HEADER LIGASE 20-JUN-12 4AYC TITLE RNF8 RING DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF8; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING DOMAIN, RESIDUES 351-485; COMPND 5 SYNONYM: RING FINGER PROTEIN 8; COMPND 6 EC: 6.3.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF8; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RING DOMAIN, RESIDUES 351-485; COMPND 12 SYNONYM: RING FINGER PROTEIN 8; COMPND 13 EC: 6.3.2.-; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX6P; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PGEX6P KEYWDS LIGASE, DNA DAMAGE, K63 CHAINS EXPDTA X-RAY DIFFRACTION AUTHOR F.MATTIROLI,J.H.A.VISSERS,W.J.VAN DIJK,P.IKPA,E.CITTERIO,W.VERMEULEN, AUTHOR 2 J.A.MARTEIJN,T.K.SIXMA REVDAT 1 26-SEP-12 4AYC 0 JRNL AUTH F.MATTIROLI,J.H.A.VISSERS,W.J.VAN DIJK,P.IKPA,E.CITTERIO, JRNL AUTH 2 W.VERMEULEN,J.A.MARTEIJN,T.K.SIXMA JRNL TITL RNF168 UBIQUITINATES K13-15 ON H2A/H2AX TO DRIVE DNA DAMAGE JRNL TITL 2 SIGNALING JRNL REF CELL(CAMBRIDGE,MASS.) V. 150 1182 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22980979 JRNL DOI 10.1016/J.CELL.2012.08.005 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU, REMARK 3 STEINER,NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 98.90 REMARK 3 NUMBER OF REFLECTIONS : 26652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20136 REMARK 3 R VALUE (WORKING SET) : 0.19973 REMARK 3 FREE R VALUE : 0.22948 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1414 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.949 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.296 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.348 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2209 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.632 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23 REMARK 3 B22 (A**2) : -0.46 REMARK 3 B33 (A**2) : 0.23 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -0.00 REMARK 3 B23 (A**2) : -0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2327 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2310 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3127 ; 1.231 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5374 ; 0.742 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 4.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.672 ;25.575 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 500 ;13.007 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;11.763 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2515 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 484 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 348 A 370 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1630 80.9370 25.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.4972 T22: 0.0831 REMARK 3 T33: 0.3551 T12: 0.1100 REMARK 3 T13: 0.1278 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 3.2277 L22: 30.0862 REMARK 3 L33: 5.0347 L12: -3.5257 REMARK 3 L13: -2.1799 L23: 5.5107 REMARK 3 S TENSOR REMARK 3 S11: 0.1568 S12: -0.0577 S13: 0.1088 REMARK 3 S21: 0.7178 S22: 0.0914 S23: 0.2477 REMARK 3 S31: -0.2793 S32: -0.0517 S33: -0.2481 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 371 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2310 45.4630 29.