HEADER HYDROLASE 01-JUN-12 4AW7 TITLE BPGH86A: A BETA-PORPHYRANASE OF GLYCOSIDE HYDROLASE FAMILY 86 FROM THE TITLE 2 HUMAN GUT BACTERIUM BACTEROIDES PLEBEIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GH86A BETA-PORPHYRANASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 30-598; COMPND 5 EC: 3.2.1.178; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES PLEBEIUS; SOURCE 3 ORGANISM_TAXID: 310297; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS KEYWDS HYDROLASE, GH86, PORPHYRAN-HEXA-OLIGOSACCHARIDE, COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HEHEMANN,A.G.KELLY,N.A.PUDLO,E.C.MARTENS,A.B.BORASTON REVDAT 7 29-JUL-20 4AW7 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 16-JAN-19 4AW7 1 JRNL REVDAT 5 26-DEC-12 4AW7 1 JRNL REVDAT 4 21-NOV-12 4AW7 1 JRNL REVDAT 3 14-NOV-12 4AW7 1 REMARK SEQADV REVDAT 2 31-OCT-12 4AW7 1 HETATM ANISOU REVDAT 1 25-JUL-12 4AW7 0 JRNL AUTH J.H.HEHEMANN,A.G.KELLY,N.A.PUDLO,E.C.MARTENS,A.B.BORASTON JRNL TITL BACTERIA OF THE HUMAN GUT MICROBIOME CATABOLIZE RED SEAWEED JRNL TITL 2 GLYCANS WITH CARBOHYDRATE-ACTIVE ENZYME UPDATES FROM JRNL TITL 3 EXTRINSIC MICROBES. JRNL REF PROC. NATL. ACAD. SCI. V. 109 19786 2012 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 23150581 JRNL DOI 10.1073/PNAS.1211002109 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 154892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10851 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 580 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 594 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.041 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.998 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4780 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3190 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6511 ; 1.632 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7734 ; 0.972 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 594 ; 6.310 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;37.769 ;24.542 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 750 ;11.044 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.774 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 698 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5370 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1003 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2860 ; 1.644 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1162 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4628 ; 2.531 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1920 ; 3.439 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1867 ; 4.767 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7970 ; 1.421 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163194 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 31.