HEADER HYDROLASE 13-JUN-12 4AXQ TITLE CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS AT 1.4 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEMETZINCIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 ATCC: 49558; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 10 OTHER_DETAILS: DSM-4304 KEYWDS METALLOPROTEASE, PROTEASE, HYDROLASE, METZINCIN, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR C.GRAEF,M.SCHACHERL,U.BAUMANN REVDAT 3 20-DEC-23 4AXQ 1 REMARK LINK REVDAT 2 12-SEP-12 4AXQ 1 JRNL REVDAT 1 27-JUN-12 4AXQ 0 SPRSDE 27-JUN-12 4AXQ 2XHQ JRNL AUTH C.GRAEF,M.SCHACHERL,S.WALTERSPERGER,U.BAUMANN JRNL TITL CRYSTAL STRUCTURES OF ARCHAEMETZINCIN REVEAL A MOLDABLE JRNL TITL 2 SUBSTRATE-BINDING SITE. JRNL REF PLOS ONE V. 7 43863 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22937112 JRNL DOI 10.1371/JOURNAL.PONE.0043863 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 38201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2021 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.4130 - 3.3719 1.00 2639 154 0.1672 0.1721 REMARK 3 2 3.3719 - 2.6773 1.00 2612 146 0.1710 0.1773 REMARK 3 3 2.6773 - 2.3391 1.00 2606 149 0.1592 0.2015 REMARK 3 4 2.3391 - 2.1254 1.00 2588 143 0.1512 0.1774 REMARK 3 5 2.1254 - 1.9731 1.00 2586 142 0.1468 0.1615 REMARK 3 6 1.9731 - 1.8568 1.00 2597 140 0.1514 0.1811 REMARK 3 7 1.8568 - 1.7638 1.00 2560 148 0.1534 0.1750 REMARK 3 8 1.7638 - 1.6871 1.00 2549 144 0.1557 0.2087 REMARK 3 9 1.6871 - 1.6221 1.00 2601 147 0.1629 0.1936 REMARK 3 10 1.6221 - 1.5662 1.00 2552 143 0.1622 0.2157 REMARK 3 11 1.5662 - 1.5172 1.00 2578 143 0.1718 0.2396 REMARK 3 12 1.5172 - 1.4738 1.00 2582 142 0.1849 0.2319 REMARK 3 13 1.4738 - 1.4351 1.00 2559 140 0.2035 0.2395 REMARK 3 14 1.4351 - 1.4000 1.00 2571 140 0.2353 0.2617 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1350 REMARK 3 ANGLE : 1.230 1835 REMARK 3 CHIRALITY : 0.078 211 REMARK 3 PLANARITY : 0.005 237 REMARK 3 DIHEDRAL : 12.088 517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID -3 - 11) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5020 24.3534 7.0546 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1368 REMARK 3 T33: 0.1104 T12: -0.0044 REMARK 3 T13: -0.0119 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.0738 L22: 0.1974 REMARK 3 L33: 0.1229 L12: -0.1188 REMARK 3 L13: -0.0144 L23: 0.0728 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.0905 S13: 0.0167 REMARK 3 S21: 0.0719 S22: 0.1144 S23: -0.0563 REMARK 3 S31: 0.1031 S32: 0.0296 S33: 0.0067 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 12 - 26) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0628 33.1078 11.2818 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.1526 REMARK 3 T33: 0.1135 T12: -0.0046 REMARK 3 T13: -0.0095 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.0393 L22: 0.0632 REMARK 3 L33: 0.0739 L12: -0.0363 REMARK 3 L13: 0.0199 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: 0.1498 S12: -0.2819 S13: 0.1929 REMARK 3 S21: 0.2259 S22: -0.0067 S23: 0.0524 REMARK 3 S31: 0.0156 S32: 0.0584 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 27 - 42) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0529 26.1020 4.3956 REMARK 3 T TENSOR REMARK 3 T11: 0.0828 T22: 0.1686 REMARK 3 T33: 0.1366 T12: -0.0064 REMARK 3 T13: -0.0088 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.1034 