HEADER HYDROLASE 01-JUN-12 4AWD TITLE CRYSTAL STRUCTURE OF THE BETA-PORPHYRANASE BPGH16B (BACPLE_01689) FROM TITLE 2 THE HUMAN GUT BACTERIUM BACTEROIDES PLEBEIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PORPHYRANASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.178; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES PLEBEIUS; SOURCE 3 ORGANISM_TAXID: 310297; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.HEHEMANN,A.G.KELLY,N.A.PUDLO,E.C.MARTENS,A.B.BORASTON REVDAT 5 20-DEC-23 4AWD 1 REMARK LINK REVDAT 4 16-JAN-19 4AWD 1 JRNL REVDAT 3 26-DEC-12 4AWD 1 JRNL REVDAT 2 21-NOV-12 4AWD 1 JRNL REVDAT 1 25-JUL-12 4AWD 0 JRNL AUTH J.H.HEHEMANN,A.G.KELLY,N.A.PUDLO,E.C.MARTENS,A.B.BORASTON JRNL TITL BACTERIA OF THE HUMAN GUT MICROBIOME CATABOLIZE RED SEAWEED JRNL TITL 2 GLYCANS WITH CARBOHYDRATE-ACTIVE ENZYME UPDATES FROM JRNL TITL 3 EXTRINSIC MICROBES. JRNL REF PROC. NATL. ACAD. SCI. V. 109 19786 2012 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 23150581 JRNL DOI 10.1073/PNAS.1211002109 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2042 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.41000 REMARK 3 B22 (A**2) : 25.27000 REMARK 3 B33 (A**2) : -18.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4943 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6724 ; 1.294 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.955 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;37.230 ;24.113 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 809 ;17.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.125 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3796 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2942 ; 0.570 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4773 ; 1.091 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2001 ; 1.527 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1951 ; 2.523 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AWD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30374 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3JUU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23-25 % PEG 3350, 100 MM TRIS PH 8.5 REMARK 280 AND 5 MM CALCIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.63000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.63000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 SER A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 LYS A 21 REMARK 465 ASN A 22 REMARK 465 ASP A 23 REMARK 465 GLU A 321 REMARK 465 MET B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 SER B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 PRO B 13 REMARK 465 ARG B 14 REMARK 465 GLY B 15 REMARK 465 SER B 16 REMARK 465 HIS B 17 REMARK 465 MET B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 465 LYS B 21 REMARK 465 ASN B 22 REMARK 465 ASP B 23 REMARK 465 LYS B 24 REMARK 465 LYS B 161 REMARK 465 GLY B 162 REMARK 465 GLY B 163 REMARK 465 LYS B 164 REMARK 465 GLU B 321 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 214 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 MET B 160 CG SD CE REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 