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG MME 2000, 0.1 M POTASSIUM REMARK 280 THIOCYANATE AND 150 MM SODIUM IODIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.66500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.22500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.22500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.66500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 PRO A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 VAL A 242 REMARK 465 THR A 243 REMARK 465 GLY A 244 REMARK 465 THR A 245 REMARK 465 ASP A 246 REMARK 465 SER A 286 REMARK 465 SER A 472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 27 CG SD CE REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 GLU A 453 CG CD OE1 OE2 REMARK 470 SER A 598 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2486 O HOH A 2525 1.02 REMARK 500 O HOH A 2026 O HOH A 2039 1.72 REMARK 500 O HOH A 2362 O HOH A 2364 1.78 REMARK 500 O HOH A 2497 O HOH A 2585 1.88 REMARK 500 OG SER A 507 O HOH A 2500 1.94 REMARK 500 O HOH A 2420 O HOH A 2421 1.99 REMARK 500 CE LYS A 373 O HOH A 2093 1.99 REMARK 500 OE1 GLU A 279 O1 GLA B 1 2.03 REMARK 500 I IOD A 1704 O HOH A 2057 2.05 REMARK 500 O HOH A 2102 O HOH A 2149 2.06 REMARK 500 OD1 ASP A 293 OG SER A 296 2.07 REMARK 500 OD1 ASN A 351 O HOH A 2367 2.12 REMARK 500 O HOH A 2058 O HOH A 2149 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 170 O HOH A 2418 4565 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 515 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 571 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -113.09 46.24 REMARK 500 TYR A 49 -52.99 -133.49 REMARK 500 SER A 56 42.49 -82.89 REMARK 500 GLU A 152 60.43 34.18 REMARK 500 ARG A 217 -88.83 -113.55 REMARK 500 SER A 326 -106.54 -105.72 REMARK 500 ASP A 327 -139.81 -156.12 REMARK 500 ASN A 374 -6.04 70.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2089 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1617 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 109 OH REMARK 620 2 LEU A 142 O 138.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1616 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 199 OH REMARK 620 2 TYR A 203 O 121.3 REMARK 620 3 TYR A 213 OH 108.9 64.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1599 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 388 OD2 REMARK 620 2 ASP A 388 OD1 50.7 REMARK 620 3 ASN A 542 OD1 78.8 113.7 REMARK 620 4 TRP A 543 O 103.3 76.4 77.6 REMARK 620 5 GLY A 545 O 132.7 88.7 147.6 86.0 REMARK 620 6 HOH A2396 O 77.7 80.9 132.2 148.5 72.0 REMARK 620 7 HOH A2397 O 90.6 136.4 68.9 140.3 111.5 70.4 REMARK 620 8 HOH A2543 O 151.4 152.6 74.4 80.3 75.5 114.0 70.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CLONED CONSTRUCT CONTAINS N-TERMINAL HIS-TAG DBREF 4AW7 A 30 598 UNP B5CY96 B5CY96_9BACE 30 598 SEQADV 4AW7 MET A 7 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 GLY A 8 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 SER A 9 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 SER A 10 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 11 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 12 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 