HEADER VIRAL PROTEIN 30-MAY-12 4AVZ TITLE TAILSPIKE PROTEIN MUTANT E372Q OF E. COLI BACTERIOPHAGE HK620 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAIL SPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 111-710; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-11D KEYWDS VIRAL PROTEIN, ENDO-N-ACETYLGLUCOSAMINIDASE, O-ANTIGEN EXPDTA X-RAY DIFFRACTION AUTHOR U.GOHLKE,N.K.BROEKER,J.J.MUELLER,C.UETRECHT,U.HEINEMANN,R.SECKLER, AUTHOR 2 S.BARBIRZ REVDAT 3 20-DEC-23 4AVZ 1 REMARK SHEET REVDAT 2 16-JAN-13 4AVZ 1 JRNL REVDAT 1 26-SEP-12 4AVZ 0 JRNL AUTH N.K.BROEKER,U.GOHLKE,J.J.MULLER,C.UETRECHT,U.HEINEMANN, JRNL AUTH 2 R.SECKLER,S.BARBIRZ JRNL TITL SINGLE AMINO ACID EXCHANGE IN BACTERIOPHAGE HK620 TAILSPIKE JRNL TITL 2 PROTEIN RESULTS IN THOUSAND-FOLD INCREASE OF ITS JRNL TITL 3 OLIGOSACCHARIDE AFFINITY. JRNL REF GLYCOBIOLOGY V. 23 59 2013 JRNL REFN ISSN 0959-6658 JRNL PMID 22923442 JRNL DOI 10.1093/GLYCOB/CWS126 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.BARBIRZ,J.J.MULLER,C.UETRECHT,A.J.CLARK,U.HEINEMANN, REMARK 1 AUTH 2 R.SECKLER REMARK 1 TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHAGE HK620 TAILSPIKE: REMARK 1 TITL 2 PODOVIRAL TAILSPIKE ENDOGLYCOSIDASE MODULES ARE REMARK 1 TITL 3 EVOLUTIONARILY RELATED. REMARK 1 REF MOL.MICROBIOL. V. 69 303 2008 REMARK 1 REFN ISSN 0950-382X REMARK 1 PMID 18547389 REMARK 1 DOI 10.1111/J.1365-2958.2008.06311.X REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4539 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.92300 REMARK 3 B22 (A**2) : 0.92300 REMARK 3 B33 (A**2) : -1.38500 REMARK 3 B12 (A**2) : 0.46200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4739 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3006 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6474 ; 1.800 ; 1.914 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7305 ; 1.006 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 617 ; 7.579 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 230 ;36.444 ;24.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;11.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.614 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5567 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1036 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1226 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 75 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2361 ; 0.186 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4739 ; 0.879 ; 0.922 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3006 ; 0.193 ; 0.935 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6474 ; 1.341 ; 1.370 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1542 ; 2.344 ; 2.762 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3964 ; 3.697 ; 4.921 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6152 45.1647 -10.6296 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.1148 REMARK 3 T33: 0.0254 T12: 0.0062 REMARK 3 T13: 0.0135 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.8462 L22: 4.3407 REMARK 3 L33: 1.5270 L12: 0.4340 REMARK 3 L13: 0.4809 L23: 1.2631 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.2224 S13: -0.1188 REMARK 3 S21: -0.4180 S22: -0.0273 S23: 0.0369 REMARK 3 S31: -0.0620 S32: 0.0993 S33: 0.0877 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 467 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4958 24.2079 26.