L22: 0.4086 REMARK 3 L33: 0.0748 L12: -0.0984 REMARK 3 L13: 0.0438 L23: 0.0860 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0748 S13: -0.1695 REMARK 3 S21: 0.0562 S22: -0.0318 S23: -0.1916 REMARK 3 S31: 0.0839 S32: 0.1031 S33: 0.0200 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 43 - 58) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4945 31.7970 -11.9276 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1388 REMARK 3 T33: 0.1367 T12: 0.0170 REMARK 3 T13: 0.0455 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1725 L22: 0.0615 REMARK 3 L33: 0.0896 L12: -0.1032 REMARK 3 L13: 0.0153 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0459 S12: 0.0883 S13: 0.0712 REMARK 3 S21: -0.1354 S22: -0.1007 S23: -0.1306 REMARK 3 S31: 0.0866 S32: 0.1247 S33: 0.0071 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 59 - 69) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0655 21.9592 1.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1050 REMARK 3 T33: 0.1217 T12: 0.0101 REMARK 3 T13: 0.0099 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.0157 L22: 0.0218 REMARK 3 L33: 0.0684 L12: 0.0090 REMARK 3 L13: -0.0260 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: 0.0065 S12: -0.1533 S13: -0.0295 REMARK 3 S21: 0.1339 S22: -0.0430 S23: -0.1384 REMARK 3 S31: 0.1483 S32: 0.1301 S33: 0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 70 - 103) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2347 34.1510 -6.4937 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.0870 REMARK 3 T33: 0.0948 T12: -0.0064 REMARK 3 T13: 0.0139 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.4141 L22: 0.2194 REMARK 3 L33: 0.5781 L12: -0.2935 REMARK 3 L13: 0.0422 L23: -0.1445 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.0410 S13: 0.0522 REMARK 3 S21: -0.0366 S22: -0.0703 S23: 0.0098 REMARK 3 S31: 0.0070 S32: -0.0079 S33: -0.0074 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 104 - 122) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0651 36.9167 3.5581 REMARK 3 T TENSOR REMARK 3 T11: 0.1044 T22: 0.0939 REMARK 3 T33: 0.0908 T12: 0.0036 REMARK 3 T13: -0.0099 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.0732 L22: 0.2250 REMARK 3 L33: 0.0920 L12: -0.0612 REMARK 3 L13: 0.0192 L23: -0.1456 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: -0.0561 S13: 0.0270 REMARK 3 S21: -0.0558 S22: 0.0967 S23: -0.0298 REMARK 3 S31: -0.0499 S32: -0.0657 S33: 0.0194 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 121 - 132) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9509 28.9261 -2.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.1097 T22: 0.1322 REMARK 3 T33: 0.1853 T12: -0.0410 REMARK 3 T13: -0.0608 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.0065 L22: 0.1828 REMARK 3 L33: 0.6064 L12: 0.0253 REMARK 3 L13: -0.0429 L23: -0.3315 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: 0.0081 S13: 0.0649 REMARK 3 S21: -0.1926 S22: 0.1484 S23: 0.1563 REMARK 3 S31: 0.0919 S32: -0.1521 S33: -0.0118 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN A AND (RESID 133 - 151) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0372 38.4006 -1.8361 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.1252 REMARK 3 T33: 0.1451 T12: -0.0216 REMARK 3 T13: -0.0369 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.1581 L22: 0.1215 REMARK 3 L33: 0.0384 