13 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 14 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 15 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 16 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 SER A 17 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 SER A 18 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 GLY A 19 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 LEU A 20 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 VAL A 21 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 PRO A 22 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 ARG A 23 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 GLY A 24 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 SER A 25 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 HIS A 26 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 MET A 27 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 ALA A 28 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 SER A 29 UNP B5CY96 EXPRESSION TAG SEQADV 4AW7 A UNP B5CY96 ASN 241 DELETION SEQRES 1 A 591 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 591 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL ASP TYR SEQRES 3 A 591 ASN THR ARG ARG PHE LEU SER GLY VAL SER GLU LEU ASP SEQRES 4 A 591 ARG SER LYS TYR PHE ASN ILE HIS SER THR SER ASP ASP SEQRES 5 A 591 ASP LYS ASP VAL GLY LYS PHE LEU ALA ASP TYR GLN VAL SEQRES 6 A 591 GLY LEU GLY ARG LYS PHE TRP GLY PRO TYR SER TYR ALA SEQRES 7 A 591 TYR ASN LYS THR HIS GLU VAL GLY LYS TYR PRO GLN MET SEQRES 8 A 591 LYS PRO TYR SER GLY ASN ILE SER VAL LYS ARG TYR ILE SEQRES 9 A 591 ALA THR GLU HIS PRO TYR VAL GLN HIS ILE GLN GLY GLY SEQRES 10 A 591 ILE ASP VAL GLN ALA ALA GLY ALA TRP SER ALA GLU TYR SEQRES 11 A 591 TYR SER ASN SER GLU LEU VAL PRO GLU PHE PHE GLU PRO SEQRES 12 A 591 LEU ASN GLU PRO PHE VAL HIS ALA ASN ASP ALA GLY PHE SEQRES 13 A 591 THR VAL GLN GLY GLN ALA MET ARG GLU LEU MET VAL ASP SEQRES 14 A 591 PHE TYR ALA SER ILE GLY LYS HIS ILE HIS ASN ASN PRO SEQRES 15 A 591 ARG LEU ASN GLY LYS MET LYS VAL ILE GLY TYR ALA ALA SEQRES 16 A 591 ALA TYR PRO ALA TRP GLU ASP GLY ASN PHE ASN TYR TRP SEQRES 17 A 591 ASN THR ARG MET LYS MET PHE ILE ASP ARG ALA GLY ALA SEQRES 18 A 591 TYR MET ASP GLY PHE SER VAL HIS LEU TYR ASP GLY ILE SEQRES 19 A 591 VAL THR GLY THR ASP THR LYS ARG SER GLY SER ASN SER SEQRES 20 A 591 GLU ALA VAL LEU ASP MET VAL GLU ALA TYR SER TYR ILE SEQRES 21 A 591 LYS PHE GLY HIS VAL LYS PRO LEU ALA ILE SER GLU PHE SEQRES 22 A 591 GLY GLY ILE ASP ASN SER LYS PRO ASP ASP SER TYR ASP SEQRES 23 A 591 ASP ILE SER SER VAL ARG SER VAL SER SER PHE ASN HIS SEQRES 24 A 591 PHE LEU PHE ASN LEU MET GLU ARG GLN ASP ASN LEU PHE SEQRES 25 A 591 ILE SER ILE PRO PHE VAL SER ASP LYS ALA GLU TRP HIS SEQRES 26 A 591 ILE THR ALA ALA ASN ASN TYR THR SER TYR SER ALA ALA SEQRES 27 A 591 LEU PHE ILE PRO ASP ASN PRO GLN ASN LEU LYS ASN THR SEQRES 28 A 591 THR TRP ARG LEU ASN ASP LYS LYS TYR PHE PHE GLU LEU SEQRES 29 A 591 TRP LYS ASN VAL LYS GLY