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.0529 REMARK 3 T33: 0.0596 T12: 0.0259 REMARK 3 T13: 0.0535 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.1987 L22: 0.0740 REMARK 3 L33: 1.0657 L12: 0.0036 REMARK 3 L13: -0.0312 L23: -0.0505 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.0525 S13: -0.0569 REMARK 3 S21: -0.0613 S22: -0.0494 S23: -0.0260 REMARK 3 S31: 0.2193 S32: 0.0495 S33: 0.1144 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 468 A 532 REMARK 3 ORIGIN FOR THE GROUP (A): 0.6158 23.7529 54.6445 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0552 REMARK 3 T33: 0.0854 T12: 0.0050 REMARK 3 T13: 0.0185 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.9172 L22: 0.4723 REMARK 3 L33: 0.8288 L12: 0.1576 REMARK 3 L13: 0.0647 L23: -0.0104 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.0117 S13: -0.2136 REMARK 3 S21: -0.0134 S22: -0.0280 S23: -0.0350 REMARK 3 S31: 0.1735 S32: 0.0283 S33: 0.0456 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 533 A 709 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9279 29.6233 79.7635 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0478 REMARK 3 T33: 0.0808 T12: 0.0003 REMARK 3 T13: 0.0069 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.0281 L22: 0.0538 REMARK 3 L33: 0.3764 L12: 0.0260 REMARK 3 L13: -0.0135 L23: 0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0253 S13: -0.0084 REMARK 3 S21: 0.0227 S22: -0.0189 S23: 0.0069 REMARK 3 S31: 0.0729 S32: -0.0120 S33: 0.0243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1290052706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50917 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VJI REMARK 200 REMARK 200 REMARK: R MEAS HAS BEEN REPORTED AS R MERGE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLISED FROM 3.5 M REMARK 280 SODIUMFORMATE, 0.1 M TRIS-HCL, PH 8.5. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -37.13550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 64.32057 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 37.13550 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 64.32057 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2025 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 373 TO GLN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 110 REMARK 465 PRO A 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 303 O HOH A 2104 1.65 REMARK 500 O HOH A 2225 O HOH A 2226 2.05 REMARK 500 ND2 ASN A 517 O HOH A 2210 2.06 REMARK 500 CD ARG A 381 OE2 GLU A 414 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2317 O HOH A 2327 3565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 156 CG HIS A 156 CD2 0.068 REMARK 500 SER A 664 CB SER A 664 OG -0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 229 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 381 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 381 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU A 636 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 707 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 113 78.63 -117.91 REMARK 500 ASN A 303 69.28 64.36 REMARK 500 ASN A 303 61.34 63.31 REMARK 500 ASN A 330 63.97 61.26 REMARK 500 ASP A 441 64.36 69.95 REMARK 500 MET A 523 -66.10 -90.64 REMARK 500 THR A 530 -117.51 -111.75 REMARK 500 THR A 613 -72.86 -107.11 REMARK 500 ASN A 653 43.24 -106.67 REMARK 500 THR A 678 -164.21 -115.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 112 GLN A 113 143.