L12: 0.0315 REMARK 3 L13: 0.0881 L23: 0.0373 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.0572 S13: 0.0853 REMARK 3 S21: -0.2985 S22: 0.1517 S23: 0.2885 REMARK 3 S31: -0.0621 S32: -0.0390 S33: 0.0004 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN A AND (RESID 152 - 160) REMARK 3 ORIGIN FOR THE GROUP (A): -34.0675 24.0782 4.2793 REMARK 3 T TENSOR REMARK 3 T11: 0.0908 T22: 0.1491 REMARK 3 T33: 0.1934 T12: -0.0004 REMARK 3 T13: -0.0086 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 0.0434 L22: 0.0326 REMARK 3 L33: 0.0649 L12: -0.0151 REMARK 3 L13: -0.0006 L23: 0.0430 REMARK 3 S TENSOR REMARK 3 S11: 0.0813 S12: 0.0609 S13: -0.1441 REMARK 3 S21: -0.0045 S22: 0.0990 S23: 0.2330 REMARK 3 S31: 0.0588 S32: -0.0429 S33: 0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PHENIX.REFINE 1.8-1069 USED, WITH NEW REMARK 3 BULK-SOLVENT AND ANISOTROPIC SCALING ALGORITHM GRID STEP FACTOR REMARK 3 IN BULK SOLVENT CORRECTION 4.00. REMARK 4 REMARK 4 4AXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X7M REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2 M (NH4)2SO4, 0.1 M REMARK 280 HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.16950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.16950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.13750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.16950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.16950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.13750 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 44.16950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 44.16950 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.13750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 44.16950 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 44.16950 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.13750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2248 O HOH A 2249 2.01 REMARK 500 O HOH A 2176 O HOH A 2177 2.06 REMARK 500 O HOH A 2032 O HOH A 2033 2.08 REMARK 500 O HOH A 2230 O HOH A 2231 2.16 REMARK 500 O HOH A 2273 O HOH A 2274 2.16 REMARK 500 O HOH A 2269 O HOH A 2274 2.17 REMARK 500 O HOH A 2008 O HOH A 2009 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2075 O HOH A 2278 6454 1.99 REMARK 500 O HOH A 2024 O HOH A 2147 8455 2.07 REMARK 500 O HOH A 2216 O HOH A 2279 3565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2069 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A2070 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A2090 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A2114 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A2121 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A2129 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2283 DISTANCE = 9.71 ANGSTROMS REMARK 525 HOH A2284 DISTANCE = 8.39 ANGSTROMS REMARK 525 HOH A2285 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A2286 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH A2287 DISTANCE = 9.60 ANGSTROMS REMARK 525 HOH A2288 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A2289 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH A2290 DISTANCE = 8.