data_4AXY # _entry.id 4AXY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4AXY PDBE EBI-52731 WWPDB D_1290052731 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4AXY _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-06-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Widmer, C.' 1 'Gebauer, J.M.' 2 'Brunstein, E.' 3 'Rosenbaum, S.' 4 'Zaucke, F.' 5 'Droegmueller, C.' 6 'Leeb, T.' 7 'Baumann, U.' 8 # _citation.id primary _citation.title 'Molecular Basis for the Action of the Collagen-Specific Chaperone Hsp47/Serpinh1 and its Structure-Specific Client Recognition.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 13243 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22847422 _citation.pdbx_database_id_DOI 10.1073/PNAS.1208072109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Widmer, C.' 1 primary 'Gebauer, J.M.' 2 primary 'Brunstein, E.' 3 primary 'Rosenbaum, S.' 4 primary 'Zaucke, F.' 5 primary 'Drogemuller, C.' 6 primary 'Leeb, T.' 7 primary 'Baumann, U.' 8 # _cell.entry_id 4AXY _cell.length_a 45.670 _cell.length_b 45.670 _cell.length_c 34.380 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4AXY _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'COLLAGEN-LIKE PEPTIDE' 1613.817 3 ? ? ? ? 2 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HSP47 BINDING COLLAGEN-LIKE PEPTIDE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)PPGPPGPTGPRGPPGPPG(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XPPGPPGPTGPRGPPGPPGX _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PRO n 1 3 PRO n 1 4 GLY n 1 5 PRO n 1 6 PRO n 1 7 GLY n 1 8 PRO n 1 9 THR n 1 10 GLY n 1 11 PRO n 1 12 ARG n 1 13 GLY n 1 14 PRO n 1 15 PRO n 1 16 GLY n 1 17 PRO n 1 18 PRO n 1 19 GLY n 1 20 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'SYNTHETIC CONSTRUCT' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4AXY _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 4AXY _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4AXY A 1 ? 20 ? 4AXY 0 ? 19 ? 0 19 2 1 4AXY B 1 ? 20 ? 4AXY 0 ? 19 ? 0 19 3 1 4AXY C 1 ? 20 ? 4AXY 0 ? 19 ? 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 # _exptl.entry_id 4AXY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.48 _exptl_crystal.density_percent_sol 16.7 _exptl_crystal.description 'MR WAS DONE WITH PARTS OF THE STRUCTURE PUBLISHED IN THE SAME ARTICLE AS THIS ENTRY.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.75 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '3.15 M AMMONIUM SULFATE, 0.05 M CITRIC ACID PH 5.75' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2011-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06DA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06DA _diffrn_source.pdbx_wavelength 1 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4AXY _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100.00 _reflns.d_resolution_high 1.24 _reflns.number_obs 10802 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.6 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.24 _reflns_shell.d_res_low 1.31 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.60 _reflns_shell.pdbx_redundancy 6.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4AXY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10764 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.18 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.294 _refine.ls_d_res_high 1.24 _refine.ls_percent_reflns_obs 99.92 _refine.ls_R_factor_obs 0.1511 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1499 _refine.ls_R_factor_R_free 0.1728 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 539 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.12 _refine.pdbx_overall_phase_error 20.18 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 348 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 416 _refine_hist.d_res_high 1.24 _refine_hist.d_res_low 32.294 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.011 ? ? 