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 144 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VJI RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 REMARK 900 RELATED ID: 2VJJ RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 HEXASACCHARIDE REMARK 900 RELATED ID: 2X6W RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT E372Q OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2X6X RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT D339N OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2X6Y RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN MUTANT D339A OF E.COLI BACTERIOPHAGE HK620 IN REMARK 900 COMPLEX WITH HEXASACCHARIDE REMARK 900 RELATED ID: 2X85 RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E. COLI BACTERIOPHAGE HK620 IN COMPLEX WITH REMARK 900 HEXASACCHARIDE DBREF 4AVZ A 110 709 UNP Q9AYY6 Q9AYY6_BPHK6 111 710 SEQADV 4AVZ GLN A 372 UNP Q9AYY6 GLU 373 ENGINEERED MUTATION SEQRES 1 A 600 ASP PRO ASP GLN PHE ARG ALA ILE ILE GLU SER PRO GLU SEQRES 2 A 600 GLY ALA GLY HIS VAL GLY TYR GLN TYR ARG ARG ASN THR SEQRES 3 A 600 GLY SER THR MET ARG MET VAL SER ASP VAL LEU ASP GLU SEQRES 4 A 600 ARG VAL SER LEU TRP ASP PHE HIS CYS ASP PRO SER GLY SEQRES 5 A 600 ASN VAL ILE GLN PRO GLY PRO ASN VAL ASP SER ARG GLN SEQRES 6 A 600 TYR LEU GLN ALA ALA ILE ASP TYR VAL SER SER ASN GLY SEQRES 7 A 600 GLY GLY THR ILE THR ILE PRO ALA GLY TYR THR TRP TYR SEQRES 8 A 600 LEU GLY SER TYR GLY VAL GLY GLY ILE ALA GLY HIS SER SEQRES 9 A 600 GLY ILE ILE GLN LEU ARG SER ASN VAL ASN LEU ASN ILE SEQRES 10 A 600 GLU GLY ARG ILE HIS LEU SER PRO PHE PHE ASP LEU LYS SEQRES 11 A 600 PRO PHE GLN VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO SEQRES 12 A 600 ALA SER SER GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY SEQRES 13 A 600 HIS GLY VAL VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SEQRES 14 A 600 SER SER GLN LEU ARG ASN GLY VAL ALA PHE GLY ARG SER SEQRES 15 A 600 TYR ASN CYS SER VAL THR GLY ILE THR PHE GLN ASN GLY SEQRES 16 A 600 ASP VAL THR TRP ALA ILE THR LEU GLY TRP ASN GLY TYR SEQRES 17 A 600 GLY SER ASN CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN SEQRES 18 A 600 LEU VAL ASN SER SER VAL ASN ALA ASP HIS SER THR VAL SEQRES 19 A 600 TYR VAL ASN CYS PRO TYR SER GLY VAL GLU SER CYS TYR SEQRES 20 A 600 PHE SER MET SER SER SER PHE ALA ARG ASN ILE ALA CYS SEQRES 21 A 600 SER VAL GLN LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SEQRES 22 A 600 SER THR VAL ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL SEQRES 23 A 600 MET HIS ALA ALA GLU ALA ALA GLY ALA GLY SER TYR ALA SEQRES 24 A 600 TYR ASN MET GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR SEQRES 25 A 600 GLY GLN PHE VAL ILE LEU GLY SER ASP VAL THR ALA THR SEQRES 26 A 600 VAL SER GLY HIS LEU ASN ASP VAL ILE VAL SER GLY ASN SEQRES 27 A 600 ILE VAL SER ILE GLY GLU ARG ALA ALA PHE SER ALA PRO SEQRES 28 A 600 PHE GLY ALA PHE ILE ASP ILE GLY PRO ASP ASN SER GLY SEQRES 29 A 600 ALA SER ASN VAL GLN ASP ILE GLN ARG VAL LEU VAL THR SEQRES 30 A 600 GLY ASN SER PHE TYR ALA PRO ALA ASN ILE THR ASP SER SEQRES 31 A 600 ALA ALA ILE THR LEU ARG ALA ASN LEU ASN GLY CYS THR SEQRES 32 A 600 PHE ILE ALA ASN ASN PHE ASP CYS ARG TYR MET VAL TYR SEQRES 33 A 600 ASN ALA PRO GLY THR THR SER PRO VAL VAL GLN ASN LEU SEQRES 34 A 600 VAL TRP ASP LYS SER ASN VAL ILE GLY GLY THR HIS ALA SEQRES 35 A 600 ASN GLN ARG ALA GLY GLN ASN LEU PHE ASP MET GLN PHE SEQRES 36 A 600 ALA SER VAL VAL ASN SER THR ILE GLU VAL GLN LEU SER SEQRES 37 A 600 CYS GLU ASP LEU SER MET PHE SER CYS ILE LEU PHE PRO SEQRES 38 A 600 ALA SER CYS GLN LEU SER TYR SER LYS ILE THR VAL ASP SEQRES 39 A 600 SER ALA TRP THR LYS SER