GLU B 320 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C2 GOL B 1322 O HOH B 2089 2.09 REMARK 500 CG2 THR A 103 O GLY A 111 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 80 -157.74 -119.50 REMARK 500 THR A 103 152.97 -45.79 REMARK 500 HIS A 129 -141.75 -125.12 REMARK 500 ARG A 184 -50.28 -120.72 REMARK 500 PRO A 191 45.15 -85.67 REMARK 500 ASP A 246 -169.03 -161.45 REMARK 500 THR B 80 -162.95 -115.41 REMARK 500 HIS B 129 -146.79 -127.06 REMARK 500 ARG B 184 -55.35 -125.73 REMARK 500 PRO B 191 43.73 -83.25 REMARK 500 ASP B 246 -166.65 -163.29 REMARK 500 PHE B 273 41.16 -105.25 REMARK 500 VAL B 292 151.99 -39.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 O REMARK 620 2 ASN A 56 OD1 73.1 REMARK 620 3 GLY A 91 O 94.9 94.0 REMARK 620 4 ASP A 309 O 69.6 142.4 85.2 REMARK 620 5 ASP A 309 OD1 138.6 148.3 85.4 69.2 REMARK 620 6 HOH A2038 O 90.8 88.5 174.3 95.9 89.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 54 O REMARK 620 2 ASN B 56 OD1 75.4 REMARK 620 3 GLY B 91 O 90.8 90.1 REMARK 620 4 ASP B 309 O 71.6 144.1 76.8 REMARK 620 5 ASP B 309 OD1 142.0 142.0 84.5 70.6 REMARK 620 6 HOH B2024 O 92.7 95.7 173.9 99.6 89.7 REMARK 620 7 HOH B2027 O 145.8 71.3 96.7 142.6 72.1 83.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1322 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE RECOMBINANT CONSTRUCT CONTAINS N-TERMINAL HIS-TAG DBREF 4AWD A 21 321 UNP B5CY92 B5CY92_9BACE 21 321 DBREF 4AWD B 21 321 UNP B5CY92 B5CY92_9BACE 21 321 SEQADV 4AWD MET A -2 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD GLY A -1 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER A 0 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER A 1 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 2 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 3 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 4 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 5 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 6 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 7 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER A 8 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER A 9 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD GLY A 10 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD LEU A 11 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD VAL A 12 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD PRO A 13 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD ARG A 14 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD GLY A 15 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER A 16 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS A 17 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD MET A 18 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD ALA A 19 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER A 20 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD MET B -2 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD GLY B -1 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER B 0 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER B 1 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 2 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 3 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 4 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 5 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 6 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 7 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER B 8 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER B 9 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD GLY B 10 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD LEU B 11 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD VAL B 12 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD PRO B 13 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD ARG B 14 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD GLY B 15 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER B 16 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD HIS B 17 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD MET B 18 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD ALA B 19 UNP B5CY92 EXPRESSION TAG SEQADV 4AWD SER B 20 UNP B5CY92 EXPRESSION TAG SEQRES 1 A 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 324 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS ASN ASP SEQRES 3 A 324 LYS GLU TYR SER LEU ALA GLU GLU HIS ILE LYS ASN LEU SEQRES 4 A 324 PRO GLU ALA PRO GLU GLY TYR LYS TRP VAL VAL ASN GLU SEQRES 5 A 324 ASP TYR THR ASP GLU PHE ASN GLY LYS ARG LEU ASN ALA SEQRES 6 A 324 ALA LYS TRP HIS ALA LYS SER PRO TYR TRP THR ASN GLY SEQRES 7 A 324 ARG PRO PRO ALA THR PHE LYS ALA GLU ASN VAL SER VAL SEQRES 8 A 324 LYS LYS GLY CYS LEU ARG ILE ILE ASN THR VAL LEU SER SEQRES 9 A 324 PRO THR GLU GLY LEU ASP GLY LYS PRO GLY ASP LYS TYR SEQRES 10 A 324 ARG LEU ALA GLY GLY ALA VAL ALA SER VAL LYS ASN GLN SEQRES 11 A 324 ALA HIS TYR GLY TYR TYR GLU THR ARG MET LYS ALA SER SEQRES 12 A 324 LEU THR THR MET SER SER THR PHE TRP LEU SER ASN ARG SEQRES 13 A 324 PRO VAL MET LYS GLU ILE MET LYS GLY GLY LYS LYS ILE SEQRES 14 A 324 LYS THR TRP SER SER GLN GLU LEU ASP ILE ILE GLU THR SEQRES 15 A 324 MET GLY ILE ILE ARG SER VAL ASN PRO ASP ASN PRO TRP SEQRES 16 A 324 ASN LYS THR TRP ASN MET GLN MET ASN SER ASN THR HIS SEQRES 17 A 324 TYR TRP TYR GLN GLU GLN GLY GLY LYS ARG THR ASP ASN SEQRES 18 A 324 THR ALA LYS ARG SER ASP VAL VAL SER TYR MET THR ASP SEQRES 19 A 324 PRO SER ALA GLU ASP PHE HIS THR TYR GLY CYS TRP TRP SEQRES 20 A 324 VAL ASP ALA ASN THR VAL LYS PHE TYR TYR ASP GLY LYS SEQRES 21 A 324 TYR MET TYR THR ILE LYS PRO THR THR LYS TYR THR ASP SEQRES 22 A 324 THR PRO PHE ASP ARG PRO MET PHE ILE HIS ILE VAL THR SEQRES 23 A 324 GLU THR TYR ASP TRP GLU LYS GLN VAL PRO THR ALA GLU SEQRES 24 A 324 ASP LEU LYS ASP LYS ASP LYS SER THR THR TYR TYR ASP SEQRES 25 A 324 TRP VAL ARG ALA TYR LYS LEU VAL PRO ILE GLU GLU SEQRES 1 B 324 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 324 LEU VAL PRO ARG GLY SER HIS MET ALA SER LYS ASN ASP SEQRES 3 B 324 LYS GLU TYR SER LEU ALA GLU GLU HIS ILE LYS ASN LEU SEQRES 4 B 324 PRO GLU ALA PRO GLU GLY TYR LYS TRP VAL VAL ASN GLU SEQRES 5 B 324 ASP TYR THR ASP GLU PHE ASN GLY LYS ARG LEU ASN