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.7860 T22: 0.1478 REMARK 3 T33: 0.6592 T12: 0.1254 REMARK 3 T13: 0.0634 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 4.0254 L22: 37.8520 REMARK 3 L33: 0.9862 L12: -12.3335 REMARK 3 L13: 1.9784 L23: -6.0732 REMARK 3 S TENSOR REMARK 3 S11: -0.3942 S12: -0.1559 S13: 0.0021 REMARK 3 S21: 1.3575 S22: 0.4439 S23: 0.0672 REMARK 3 S31: -0.2721 S32: -0.1081 S33: -0.0497 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 465 REMARK 3 RESIDUE RANGE : A 900 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): 8.1000 14.1960 27.5510 REMARK 3 T TENSOR REMARK 3 T11: 0.1923 T22: 0.0193 REMARK 3 T33: 0.2932 T12: -0.0472 REMARK 3 T13: -0.0467 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.2183 L22: 5.4460 REMARK 3 L33: 1.4446 L12: 0.5543 REMARK 3 L13: -0.1061 L23: -0.5527 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.0248 S13: -0.0302 REMARK 3 S21: 0.3469 S22: -0.0232 S23: -0.3027 REMARK 3 S31: -0.1949 S32: 0.0716 S33: 0.0558 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 466 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1250 25.1520 18.3560 REMARK 3 T TENSOR REMARK 3 T11: 0.3281 T22: 0.0653 REMARK 3 T33: 0.3390 T12: -0.0778 REMARK 3 T13: -0.0763 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 7.0547 L22: 11.5486 REMARK 3 L33: 8.1965 L12: -2.3377 REMARK 3 L13: -3.6278 L23: 0.3640 REMARK 3 S TENSOR REMARK 3 S11: 0.2016 S12: -0.0116 S13: 0.3064 REMARK 3 S21: 0.1786 S22: -0.0450 S23: -0.6669 REMARK 3 S31: -0.1506 S32: 0.2889 S33: -0.1565 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 358 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3580 51.3780 20.8380 REMARK 3 T TENSOR REMARK 3 T11: 0.5558 T22: 0.1421 REMARK 3 T33: 0.6209 T12: 0.0859 REMARK 3 T13: 0.0029 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 0.7408 L22: 47.2799 REMARK 3 L33: 0.5826 L12: 3.8556 REMARK 3 L13: -0.5175 L23: -5.0636 REMARK 3 S TENSOR REMARK 3 S11: -0.1232 S12: 0.0582 S13: 0.1720 REMARK 3 S21: -0.5201 S22: 0.2420 S23: -0.0849 REMARK 3 S31: 0.0750 S32: -0.0539 S33: -0.1188 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 403 B 440 REMARK 3 RESIDUE RANGE : B 900 B 901 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1410 9.5970 23.8890 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.1003 REMARK 3 T33: 0.5098 T12: -0.0023 REMARK 3 T13: -0.0037 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 7.0732 L22: 4.2495 REMARK 3 L33: 1.6041 L12: -0.5894 REMARK 3 L13: -1.1832 L23: 0.2965 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.5139 S13: 0.0193 REMARK 3 S21: -0.0540 S22: -0.0381 S23: 0.8475 REMARK 3 S31: -0.1684 S32: -0.3511 S33: 0.0318 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 441 B 467 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1240 15.7030 29.