MET SER ASN THR ALA VAL PHE SEQRES 40 A 600 GLU GLY ASN GLN GLN ALA GLY ALA ASN VAL TYR VAL SER SEQRES 41 A 600 TYR PRO ALA THR VAL ASN LEU THR SER TYR ASN THR GLN SEQRES 42 A 600 GLY ALA VAL PRO PHE PHE SER THR ASP THR ASN TYR ALA SEQRES 43 A 600 TRP VAL THR SER ALA TYR SER LEU SER ILE ASN GLU ASN SEQRES 44 A 600 LEU ASP PHE SER PRO PRO ALA THR TYR THR ASN LYS ALA SEQRES 45 A 600 ASN GLY GLN LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY SEQRES 46 A 600 GLY VAL ARG SER VAL SER VAL ARG LEU MET LEU GLN ARG SEQRES 47 A 600 GLN VAL HET 144 A1001 8 HETNAM 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM FORMUL 2 144 C4 H12 N O3 1+ FORMUL 3 HOH *337(H2 O) HELIX 1 1 GLN A 113 SER A 120 1 8 HELIX 2 2 GLU A 122 HIS A 126 5 5 HELIX 3 3 GLN A 130 ASN A 134 5 5 HELIX 4 4 VAL A 142 ASP A 147 1 6 HELIX 5 5 LEU A 152 PHE A 155 5 4 HELIX 6 6 SER A 172 ASN A 186 1 15 HELIX 7 7 ILE A 209 HIS A 212 5 4 HELIX 8 8 PRO A 234 ASP A 237 5 4 HELIX 9 9 ASP A 251 SER A 255 5 5 HELIX 10 10 PHE A 363 ILE A 367 1 5 HELIX 11 11 HIS A 397 ALA A 401 5 5 HELIX 12 12 ASN A 619 GLY A 623 5 5 SHEET 1 AA 2 GLY A 128 TYR A 129 0 SHEET 2 AA 2 ARG A 140 MET A 141 -1 O ARG A 140 N TYR A 129 SHEET 1 AB 5 GLY A 189 ILE A 193 0 SHEET 2 AB 5 VAL A 222 ILE A 226 1 O ASN A 223 N ILE A 191 SHEET 3 AB 5 LEU A 258 TYR A 264 1 O HIS A 262 N LEU A 224 SHEET 4 AB 5 SER A 291 THR A 297 1 O TYR A 292 N ASN A 260 SHEET 5 AB 5 GLY A 318 SER A 319 -1 O SER A 319 N ASN A 293 SHEET 1 AC 2 GLY A 189 ILE A 193 0 SHEET 2 AC 2 SER A 291 THR A 297 1 O TYR A 292 N ASN A 260 SHEET 1 AD12 THR A 198 LEU A 201 0 SHEET 2 AD12 ARG A 229 LEU A 232 1 O ARG A 229 N TRP A 199 SHEET 3 AD12 VAL A 268 ASP A 270 1 O VAL A 268 N ILE A 230 SHEET 4 AD12 THR A 300 GLN A 302 1 O THR A 300 N VAL A 269 SHEET 5 AD12 ARG A 327 ILE A 329 1 O ARG A 327 N PHE A 301 SHEET 6 AD12 TYR A 356 SER A 358 1 O TYR A 356 N PHE A 328 SHEET 7 AD12 THR A 384 TYR A 388 1 O THR A 384 N PHE A 357 SHEET 8 AD12 ILE A 417 ILE A 420 1 O ILE A 417 N VAL A 385 SHEET 9 AD12 ILE A 448 ILE A 451 1 O ILE A 448 N ALA A 418 SHEET 10 AD12 SER A 489 TYR A 491 1 O SER A 489 N VAL A 449 SHEET 11 AD12 ASN A 517 ASP A 519 1 O ASN A 517 N PHE A 490 SHEET 12 AD12 VAL A 545 ILE A 546 1 O VAL A 545 N PHE A 518 SHEET 1 AE11 GLY A 214 GLN A 217 0 SHEET 2 AE11 PHE A 241 VAL A 245 1 O GLN A 242 N ILE A 215 SHEET 3 AE11 ARG A 283 ALA A 287 1 O ASN A 284 N VAL A 243 SHEET 4 AE11 ILE A 310 LEU A 312 1 N THR A 311 O VAL A 286 SHEET 5 AE11 HIS A 340 VAL A 345 1 O TYR A 344 N LEU A 312 SHEET 6 AE11 ALA A 368 LEU A 373 1 O CYS A 369 N THR A 342 SHEET 7 AE11 ARG A 390 MET A 396 1 O ARG A 390 N SER A 370 SHEET 8 AE11 GLN A 423 SER A 429 1 O GLN A 423 N GLY A 391 SHEET 9 AE11 GLY A 462 ILE A 467 1 O ALA A 463 N PHE A 424 SHEET 10 AE11 SER A 499 LEU A 504 1 O ALA A 500 N PHE A 464 SHEET 11 AE11 TYR A 522 TYR A 525 1 O TYR A 522 N ALA A 501 SHEET 1 AF 3 VAL A 534 GLN A 536 0 SHEET 2 AF 3 SER A 566 VAL A 568 1 O SER A 566 N VAL A 535 SHEET 3 AF 3 GLN A 594 SER A 596 1 O GLN A 594 N VAL A 567 SHEET 1 AG 3 ASN A 558 ASP A 561 0 SHEET 2 AG 3 SER A 585 PHE A 589 1 O SER A 585 N LEU A 559 SHEET 3 AG 3 ALA A 614 PHE A 616 1 O VAL A 615 N PHE A 589 SITE 1 AC1 9 VAL A 568 ASN A 569 TYR A 597 ASP A 670 SITE 2 AC1 9 ILE A 693 ARG A 697 HOH A2252 HOH A2277 SITE 3 AC1 9 HOH A2337 CRYST1 74.271 74.271 174.665 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013464 0.007774 0.000000 0.00000 SCALE2 0.000000 0.015547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005725 0.00000