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1162 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -3 O REMARK 620 2 HIS A 117 NE2 170.8 REMARK 620 3 HIS A 121 NE2 97.3 89.6 REMARK 620 4 HIS A 127 NE2 85.2 100.4 94.4 REMARK 620 5 HOH A2015 O 88.1 85.0 174.6 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1161 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 128 SG REMARK 620 2 CYS A 132 SG 113.5 REMARK 620 3 CYS A 151 SG 105.3 111.2 REMARK 620 4 CYS A 154 SG 111.4 105.9 109.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XHQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS REMARK 900 FULGIDUS AT 1.45 A RESOLUTION REMARK 900 RELATED ID: 3ZVS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS REMARK 900 FULGIDUS AT 1.4 A RESOLUTION COMPLEXED WITH MALONATE REMARK 900 RELATED ID: 4A3W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARCHAEMETZINCIN (AMZA) FROM ARCHAEOGLOBUS REMARK 900 FULGIDUS AT 2.16 A RESOLUTION COMPLEXED WITH CITRATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THREE RESIDUES AT THE N-TERMINUS ARE A REMAINDER OF THE REMARK 999 CLEAVED 6XHIS TAG DBREF 4AXQ A 1 160 UNP O29917 AMZA_ARCFU 1 160 SEQADV 4AXQ GLY A -3 UNP O29917 EXPRESSION TAG SEQADV 4AXQ SER A -2 UNP O29917 EXPRESSION TAG SEQADV 4AXQ HIS A -1 UNP O29917 EXPRESSION TAG SEQRES 1 A 163 GLY SER HIS MET LYS ILE TYR ILE GLN PRO LEU SER VAL SEQRES 2 A 163 ASN SER HIS THR VAL GLU VAL LEU ALA ASN SER LEU PRO SEQRES 3 A 163 LYS ILE PHE ASN ALA GLU VAL PHE VAL LEU PRO ALA SER SEQRES 4 A 163 ASP VAL SER LEU LYS CYS TYR ASN ALA SER ARG ARG GLN SEQRES 5 A 163 TYR ASN SER THR CYS ILE LEU ARG MET LEU PRO PRO ILE SEQRES 6 A 163 LYS VAL THR LEU GLY VAL THR GLY LYS ASP ILE TYR ALA SEQRES 7 A 163 LYS GLY MET ASN PHE VAL PHE GLY GLU ALA GLU LEU GLY SEQRES 8 A 163 GLY ALA ARG ALA VAL LEU SER VAL PHE ARG LEU THR THR SEQRES 9 A 163 ALA ASP SER GLU LEU TYR ARG GLU ARG VAL VAL LYS GLU SEQRES 10 A 163 ALA VAL HIS GLU ILE GLY HIS VAL LEU GLY LEU LYS HIS SEQRES 11 A 163 CYS SER ASN ASN CYS VAL MET ARG PHE SER ASN SER VAL SEQRES 12 A 163 GLN ASP VAL ASP ARG LYS PRO VAL SER PHE CYS ARG GLU SEQRES 13 A 163 CYS ALA SER LYS ILE ARG TYR HET ZN A1161 1 HET ZN A1162 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *290(H2 O) HELIX 1 1 ASN A 11 ASN A 27 1 17 HELIX 2 2 SER A 39 LYS A 41 5 3 HELIX 3 3 SER A 52 LEU A 59 1 8 HELIX 4 4 PHE A 97 THR A 100 5 4 HELIX 5 5 ASP A 103 LEU A 123 1 21 HELIX 6 6 SER A 139 LYS A 146 1 8 HELIX 7 7 CYS A 151 TYR A 160 1 10 SHEET 1 AA 5 ALA A 28 VAL A 32 0 SHEET 2 AA 5 MET A 1 LEU A 8 1 O MET A 1 N GLU A 29 SHEET 3 AA 5 THR A 65 THR A 69 1 O LEU A 66 N GLN A 6 SHEET 4 AA 5 ARG A 91 SER A 95 1 O ALA A 92 N GLY A 67 SHEET 5 AA 5 GLY A 83 ALA A 85 -1 O GLU A 84 N VAL A 93 SHEET 1 AB 3 TYR A 43 ASN A 44 0 SHEET 2 AB 3 GLN A 49 ASN A 51 -1 O GLN A 49 N ASN A 44 SHEET 3 AB 3 ILE A 73 TYR A 74 1 N TYR A 74 O TYR A 50 SSBOND 1 CYS A 42 CYS A 54 1555 1555 2.03 LINK O GLY A -3 ZN ZN A1162 6454 1555 2.12 LINK NE2 HIS A 117 ZN ZN A1162 1555 1555 2.10 LINK NE2 HIS A 121 ZN ZN A1162 1555 1555 2.16 LINK NE2 HIS A 127 ZN ZN A1162 1555 1555 2.09 LINK SG CYS A 128 ZN ZN A1161 1555 1555 2.31 LINK SG CYS A 132 ZN ZN A1161 1555 1555 2.31 LINK SG CYS A 151 ZN ZN A1161 1555 1555 2.38 LINK SG CYS A 154 ZN ZN A1161 1555 1555 2.31 LINK ZN ZN A1162 O HOH A2015 1555 6454 2.24 CISPEP 1 LYS A 63 VAL A 64 0 -10.18 SITE 1 AC1 4 CYS A 128 CYS A 132 CYS A 151 CYS A 154 SITE 1 AC2 5 GLY A -3 HIS A 117 HIS A 121 HIS A 127 SITE 2 AC2 5 HOH A2015 CRYST1 88.339 88.339 50.275 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019891 0.00000