ALA SEQRES 6 B 324 ALA LYS TRP HIS ALA LYS SER PRO TYR TRP THR ASN GLY SEQRES 7 B 324 ARG PRO PRO ALA THR PHE LYS ALA GLU ASN VAL SER VAL SEQRES 8 B 324 LYS LYS GLY CYS LEU ARG ILE ILE ASN THR VAL LEU SER SEQRES 9 B 324 PRO THR GLU GLY LEU ASP GLY LYS PRO GLY ASP LYS TYR SEQRES 10 B 324 ARG LEU ALA GLY GLY ALA VAL ALA SER VAL LYS ASN GLN SEQRES 11 B 324 ALA HIS TYR GLY TYR TYR GLU THR ARG MET LYS ALA SER SEQRES 12 B 324 LEU THR THR MET SER SER THR PHE TRP LEU SER ASN ARG SEQRES 13 B 324 PRO VAL MET LYS GLU ILE MET LYS GLY GLY LYS LYS ILE SEQRES 14 B 324 LYS THR TRP SER SER GLN GLU LEU ASP ILE ILE GLU THR SEQRES 15 B 324 MET GLY ILE ILE ARG SER VAL ASN PRO ASP ASN PRO TRP SEQRES 16 B 324 ASN LYS THR TRP ASN MET GLN MET ASN SER ASN THR HIS SEQRES 17 B 324 TYR TRP TYR GLN GLU GLN GLY GLY LYS ARG THR ASP ASN SEQRES 18 B 324 THR ALA LYS ARG SER ASP VAL VAL SER TYR MET THR ASP SEQRES 19 B 324 PRO SER ALA GLU ASP PHE HIS THR TYR GLY CYS TRP TRP SEQRES 20 B 324 VAL ASP ALA ASN THR VAL LYS PHE TYR TYR ASP GLY LYS SEQRES 21 B 324 TYR MET TYR THR ILE LYS PRO THR THR LYS TYR THR ASP SEQRES 22 B 324 THR PRO PHE ASP ARG PRO MET PHE ILE HIS ILE VAL THR SEQRES 23 B 324 GLU THR TYR ASP TRP GLU LYS GLN VAL PRO THR ALA GLU SEQRES 24 B 324 ASP LEU LYS ASP LYS ASP LYS SER THR THR TYR TYR ASP SEQRES 25 B 324 TRP VAL ARG ALA TYR LYS LEU VAL PRO ILE GLU GLU HET CA A1321 1 HET GOL A1322 6 HET CA B1321 1 HET GOL B1322 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *374(H2 O) HELIX 1 1 TYR A 26 HIS A 32 1 7 HELIX 2 2 ILE A 33 LEU A 36 5 4 HELIX 3 3 GLU A 49 THR A 52 5 4 HELIX 4 4 GLY A 105 LYS A 109 5 5 HELIX 5 5 THR A 195 MET A 198 5 4 HELIX 6 6 TYR B 26 HIS B 32 1 7 HELIX 7 7 ILE B 33 LEU B 36 5 4 HELIX 8 8 GLU B 49 THR B 52 5 4 HELIX 9 9 GLY B 105 LYS B 109 5 5 HELIX 10 10 THR B 195 MET B 198 5 4 HELIX 11 11 GLU B 296 ASP B 300 5 5 SHEET 1 AA 2 TYR A 43 VAL A 47 0 SHEET 2 AA 2 THR A 305 PRO A 318 -1 O LYS A 315 N VAL A 46 SHEET 1 AB 8 VAL A 86 LYS A 89 0 SHEET 2 AB 8 CYS A 92 ILE A 96 1 O CYS A 92 N LYS A 89 SHEET 3 AB 8 THR A 305 PRO A 318 1 O THR A 306 N ILE A 95 SHEET 4 AB 8 GLY A 131 LYS A 138 -1 O TYR A 132 N TYR A 314 SHEET 5 AB 8 HIS A 238 ASP A 246 -1 O HIS A 238 N MET A 137 SHEET 6 AB 8 THR A 249 TYR A 254 -1 O THR A 249 N ASP A 246 SHEET 7 AB 8 LYS A 257 ILE A 262 -1 O LYS A 257 N TYR A 254 SHEET 8 AB 8 ARG A 222 SER A 223 -1 O SER A 223 N THR A 261 SHEET 1 AC 4 VAL A 86 LYS A 89 0 SHEET 2 AC 4 CYS A 92 ILE A 96 1 O CYS A 92 N LYS A 89 SHEET 3 AC 4 THR A 305 PRO A 318 1 O THR A 306 N ILE A 95 SHEET 4 AC 4 TYR A 43 VAL A 47 -1 O LYS A 44 N VAL A 317 SHEET 1 AD 7 TRP A 65 HIS A 66 0 SHEET 2 AD 7 ALA A 120 SER A 123 -1 O ALA A 122 N HIS A 66 SHEET 3 AD 7 PHE A 278 VAL A 282 -1 O ILE A 279 N SER A 123 SHEET 4 AD 7 SER A 146 SER A 151 -1 N THR A 147 O VAL A 282 SHEET 5 AD 7 LYS A 165 THR A 179 -1 O LEU A 174 N LEU A 150 SHEET 6 AD 7 ASN A 201 GLU A 210 1 O ASN A 201 N GLU A 178 SHEET 7 AD 7 THR A 216 ASN A 218 1 O THR A 216 N TYR A 208 SHEET 1 AE 6 TRP A 65 HIS A 66 0 SHEET 2 AE 6 ALA A 120 SER A 123 -1 O ALA A 122 N HIS A 66 SHEET 3 AE 6 PHE A 278 VAL A 282 -1 O ILE A 279 N SER A 123 SHEET 4 AE 6 SER A 146 SER A 151 -1 N THR A 147 O VAL A 282 SHEET 5 AE 6 LYS A 165 THR A 179 -1 O LEU A 174 N LEU A 150 SHEET 6 AE 6 VAL A 155 MET A 160 -1 O VAL A 155 N SER A 170 SHEET 1 AF 3 ALA A 79 PHE A 81 0 SHEET 2 AF 3 TYR A 114 GLY A 118 1 O LEU A 116 N THR A 80 SHEET 3 AF 3 THR A 98 GLU A 104 -1 O THR A 98 N ALA A 117 SHEET 1 BA 2 TYR B 43 VAL B 47 0 SHEET 2 BA 2 THR B 305 PRO B 318 -1 O LYS B 315 N VAL B 46 SHEET 1 BB 8 VAL B 86 LYS B 89 0 SHEET 2 BB 8 CYS B 92 ILE B 96 1 O CYS B 92 N LYS B 89 SHEET 3 BB 8 THR B 305 PRO B 318 1 O THR B 306 N ILE B 95 SHEET 4 BB 8 GLY B 131 LYS B 138 -1 O TYR B 132 N TYR B 314 SHEET 5 BB 8 HIS B 238 ASP B 246 -1 O HIS B 238 N MET B 137 SHEET 6 BB 8 THR B 249 TYR B 254 -1 O THR B 249 N VAL B 245 SHEET 7 BB 8 LYS B 257 ILE B 262 -1 O LYS B 257 N TYR B 254 SHEET 8 BB 8 ARG B 222 SER B 223 -1 O SER B 223 N THR B 261 SHEET 1 BC 4 VAL B 86 LYS B 89 0 SHEET 2 BC 4 CYS B 92 ILE B 96 1 O CYS B 92 N LYS B 89 SHEET 3 BC 4 THR B 305 PRO B 318 1 O THR B 306 N ILE B 95 SHEET 4 BC 4 TYR B 43 VAL B 47 -1 O LYS B 44 N VAL B 317 SHEET 1 BD 7 TRP B 65 HIS B 66 0 SHEET 2 BD 7 ALA B 120 SER B 123 -1 O ALA B 122 N HIS B 66 SHEET 3 BD 7 PHE B 278 VAL B 282 -1 O ILE B 279 N SER B 123 SHEET 4 BD 7 SER B 146 SER B 151 -1 N THR B 147 O VAL B 282 SHEET 5 BD 7 LYS B 167 THR B 179 -1 O LEU B 174 N LEU B 150 SHEET 6 BD 7 ASN B 201 GLU B 210 1 O ASN B 201 N GLU B 178 SHEET 7 BD 7 THR B 216 ASN B 218 1 O THR B 216 N TYR B 208 SHEET 1 BE 6 TRP B 65 HIS B 66 0 SHEET 2 BE 6 ALA B 120 SER B 123 -1 O ALA B 122 N HIS B 66 SHEET 3 BE 6 PHE B 278 VAL B 282 -1 O ILE B 279 N SER B 123 SHEET 4 BE 6 SER B 146 SER B 151 -1 N THR B 147 O VAL B 282 SHEET 5 BE 6 LYS B 167 THR B 179 -1 O LEU B 174 N LEU B 150 SHEET 6 BE 6 VAL B 155 GLU B 158 -1 O VAL B 155 N SER B 170 SHEET 1 BF 3 ALA B 79 PHE B 81 0 SHEET 2 BF 3 TYR B 114 GLY B 118 1 O LEU B 116 N THR B 80 SHEET 3 BF 3 THR B 98 GLU B 104 -1 O THR B 98 N ALA B 117 LINK O GLU A 54 CA CA A1321 1555 1555 2.44 LINK OD1 ASN A 56 CA CA A1321 1555 1555 2.40 LINK O GLY A 91 CA CA A1321 1555 1555 2.19 LINK O ASP A 309 CA CA A1321 1555 1555 2.46 LINK OD1 ASP A 309 CA CA A1321 1555 1555 2.39 LINK CA CA A1321 O HOH A2038 1555 1555 2.37 LINK O GLU B 54 CA CA B1321 1555 1555 2.41 LINK OD1 ASN B 56 CA CA B1321 1555 1555 2.55 LINK O GLY B 91 CA CA B1321 1555 1555 2.30 LINK O ASP B 309 CA CA B1321 1555 1555 2.59 LINK OD1 ASP B 309 CA CA B1321 1555 1555 2.56 LINK CA CA B1321 O HOH B2024 1555 1555 2.52 LINK CA CA B1321 O HOH B2027 1555 1555 2.46 CISPEP 1 PRO A 77 PRO A 78 0 10.47 CISPEP 2 SER A 101 PRO A 102 0 -2.27 CISPEP 3 GLY A 162 GLY A 163 0 -10.32 CISPEP 4 PRO B 77 PRO B 78 0 6.75 CISPEP 5 SER B 101 PRO B 102 0 2.42 SITE 1 AC1 5 GLU A 54 ASN A 56 GLY A 91 ASP A 309 SITE 2 AC1 5 HOH A2038 SITE 1 AC2 6 ARG A 76 THR A 147 TRP A 149 GLU A 173 SITE 2 AC2 6 ASP A 175 GLU A 284 SITE 1 AC3 6 GLU B 54 ASN B 56 GLY B 91 ASP B 309 SITE 2 AC3 6 HOH B2024 HOH B2027 SITE 1 AC4 7 TRP B 149 GLU B 173 ASP B 175 GLU B 178 SITE 2 AC4 7 HIS B 205 GLU B 284 HOH B2089 CRYST1 51.120 107.230 137.260 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007285 0.00000