GLU ARG VAL ASP ILE THR SER SEQRES 30 A 591 SER ASN PRO ASP ILE GLN VAL GLN ALA PHE LYS ASP GLY SEQRES 31 A 591 GLY ARG LEU TYR ILE ALA LEU ASP ASN LEU ASP ASP ASN SEQRES 32 A 591 PRO GLN THR VAL TYR LEU ASN ASN LYS ASN SER TRP LYS SEQRES 33 A 591 ASP VAL SER ASN VAL THR LYS ARG SER LEU TYR VAL ASN SEQRES 34 A 591 TYR ASN ALA GLY ILE GLU TYR THR GLU GLN ASN VAL PRO SEQRES 35 A 591 SER MET PRO GLU SER ILE SER ILE VAL PRO ASN GLN THR SEQRES 36 A 591 ILE VAL LEU VAL ALA ASP VAL SER SER SER ALA PHE THR SEQRES 37 A 591 ASN SER ILE ILE ARG ASN LYS TYR TYR SER SER GLU TYR SEQRES 38 A 591 LEU LYS PRO ILE SER ALA GLY SER SER LEU SER PHE PRO SEQRES 39 A 591 PHE THR GLY ILE GLU SER GLY SER GLY ARG ALA SER LEU SEQRES 40 A 591 ARG MET SER ILE GLY ARG PRO VAL SER ALA SER LYS LYS SEQRES 41 A 591 PRO VAL VAL LYS ILE ASN GLY THR ALA VAL SER VAL PRO SEQRES 42 A 591 ASP ASN TRP LYS GLY TYR GLY GLN SER ASN ARG ASN ILE SEQRES 43 A 591 PHE PHE GLY MET ILE GLU VAL PRO PHE ASP ILE GLN LEU SEQRES 44 A 591 LEU LYS ASN GLY ASP ASN ASN VAL ASP ILE THR PHE SER SEQRES 45 A 591 ASP GLY GLY GLY HIS VAL SER SER MET ILE LEU GLN VAL SEQRES 46 A 591 GLU LYS TYR THR VAL SER HET GLA B 1 12 HET L6S B 2 15 HET GAL B 3 11 HET AAL B 4 10 HET GAL B 5 11 HET L6S B 6 15 HET CA A1599 1 HET GAL A1609 12 HET CL A1615 1 HET K A1616 1 HET K A1617 1 HET EDO A1618 4 HET IOD A1700 1 HET IOD A1701 1 HET IOD A1702 1 HET IOD A1703 1 HET IOD A1704 1 HET IOD A1705 1 HET IOD A1706 1 HET IOD A1707 1 HET IOD A1708 1 HET IOD A1719 1 HET IOD A1720 1 HET IOD A1721 1 HET IOD A1722 1 HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM L6S 6-O-SULFO-ALPHA-L-GALACTOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM AAL 3,6-ANHYDRO-ALPHA-L-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GLA C6 H12 O6 FORMUL 2 L6S 2(C6 H12 O9 S) FORMUL 2 GAL 3(C6 H12 O6) FORMUL 2 AAL C6 H10 O5 FORMUL 3 CA CA 2+ FORMUL 5 CL CL 1- FORMUL 6 K 2(K 1+) FORMUL 8 EDO C2 H6 O2 FORMUL 9 IOD 13(I 1-) FORMUL 22 HOH *594(H2 O) HELIX 1 1 ASP A 45 TYR A 49 5 5 HELIX 2 2 ASP A 59 GLN A 70 1 12 HELIX 3 3 GLY A 79 HIS A 89 1 11 HELIX 4 4 ASP A 125 ASN A 139 1 15 HELIX 5 5 PRO A 153 ALA A 157 5 5 HELIX 6 6 GLN A 165 ASN A 186 1 22 HELIX 7 7 PHE A 211 ARG A 217 1 7 HELIX 8 8 ARG A 217 GLY A 226 1 10 HELIX 9 9 ALA A 227 MET A 229 5 3 HELIX 10 10 GLY A 251 GLY A 270 1 20 HELIX 11 11 ARG A 299 GLU A 313 1 15 HELIX 12 12 ARG A 314 ASP A 316 5 3 HELIX 13 13 ALA A 329 ILE A 333 5 5 HELIX 14 14 THR A 334 ASN A 338 5 5 HELIX 15 15 LYS A 365 LYS A 373 1 9 HELIX 16 16 ASP A 563 LEU A 567 5 5 SHEET 1 AA11 GLY A 440 VAL A 448 0 SHEET 2 AA11 VAL A 425 ASN A 436 -1 O VAL A 428 N VAL A 448 SHEET 3 AA11 GLN A 461 VAL A 469 -1 O THR A 462 N LEU A 433 SHEET 4 AA11 ARG A 399 ASN A 406 -1 O LEU A 400 N ALA A 467 SHEET 5 AA11 ILE A 389 ASP A 396 -1 O GLN A 390 N ASP A 405 SHEET 6 AA11 GLU A 378 SER A 384 -1 O GLU A 378 N LYS A 395 SHEET 7 AA11 MET A 27 LEU A 38 -1 O SER A 29 N THR A 383 SHEET 8 AA11 ASN A 476 TYR A 484 1 O ASN A 476 N ARG A 35 SHEET 9 AA11 HIS A 584 THR