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.0587 REMARK 3 T33: 0.4280 T12: 0.0080 REMARK 3 T13: 0.0366 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.1303 L22: 4.2478 REMARK 3 L33: 3.2347 L12: -0.5307 REMARK 3 L13: -0.7834 L23: -0.4876 REMARK 3 S TENSOR REMARK 3 S11: 0.0767 S12: 0.0748 S13: 0.3557 REMARK 3 S21: 0.4082 S22: -0.0438 S23: 0.5427 REMARK 3 S31: -0.2611 S32: -0.2887 S33: -0.0329 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 468 B 485 REMARK 3 ORIGIN FOR THE GROUP (A): -15.3060 15.9520 38.5200 REMARK 3 T TENSOR REMARK 3 T11: 0.6645 T22: 0.3462 REMARK 3 T33: 0.6863 T12: 0.1124 REMARK 3 T13: 0.2615 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 7.2762 L22: 8.9392 REMARK 3 L33: 5.5758 L12: 1.7241 REMARK 3 L13: -0.9008 L23: -0.2956 REMARK 3 S TENSOR REMARK 3 S11: 0.3059 S12: -0.7798 S13: 0.1146 REMARK 3 S21: 2.0628 S22: 0.2984 S23: 0.9096 REMARK 3 S31: -0.1936 S32: -0.3817 S33: -0.6043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RELATIVE TO THE PUBLICATION TWO SIDECHAINS REMARK 3 WERE ADDED TO THE MODEL (RESIDUES A482 AND B485) RESULTING IN REMARK 3 SLIGHTLY DIFFERENT STATISTICS. REMARK 4 REMARK 4 4AYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-12. REMARK 100 THE PDBE ID CODE IS EBI-52952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED REMARK 200 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL (PILATUS 6M) REMARK 200 DETECTOR MANUFACTURER : DECTRIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 47.37 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.9 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.80 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.9 REMARK 200 R MERGE FOR SHELL (I) : 0.60 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.1 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.8 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA CACODYLATE, PH 6.9, REMARK 280 2.5 M AMMONIUM SULPHATE, 0.8 MM REMARK 280 N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.68700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 106.85850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.68700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 106.85850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 484 REMARK 465 PHE A 485 REMARK 465 LEU B 348 REMARK 465 GLY B 349 REMARK 465 SER B 350 REMARK 465 MET B 351 REMARK 465 GLU B 352 REMARK 465 GLU B 353 REMARK 465 LEU B 354 REMARK 465 ASN B 355 REMARK 465 ARG B 356 REMARK 465 SER B 357 REMARK 465 LYS B 358 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2B ASN A 394 OE2B GLU A 398 1.73 REMARK 500 ND1 HIS A 420 ZN ZN A 1484 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 419 3.70 85.42 REMARK 500 ILE A 435 57.65 -98.52 REMARK 500 ALA B 419 1.83 83.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPQ A1489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1488 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B1489 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CSW RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FHA DOMAIN OF HUMAN REMARK 900 UBIQUITINLIGASE PROTEIN RNF8 DBREF 4AYC A 351 485 UNP O76064 RNF8_HUMAN 351 485 DBREF 4AYC B 351 485 UNP O76064 RNF8_HUMAN 351 485 SEQADV 4AYC LEU A 348 UNP O76064 EXPRESSION TAG SEQADV 4AYC GLY A 349 UNP O76064 EXPRESSION TAG SEQADV 4AYC SER A 350 UNP O76064 EXPRESSION TAG SEQADV 4AYC LEU B 348 UNP O76064 EXPRESSION TAG SEQADV 4AYC GLY B 349 UNP O76064 EXPRESSION TAG SEQADV 4AYC SER B 350 UNP O76064 EXPRESSION TAG SEQRES 1 A 138 LEU GLY SER MET GLU GLU LEU ASN ARG SER LYS LYS ASP SEQRES 2 A 138 PHE GLU