3 0.000000 0.000000 0.026403 0.00000