A 596 -1 O LEU A 590 N TYR A 483 SHEET 10 AA11 GLY A 510 PRO A 521 -1 O ARG A 511 N GLU A 593 SHEET 11 AA11 ILE A 553 PHE A 562 -1 O PHE A 554 N ARG A 520 SHEET 1 AB 9 GLY A 440 VAL A 448 0 SHEET 2 AB 9 VAL A 425 ASN A 436 -1 O VAL A 428 N VAL A 448 SHEET 3 AB 9 GLN A 461 VAL A 469 -1 O THR A 462 N LEU A 433 SHEET 4 AB 9 ARG A 399 ASN A 406 -1 O LEU A 400 N ALA A 467 SHEET 5 AB 9 ILE A 389 ASP A 396 -1 O GLN A 390 N ASP A 405 SHEET 6 AB 9 GLU A 378 SER A 384 -1 O GLU A 378 N LYS A 395 SHEET 7 AB 9 MET A 27 LEU A 38 -1 O SER A 29 N THR A 383 SHEET 8 AB 9 GLN A 412 ASN A 417 1 O TYR A 415 N ALA A 28 SHEET 9 AB 9 SER A 454 ILE A 457 -1 O ILE A 455 N VAL A 414 SHEET 1 AC10 GLY A 440 VAL A 448 0 SHEET 2 AC10 VAL A 425 ASN A 436 -1 O VAL A 428 N VAL A 448 SHEET 3 AC10 GLN A 461 VAL A 469 -1 O THR A 462 N LEU A 433 SHEET 4 AC10 ARG A 399 ASN A 406 -1 O LEU A 400 N ALA A 467 SHEET 5 AC10 ILE A 389 ASP A 396 -1 O GLN A 390 N ASP A 405 SHEET 6 AC10 GLU A 378 SER A 384 -1 O GLU A 378 N LYS A 395 SHEET 7 AC10 MET A 27 LEU A 38 -1 O SER A 29 N THR A 383 SHEET 8 AC10 ASN A 476 TYR A 484 1 O ASN A 476 N ARG A 35 SHEET 9 AC10 HIS A 584 THR A 596 -1 O LEU A 590 N TYR A 483 SHEET 10 AC10 LYS A 490 PRO A 491 1 O LYS A 490 N VAL A 585 SHEET 1 AD 2 ASN A 51 ILE A 52 0 SHEET 2 AD 2 GLY A 72 LEU A 73 1 O GLY A 72 N ILE A 52 SHEET 1 AE 7 ARG A 75 PHE A 77 0 SHEET 2 AE 7 SER A 105 THR A 112 1 O ILE A 110 N LYS A 76 SHEET 3 AE 7 LEU A 142 GLU A 148 1 O VAL A 143 N LYS A 107 SHEET 4 AE 7 LYS A 195 ALA A 201 1 O LYS A 195 N PHE A 147 SHEET 5 AE 7 GLY A 231 ILE A 240 1 O GLY A 231 N GLY A 198 SHEET 6 AE 7 LEU A 275 ASP A 284 1 O ALA A 276 N VAL A 234 SHEET 7 AE 7 LEU A 318 PRO A 323 1 N PHE A 319 O LEU A 275 SHEET 1 AF 2 PHE A 347 PRO A 349 0 SHEET 2 AF 2 TRP A 360 LEU A 362 -1 O ARG A 361 N ILE A 348 SHEET 1 AG 4 LEU A 498 ILE A 505 0 SHEET 2 AG 4 GLY A 570 THR A 577 -1 O GLY A 570 N ILE A 505 SHEET 3 AG 4 VAL A 529 ILE A 532 -1 O VAL A 529 N THR A 577 SHEET 4 AG 4 THR A 535 VAL A 537 -1 O THR A 535 N ILE A 532 LINK O3 BGAL A1609 C1 L6S B 2 1555 1555 1.57 LINK O3 AGLA B 1 C1 L6S B 2 1555 1555 1.57 LINK O4 L6S B 2 C1 GAL B 3 1555 1555 1.42 LINK O3 GAL B 3 C1 AAL B 4 1555 1555 1.42 LINK O4 AAL B 4 C1 GAL B 5 1555 1555 1.42 LINK O3 GAL B 5 C1 L6S B 6 1555 1555 1.43 LINK OH TYR A 109 K K A1617 1555 1555 2.91 LINK O LEU A 142 K K A1617 1555 1555 3.40 LINK OH TYR A 199 K K A1616 1555 1555 2.86 LINK O TYR A 203 K K A1616 1555 1555 3.09 LINK OH TYR A 213 K K A1616 1555 1555 2.90 LINK OD2 ASP A 388 CA CA A1599 1555 1555 2.61 LINK OD1 ASP A 388 CA CA A1599 1555 1555 2.45 LINK OD1 ASN A 542 CA CA A1599 1555 1555 2.41 LINK O TRP A 543 CA CA A1599 1555 1555 2.49 LINK O GLY A 545 CA CA A1599 1555 1555 2.41 LINK CA CA A1599 O HOH A2396 1555 1555 2.45 LINK CA CA A1599 O HOH A2397 1555 1555 2.52 LINK CA CA A1599 O HOH A2543 1555 1555 2.42 CISPEP 1 LEU A 73 GLY A 74 0 -3.32 CISPEP 2 GLY A 198 TYR A 199 0 7.02 CRYST1 71.330 87.700 114.450 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008737 0.00000