ALA ILE ILE GLN ALA LYS ASN LYS GLU LEU GLU SEQRES 3 A 138 GLN THR LYS GLU GLU LYS GLU LYS MET GLN ALA GLN LYS SEQRES 4 A 138 GLU GLU VAL LEU SER HIS MET ASN ASP VAL LEU GLU ASN SEQRES 5 A 138 GLU LEU GLN CYS ILE ILE CYS SER GLU TYR PHE ILE GLU SEQRES 6 A 138 ALA VAL THR LEU ASN CYS ALA HIS SER PHE CYS SER TYR SEQRES 7 A 138 CYS ILE ASN GLU TRP MET LYS ARG LYS ILE GLU CYS PRO SEQRES 8 A 138 ILE CYS ARG LYS ASP ILE LYS SER LYS THR TYR SER LEU SEQRES 9 A 138 VAL LEU ASP ASN CYS ILE ASN LYS MET VAL ASN ASN LEU SEQRES 10 A 138 SER SER GLU VAL LYS GLU ARG ARG ILE VAL LEU ILE ARG SEQRES 11 A 138 GLU ARG LYS ALA LYS ARG LEU PHE SEQRES 1 B 138 LEU GLY SER MET GLU GLU LEU ASN ARG SER LYS LYS ASP SEQRES 2 B 138 PHE GLU ALA ILE ILE GLN ALA LYS ASN LYS GLU LEU GLU SEQRES 3 B 138 GLN THR LYS GLU GLU LYS GLU LYS MET GLN ALA GLN LYS SEQRES 4 B 138 GLU GLU VAL LEU SER HIS MET ASN ASP VAL LEU GLU ASN SEQRES 5 B 138 GLU LEU GLN CYS ILE ILE CYS SER GLU TYR PHE ILE GLU SEQRES 6 B 138 ALA VAL THR LEU ASN CYS ALA HIS SER PHE CYS SER TYR SEQRES 7 B 138 CYS ILE ASN GLU TRP MET LYS ARG LYS ILE GLU CYS PRO SEQRES 8 B 138 ILE CYS ARG LYS ASP ILE LYS SER LYS THR TYR SER LEU SEQRES 9 B 138 VAL LEU ASP ASN CSO ILE ASN LYS MET VAL ASN ASN LEU SEQRES 10 B 138 SER SER GLU VAL LYS GLU ARG ARG ILE VAL LEU ILE ARG SEQRES 11 B 138 GLU ARG LYS ALA LYS ARG LEU PHE MODRES 4AYC CSO B 456 CYS S-HYDROXYCYSTEINE HET ZN A1484 1 HET ZN A1485 1 HET SO4 A1486 5 HET SO4 A1487 5 HET SO4 A1488 5 HET CPQ A1489 60 HET CSO B 456 7 HET ZN B1486 1 HET ZN B1487 1 HET GOL B1488 6 HET CL B1489 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CPQ N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN CPQ DEOXY-BIGCHAP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CSO C3 H7 N O3 S FORMUL 3 ZN 4(ZN 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 CPQ C42 H75 N3 O15 FORMUL 6 GOL C3 H8 O3 FORMUL 7 CL CL 1- FORMUL 8 HOH *58(H2 O) HELIX 1 1 GLY A 349 LEU A 401 1 53 HELIX 2 2 SER A 424 MET A 431 1 8 HELIX 3 3 SER A 450 ASN A 462 1 13 HELIX 4 4 SER A 465 ALA A 481 1 17 HELIX 5 5 ASP B 360 GLU B 400 1 41 HELIX 6 6 SER B 424 LYS B 434 1 11 HELIX 7 7 SER B 450 ASN B 462 1 13 HELIX 8 8 SER B 465 ARG B 479 1 15 SHEET 1 AA 3 SER A 421 CYS A 423 0 SHEET 2 AA 3 ALA A 413 LEU A 416 -1 O VAL A 414 N PHE A 422 SHEET 3 AA 3 LYS A 447 TYR A 449 -1 O THR A 448 N THR A 415 SHEET 1 BA 3 SER B 421 CYS B 423 0 SHEET 2 BA 3 ALA B 413 LEU B 416 -1 O VAL B 414 N PHE B 422 SHEET 3 BA 3 LYS B 447 TYR B 449 -1 O THR B 448 N THR B 415 SITE 1 AC1 4 CYS A 418 HIS A 420 CYS A 437 CYS A 440 SITE 1 AC2 4 CYS A 403 CYS A 406 CYS A 423 CYS A 426 SITE 1 AC3 3 SER A 465 SER A 466 GLU A 467 SITE 1 AC4 3 LYS A 442 ASP A 443 TYR B 449 SITE 1 AC5 5 LEU A 354 ARG A 477 ALA A 481 LYS A 482 SITE 2 AC5 5 PHE B 361 SITE 1 AC6 10 ILE A 405 GLU A 429 TRP A 430 LYS A 432 SITE 2 AC6 10 ARG A 433 LYS A 434 HOH A2021 TYR B 425 SITE 3 AC6 10 CYS B 426 ARG B 479 SITE 1 AC7 4 CYS B 418 HIS B 420 CYS B 437 CYS B 440 SITE 1 AC8 4 CYS B 403 CYS B 406 CYS B 423 CYS B 426 SITE 1 AC9 5 MET A 431 ILE A 444 LYS A 445 LYS A 447 SITE 2 AC9 5 MET B 431 SITE 1 BC1 1 ASP B 443 CRYST1 47.374 213.717 34.102 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029324 0.00000