396 'X-RAY DIFFRACTION' ? f_angle_d 1.444 ? ? 549 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 7.786 ? ? 176 'X-RAY DIFFRACTION' ? f_chiral_restr 0.039 ? ? 41 'X-RAY DIFFRACTION' ? f_plane_restr 0.008 ? ? 89 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.2400 1.3648 2479 0.1724 100.00 0.2111 . . 130 . . 'X-RAY DIFFRACTION' . 1.3648 1.5623 2517 0.1435 100.00 0.1871 . . 133 . . 'X-RAY DIFFRACTION' . 1.5623 1.9683 2547 0.1336 100.00 0.1501 . . 134 . . 'X-RAY DIFFRACTION' . 1.9683 32.3045 2682 0.1539 100.00 0.1734 . . 142 . . # _struct.entry_id 4AXY _struct.title 'A molecular basis for the action of the collagen-specific chaperone Hsp47-SERPINH1 and its structure-specific client recognition.' _struct.pdbx_descriptor 'COLLAGEN-LIKE PEPTIDE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4AXY _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'STRUCTURAL PROTEIN, CMP' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A PRO 2 N ? ? A ACE 0 A PRO 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale ? ? A NH2 20 N ? ? ? 1_555 A GLY 19 C ? ? A NH2 19 A GLY 18 1_555 ? ? ? ? ? ? ? 1.326 ? covale3 covale ? ? B ACE 1 C ? ? ? 1_555 B PRO 2 N ? ? B ACE 0 B PRO 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? B NH2 20 N ? ? ? 1_555 B GLY 19 C ? ? B NH2 19 B GLY 18 1_555 ? ? ? ? ? ? ? 1.299 ? covale5 covale ? ? C ACE 1 C ? ? ? 1_555 C PRO 2 N ? ? C ACE 0 C PRO 1 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? C NH2 20 N ? ? ? 1_555 C GLY 19 C ? ? C NH2 19 C GLY 18 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 4AXY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4AXY _atom_sites.fract_transf_matrix[1][1] 0.021896 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021896 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029087 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 PRO 2 1 1 PRO PRO A . n A 1 3 PRO 3 2 2 PRO PRO A . n A 1 4 GLY 4 3 3 GLY GLY A . n A 1 5 PRO 5 4 4 PRO PRO A . n A 1 6 PRO 6 5 5 PRO PRO A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 THR 9 8 8 THR THR A . n A 1 10 GLY 10 9 9 GLY GLY A . n A 1 11 PRO 11 10 10 PRO PRO A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 PRO 14 13 13 PRO PRO A . n A 1 15 PRO 15 14 14 PRO PRO A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 PRO 17 16 16 PRO PRO A . n A 1 18 PRO 18 17 17 PRO PRO A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 NH2 20 19 19 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 PRO 2 1 1 PRO PRO B . n B 1 3 PRO 3 2 2 PRO PRO B . n B 1 4 GLY 4 3 3 GLY GLY B . n B 1 5 PRO 5 4 4 PRO PRO B . n B 1 6 PRO 6 5 5 PRO PRO B . n B 1 7 GLY 7 6 6 GLY GLY B . n B 1 8 PRO 8 7 7 PRO PRO B . n B 1 9 THR 9 8 8 THR THR B . n B 1 10 GLY 10 9 9 GLY GLY B . n B 1 11 PRO 11 10 10 PRO PRO B . n B 1 12 ARG 12 11 11 ARG ARG B . n B 1 13 GLY 13 12 12 GLY GLY B . n B 1 14 PRO 14 13 13 PRO PRO B . n B 1 15 PRO 15 14 14 PRO PRO B . n B 1 16 GLY 16 15 15 GLY GLY B . n B 1 17 PRO 17 16 16 PRO PRO B . n B 1 18 PRO 18 17 17 PRO PRO B . n B 1 19 GLY 19 18 18 GLY GLY B . n B 1 20 NH2 20 19 19 NH2 NH2 B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 PRO 2 1 1 PRO PRO C . n C 1 3 PRO 3 2 2 PRO PRO C . n C 1 4 GLY 4 3 3 GLY GLY C . n C 1 5 PRO 5 4 4 PRO PRO C . n C 1 6 PRO 6 5 5 PRO PRO C . n C 1 7 GLY 7 6 6 GLY GLY C . n C 1 8 PRO 8 7 7 PRO PRO C . n C 1 9 THR 9 8 8 THR THR C . n C 1 10 GLY 10 9 9 GLY GLY C . n C 1 11 PRO 11 10 10 PRO PRO C . n C 1 12 ARG 12 11 11 ARG ARG C . n C 1 13 GLY 13 12 12 GLY GLY C . n C 1 14 PRO 14 13 13 PRO PRO C . n C 1 15 PRO 15 14 14 PRO PRO C . n C 1 16 GLY 16 15 15 GLY GLY C . n C 1 17 PRO 17 16 16 PRO PRO C . n C 1 18 PRO 18 17 17 PRO PRO C . n C 1 19 GLY 19 18 18 GLY GLY C . n C 1 20 NH2 20 19 19 NH2 NH2 C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 2001 2001 HOH HOH A . D 2 HOH 2 2002 2002 HOH HOH A . D 