HEADER CELL ADHESION 13-JUN-12 4AXP TITLE NMR STRUCTURE OF HSP12, A PROTEIN INDUCED BY AND REQUIRED FOR DIETARY TITLE 2 RESTRICTION-INDUCED LIFESPAN EXTENSION IN YEAST. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 12 KDA HEAT SHOCK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HSP12, GLUCOSE AND LIPID-REGULATED PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 ATCC: 204508; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PE-SUMO-PRO-KAN KEYWDS CELL ADHESION, AGING, LONGEVITY, PROTEOMICS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.P.HERBERT,M.RIESEN,L.BLOXAM,E.KOSMIDOU,B.M.WAREING,J.R.JOHNSON, AUTHOR 2 M.M.PHELAN,S.R.PENNINGTON,L.Y.LIAN,A.MORGAN REVDAT 3 24-JAN-18 4AXP 1 REMARK REVDAT 2 22-AUG-12 4AXP 1 ATOM REVDAT 1 08-AUG-12 4AXP 0 JRNL AUTH A.P.HERBERT,M.RIESEN,L.BLOXAM,E.KOSMIDOU,B.M.WAREING, JRNL AUTH 2 J.R.JOHNSON,M.M.PHELAN,S.R.PENNINGTON,L.Y.LIAN,A.MORGAN JRNL TITL NMR STRUCTURE OF HSP12, A PROTEIN INDUCED BY AND REQUIRED JRNL TITL 2 FOR DIETARY RESTRICTION-INDUCED LIFESPAN EXTENSION IN YEAST. JRNL REF PLOS ONE V. 7 41975 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22848679 JRNL DOI 10.1371/JOURNAL.PONE.0041975 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUENTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052896. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCACONH; HBHACONH; HCCH_TOCSY; REMARK 210 HNCA; HNCACB; HNCACO; HNCO; N- REMARK 210 HSQC; C-HSQC_FOLD; C-NOESY; C- REMARK 210 TROSY-AROM; HBHANH; HNCBCGCDHD; REMARK 210 N- NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, CCPNMR ANALYSIS 2.1, REMARK 210 TOPSPIN 2.1, DANGLE 1 REMARK 210 METHOD USED : NONE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY ON 13C, 15N-LABELED RECOMBINANT HSP12 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 33 H ALA A 37 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 18 109.24 -39.73 REMARK 500 1 LYS A 23 -74.41 -40.09 REMARK 500 1 SER A 24 -31.19 -37.46 REMARK 500 1 VAL A 40 -7.91 -58.71 REMARK 500 1 SER A 73 -48.28 77.67 REMARK 500 1 ALA A 85 -76.02 -77.26 REMARK 500 1 VAL A 93 -65.56 -103.36 REMARK 500 2 LYS A 18 154.92 -41.89 REMARK 500 2 LYS A 23 -73.78 -101.17 REMARK 500 2 SER A 73 140.37 163.38 REMARK 500 2 ALA A 85 -74.39 -91.34 REMARK 500 3 SER A 2 119.00 -174.30 REMARK 500 3 LYS A 18 107.32 -38.58 REMARK 500 3 PRO A 19 67.48 -69.76 REMARK 500 3 LYS A 23 -74.31 -39.04 REMARK 500 3 SER A 24 -31.38 -37.44 REMARK 500 3 VAL A 44 107.29 -11.97 REMARK 500 3 GLN A 45 108.07 -50.08 REMARK 500 3 SER A 73 -41.04 80.01 REMARK 500 3 ALA A 85 -77.42 -92.52 REMARK 500 3 SER A 87 -70.86 -79.40 REMARK 500 3 PRO A 106 79.59 -69.76 REMARK 500 4 LYS A 18 157.22 -43.69 REMARK 500 4 LYS A 23 -71.42 -69.80 REMARK 500 4 SER A 73 136.64 164.59 REMARK 500 4 ALA A 85 -77.20 -92.68 REMARK 500 4 SER A 87 -70.65 -79.84 REMARK 500 5 LYS A 18 151.09 -38.88 REMARK 500 5 LYS A 23 -71.27 -69.48 REMARK 500 5 VAL A 40 -8.24 -59.40 REMARK 500 5 SER A 73 137.25 164.52 REMARK 500 5 ALA A 85 -78.01 -94.37 REMARK 500 5 SER A 87 -71.48 -80.58 REMARK 500 5 PRO A 106 98.51 -69.74 REMARK 500 6 LYS A 18 108.98 -41.83 REMARK 500 6 ASP A 20 19.83 58.43 REMARK 500 6 LYS A 23 -74.84 -39.03 REMARK 500 6 SER A 24 -31.18 -37.54 REMARK 500 6 VAL A 44 107.30 -12.10 REMARK 500 6 GLN A 45 108.02 -50.03 REMARK 500 6 GLN A 70 178.05 -59.44 REMARK 500 6 SER A 73 140.10 162.58 REMARK 500 6 ALA A 85 -74.81 -67.54 REMARK 500 7 PRO A 19 61.18 -69.85 REMARK 500 7 LYS A 23 -73.07 -41.32 REMARK 500 7 SER A 24 -31.05 -37.07 REMARK 500 7 ASN A 66 -38.22 -39.44 REMARK 500 7 ALA A 78 -34.84 -39.90 REMARK 500 7 ALA A 85 -74.76 -91.82 REMARK 500 7 LYS A 108 -45.27 -131.76 REMARK 500 REMARK 500 THIS ENTRY HAS 160 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18523 RELATED DB: BMRB DBREF 4AXP A 1 109 UNP P22943 HSP12_YEAST 1 109 SEQRES 1 A 109 MET SER ASP ALA GLY ARG LYS GLY PHE GLY GLU LYS ALA SEQRES 2 A 109 SER GLU ALA LEU LYS PRO ASP SER GLN LYS SER TYR ALA SEQRES 3 A 109 GLU GLN GLY LYS GLU TYR ILE THR ASP LYS ALA ASP LYS SEQRES 4 A 109 VAL ALA GLY LYS VAL GLN PRO GLU ASP ASN LYS GLY VAL SEQRES 5 A 109 PHE GLN GLY VAL HIS ASP SER ALA GLU LYS GLY LYS ASP SEQRES 6 A 109 ASN ALA GLU GLY GLN GLY GLU SER LEU ALA ASP GLN ALA SEQRES 7 A 109 ARG ASP TYR MET GLY ALA ALA LYS SER LYS LEU ASN ASP SEQRES 8 A 109 ALA VAL GLU TYR VAL SER GLY ARG VAL HIS GLY GLU GLU SEQRES 9 A 109 ASP PRO THR LYS LYS HELIX 1 1 GLY A 8 LEU A 17 1 10 HELIX 2 2 GLN A 22 VAL A 44 1 23 HELIX 3 3 GLU A 47 GLY A 55 1 9 HELIX 4 4 VAL A 56 LYS A 62 5 7 HELIX 5 5 SER A 73 VAL A 93 1 21 HELIX 6 6 TYR A 95 HIS A 101 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1