2 HOH 3 2003 2003 HOH HOH A . D 2 HOH 4 2004 2004 HOH HOH A . D 2 HOH 5 2005 2005 HOH HOH A . D 2 HOH 6 2006 2006 HOH HOH A . D 2 HOH 7 2007 2007 HOH HOH A . D 2 HOH 8 2008 2008 HOH HOH A . D 2 HOH 9 2009 2009 HOH HOH A . D 2 HOH 10 2010 2010 HOH HOH A . D 2 HOH 11 2011 2011 HOH HOH A . D 2 HOH 12 2012 2012 HOH HOH A . D 2 HOH 13 2013 2013 HOH HOH A . D 2 HOH 14 2014 2014 HOH HOH A . D 2 HOH 15 2015 2015 HOH HOH A . D 2 HOH 16 2016 2016 HOH HOH A . D 2 HOH 17 2017 2017 HOH HOH A . D 2 HOH 18 2018 2018 HOH HOH A . D 2 HOH 19 2019 2019 HOH HOH A . D 2 HOH 20 2020 2020 HOH HOH A . D 2 HOH 21 2021 2021 HOH HOH A . D 2 HOH 22 2022 2022 HOH HOH A . D 2 HOH 23 2023 2023 HOH HOH A . D 2 HOH 24 2024 2024 HOH HOH A . D 2 HOH 25 2025 2025 HOH HOH A . D 2 HOH 26 2026 2026 HOH HOH A . D 2 HOH 27 2027 2027 HOH HOH A . D 2 HOH 28 2028 2028 HOH HOH A . E 2 HOH 1 2001 2001 HOH HOH B . E 2 HOH 2 2002 2002 HOH HOH B . E 2 HOH 3 2003 2003 HOH HOH B . E 2 HOH 4 2004 2004 HOH HOH B . E 2 HOH 5 2005 2005 HOH HOH B . E 2 HOH 6 2006 2006 HOH HOH B . E 2 HOH 7 2007 2007 HOH HOH B . E 2 HOH 8 2008 2008 HOH HOH B . E 2 HOH 9 2009 2009 HOH HOH B . E 2 HOH 10 2010 2010 HOH HOH B . E 2 HOH 11 2011 2011 HOH HOH B . E 2 HOH 12 2012 2012 HOH HOH B . E 2 HOH 13 2013 2013 HOH HOH B . E 2 HOH 14 2014 2014 HOH HOH B . E 2 HOH 15 2015 2015 HOH HOH B . E 2 HOH 16 2016 2016 HOH HOH B . E 2 HOH 17 2017 2017 HOH HOH B . E 2 HOH 18 2018 2018 HOH HOH B . E 2 HOH 19 2019 2019 HOH HOH B . E 2 HOH 20 2020 2020 HOH HOH B . E 2 HOH 21 2021 2021 HOH HOH B . F 2 HOH 1 2001 2001 HOH HOH C . F 2 HOH 2 2002 2002 HOH HOH C . F 2 HOH 3 2003 2003 HOH HOH C . F 2 HOH 4 2004 2004 HOH HOH C . F 2 HOH 5 2005 2005 HOH HOH C . F 2 HOH 6 2006 2006 HOH HOH C . F 2 HOH 7 2007 2007 HOH HOH C . F 2 HOH 8 2008 2008 HOH HOH C . F 2 HOH 9 2009 2009 HOH HOH C . F 2 HOH 10 2010 2010 HOH HOH C . F 2 HOH 11 2011 2011 HOH HOH C . F 2 HOH 12 2012 2012 HOH HOH C . F 2 HOH 13 2013 2013 HOH HOH C . F 2 HOH 14 2014 2014 HOH HOH C . F 2 HOH 15 2015 2015 HOH HOH C . F 2 HOH 16 2016 2016 HOH HOH C . F 2 HOH 17 2017 2017 HOH HOH C . F 2 HOH 18 2018 2018 HOH HOH C . F 2 HOH 19 2019 2019 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3610 ? 1 MORE -23.4 ? 1 'SSA (A^2)' 3280 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2008 ? D HOH . 2 1 A HOH 2013 ? D HOH . 3 1 B HOH 2008 ? E HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-15 2 'Structure model' 1 1 2012-08-29 3 'Structure model' 1 2 2015-10-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE: DEV_1051)' ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # _pdbx_entry_details.entry_id 4AXY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;ACETYL GROUP (ACE): THE N-TERMINUS WAS ACETYLATED TO PREVENT CHARGES. AMINO GROUP (NH2): THE C-TERMINUS WAS AM AMIDATED TO PREVENT CHARGES. ; _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2019 ? ? O A HOH 2022 ? ? 1.70 2 1 O A HOH 2011 ? ? O A HOH 2012 ? ? 2.02 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2001 ? ? 1_555 O A HOH 2001 ? ? 7_555 1.92 2 1 O B HOH 2004 ? ? 1_555 O B HOH 2004 ? ? 8_554 1.94 3 1 O A HOH 2011 ? ? 1_555 O C HOH 2018 ? ? 6_545 2.03 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 O _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ACE _pdbx_validate_rmsd_angle.auth_seq_id_1 0 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 C _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ACE _pdbx_validate_rmsd_angle.auth_seq_id_2 0 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 1 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 106.84 _pdbx_validate_rmsd_angle.angle_target_value 121.10 _pdbx_validate_rmsd_angle.angle_deviation -14.26 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.90 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 2004 ? 6.55 . 2 1 O ? B HOH 2005 ? 6.74 . # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #