HEADER TRANSFERASE 21-JUN-12 4AYJ TITLE MOLECULAR STRUCTURE OF A METAL-INDEPENDENT BACTERIAL TITLE 2 GLYCOSYLTRANSFERASE THAT CATALYZES THE SYNTHESIS OF HISTO-BLOOD GROUP TITLE 3 A ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOGT - METAL-INDEPENDENT GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 1-246; COMPND 5 EC: 2.4.1.40; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 28116; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET42B KEYWDS TRANSFERASE, CATALYSIS EXPDTA X-RAY DIFFRACTION AUTHOR N.THIYAGARAJAN,T.T.K.PHAM,B.STINSON,A.SUNDRIYAL,P.TUMBALE,M.LIZOTTE- AUTHOR 2 WANIEWSKIB,K.BREWB,K.R.ACHARYA REVDAT 8 20-DEC-23 4AYJ 1 REMARK HETSYN LINK REVDAT 7 29-JUL-20 4AYJ 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE ATOM REVDAT 6 15-MAY-19 4AYJ 1 REMARK LINK REVDAT 5 25-FEB-15 4AYJ 1 JRNL REVDAT 4 29-JAN-14 4AYJ 1 AUTHOR JRNL REVDAT 3 09-OCT-13 4AYJ 1 JRNL REVDAT 2 26-DEC-12 4AYJ 1 JRNL REVDAT 1 19-DEC-12 4AYJ 0 JRNL AUTH N.THIYAGARAJAN,T.T.K.PHAM,B.STINSON,A.SUNDRIYAL,P.TUMBALE, JRNL AUTH 2 M.LIZOTTE-WANIEWSKI,K.BREW,K.R.ACHARYA JRNL TITL STRUCTURE OF A METAL-INDEPENDENT BACTERIAL JRNL TITL 2 GLYCOSYLTRANSFERASE THAT CATALYZES THE SYNTHESIS OF JRNL TITL 3 HISTO-BLOOD GROUP A ANTIGEN JRNL REF SCI.REP. V. 2 940 2012 JRNL REFN ESSN 2045-2322 JRNL PMID 23230506 JRNL DOI 10.1038/SREP00940 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 18641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.7122 - 5.7380 0.93 2532 159 0.1675 0.2113 REMARK 3 2 5.7380 - 4.5546 0.94 2563 126 0.1484 0.2177 REMARK 3 3 4.5546 - 3.9789 0.94 2518 136 0.1382 0.2278 REMARK 3 4 3.9789 - 3.6152 0.94 2527 144 0.1784 0.2780 REMARK 3 5 3.6152 - 3.3561 0.94 2503 127 0.2173 0.3129 REMARK 3 6 3.3561 - 3.1582 0.94 2535 133 0.2434 0.3774 REMARK 3 7 3.1582 - 3.0000 0.93 2513 125 0.2585 0.3778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 21.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.920 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.77340 REMARK 3 B22 (A**2) : -1.90540 REMARK 3 B33 (A**2) : 11.79610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 19.98580 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8202 REMARK 3 ANGLE : 1.429 11156 REMARK 3 CHIRALITY : 0.104 1179 REMARK 3 PLANARITY : 0.008 1399 REMARK 3 DIHEDRAL : 16.580 3064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290052968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18669 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 70.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4AYL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BOGT6A (4 MG/ML) AND SACCHARIDE (10 REMARK 280 MM) WERE INCUBATED OVERNIGHT AT 16 DEG C AND CRYSTALS WERE GROWN REMARK 280 IN A WELL SOLUTION CONTAINING 20 % PEG 3350, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 8.5 AND 0.2 M NA/K TARTRATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.93500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 232 REMARK 465 LYS A 233 REMARK 465 PRO A 234 REMARK 465 GLN A 235 REMARK 465 TYR A 236 REMARK 465 GLY A 237 REMARK 465 GLY A 238 REMARK 465 HIS A 239 REMARK 465 GLU A 240 REMARK 465 LEU A 241 REMARK 465 LEU A 242 REMARK 465 ARG A 243 REMARK 465 ARG A 244 REMARK 465 LYS A 245 REMARK 465 ASN A 246 REMARK 465 TYR B 236 REMARK 465 GLY B 237 REMARK 465 GLY B 238 REMARK 465 HIS B 239 REMARK 465 GLU B 240 REMARK 465 LEU B 241 REMARK 465 LEU B 242 REMARK 465 ARG B 243 REMARK 465 ARG B 244 REMARK 465 LYS B 245 REMARK 465 ASN B 246 REMARK 465 PRO C 234 REMARK 465 GLN C 235 REMARK 465 TYR C 236 REMARK 465 GLY C 237 REMARK 465 GLY C 238 REMARK 465 HIS C 239 REMARK 465 GLU C 240 REMARK 465 LEU C 241 REMARK 465 LEU C 242 REMARK 465 ARG C 243 REMARK 465 ARG C 244 REMARK 465 LYS C 245 REMARK 465 ASN C 246 REMARK 465 GLY D 237 REMARK 465 GLY D 238 REMARK 465 HIS D 239 REMARK 465 GLU D 240 REMARK 465 LEU D 241 REMARK 465 LEU D 242 REMARK 465 ARG D 243 REMARK 465 ARG D 244 REMARK 465 LYS D 245 REMARK 465 ASN D 246 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 60 CG CD CE NZ REMARK 480 LYS C 60 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU D 64 ND2 ASN D 69 1.45 REMARK 500 NZ LYS D 128 O5 BGC G 1 1.79 REMARK 500 NZ LYS B 128 O5 BGC E 1 2.00 REMARK 500 O3 BGC G 1 O5 GAL G 2 2.04 REMARK 500 O LEU C 84 OG1 THR C 88 2.06 REMARK 500 NH2 ARG C 2 O GLU C 87 2.09 REMARK 500 OE2 GLU D 50 NH1 ARG D 58 2.10 REMARK 500 O LEU D 64 CG ASN D 69 2.13 REMARK 500 O ARG A 179 OG1 THR A 182 2.13 REMARK 500 OG1 THR C 142 OD1 ASP C 180 2.14 REMARK 500 O GLU A 25 NE2 GLN A 30 2.16 REMARK 500 OG1 THR A 101 O ILE A 225 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 12 O LEU D 200 2645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 45 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 190 -125.10 63.34 REMARK 500 ASN A 202 74.43 -119.95 REMARK 500 PRO A 221 47.73 -84.38 REMARK 500 ILE A 225 -62.47 -91.69 REMARK 500 ASP B 49 -2.58 70.66 REMARK 500 SER B 102 147.10 -174.68 REMARK 500 HIS B 190 -142.10 59.98 REMARK 500 PRO B 221 48.36 -94.43 REMARK 500 ASN B 232 -75.96 -130.36 REMARK 500 PRO B 234 -174.29 -60.00 REMARK 500 TYR C 27 -55.23 -127.42 REMARK 500 GLN C 32 -12.62 79.97 REMARK 500 ASP C 49 -1.29 65.81 REMARK 500 SER C 102 143.05 -175.55 REMARK 500 ARG C 151 -60.37 -95.10 REMARK 500 THR C 172 -70.69 -54.84 REMARK 500 HIS C 190 -140.71 60.21 REMARK 500 PRO C 221 47.34 -88.34 REMARK 500 ASN C 232 157.33 174.26 REMARK 500 TYR D 27 -62.72 -130.15 REMARK 500 ASP D 31 -39.96 -137.74 REMARK 500 GLN D 32 -4.51 80.05 REMARK 500 ASP D 49 -2.51 65.21 REMARK 500 SER D 102 147.82 -176.33 REMARK 500 HIS D 190 -133.59 60.90 REMARK 500 TYR D 214 109.65 -55.49 REMARK 500 PRO D 221 49.99 -78.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 115 GLY A 116 -135.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AYL RELATED DB: PDB REMARK 900 MOLECULAR STRUCTURE OF A METAL-INDEPENDENT BACTERIAL REMARK 900 GLYCOSYLTRANSFERASE THAT CATALYZES THE SYNTHESIS OF HISTO -BLOOD REMARK 900 GROUP A ANTIGEN DBREF 4AYJ A 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 DBREF 4AYJ B 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 DBREF 4AYJ C 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 DBREF 4AYJ D 1 246 UNP A7LVT2 A7LVT2_BACOV 1 246 SEQRES 1 A 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 A 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 A 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 A 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 A 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 A 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 A 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 A 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 A 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 A 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 A 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 A 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 A 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 A 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 A 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLU SER LEU ILE SEQRES 16 A 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 A 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 A 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 A 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN SEQRES 1 B 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 B 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 B 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 B 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 B 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 B 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 B 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 B 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 B 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 B 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 B 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 B 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 B 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 B 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 B 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLU SER LEU ILE SEQRES 16 B 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 B 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 B 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 B 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN SEQRES 1 C 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 C 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 C 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 C 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 C 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 C 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 C 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 C 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 C 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 C 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 C 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 C 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 C 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 C 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 C 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLU SER LEU ILE SEQRES 16 C 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 C 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 C 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 C 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN SEQRES 1 D 246 MET ARG ILE GLY ILE LEU TYR ILE CYS THR GLY LYS TYR SEQRES 2 D 246 ASP ILE PHE TRP LYS ASP PHE TYR LEU SER ALA GLU ARG SEQRES 3 D 246 TYR PHE MET GLN ASP GLN SER PHE ILE ILE GLU TYR TYR SEQRES 4 D 246 VAL PHE THR ASP SER PRO LYS LEU TYR ASP GLU GLU ASN SEQRES 5 D 246 ASN LYS HIS ILE HIS ARG ILE LYS GLN LYS ASN LEU GLY SEQRES 6 D 246 TRP PRO ASP ASN THR LEU LYS ARG PHE HIS ILE PHE LEU SEQRES 7 D 246 ARG ILE LYS GLU GLN LEU GLU ARG GLU THR ASP TYR LEU SEQRES 8 D 246 PHE PHE PHE ASN ALA ASN LEU LEU PHE THR SER PRO ILE SEQRES 9 D 246 GLY LYS GLU ILE LEU PRO PRO SER ASP SER ASN GLY LEU SEQRES 10 D 246 LEU GLY THR MET HIS PRO GLY PHE TYR ASN LYS PRO ASN SEQRES 11 D 246 SER GLU PHE THR TYR GLU ARG ARG ASP ALA SER THR ALA SEQRES 12 D 246 TYR ILE PRO GLU GLY GLU GLY ARG TYR TYR TYR ALA GLY SEQRES 13 D 246 GLY LEU SER GLY GLY CYS THR LYS ALA TYR LEU LYS LEU SEQRES 14 D 246 CYS THR THR ILE CYS SER TRP VAL ASP ARG ASP ALA THR SEQRES 15 D 246 ASN HIS ILE ILE PRO ILE TRP HIS ASP GLU SER LEU ILE SEQRES 16 D 246 ASN LYS TYR PHE LEU ASP ASN PRO PRO ALA ILE THR LEU SEQRES 17 D 246 SER PRO ALA TYR LEU TYR PRO GLU GLY TRP LEU LEU PRO SEQRES 18 D 246 PHE GLU PRO ILE ILE LEU ILE ARG ASP LYS ASN LYS PRO SEQRES 19 D 246 GLN TYR GLY GLY HIS GLU LEU LEU ARG ARG LYS ASN HET BGC E 1 12 HET GAL E 2 11 HET FUC E 3 10 HET BGC F 1 12 HET GAL F 2 11 HET FUC F 3 10 HET BGC G 1 12 HET GAL G 2 11 HET FUC G 3 10 HET BGC H 1 12 HET GAL H 2 11 HET FUC H 3 10 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 BGC 4(C6 H12 O6) FORMUL 5 GAL 4(C6 H12 O6) FORMUL 5 FUC 4(C6 H12 O5) HELIX 1 1 THR A 10 LYS A 12 5 3 HELIX 2 2 TYR A 13 TYR A 27 1 15 HELIX 3 3 PRO A 67 LYS A 72 1 6 HELIX 4 4 LYS A 72 LEU A 78 1 7 HELIX 5 5 ILE A 80 THR A 88 1 9 HELIX 6 6 GLY A 105 LEU A 109 5 5 HELIX 7 7 PRO A 129 PHE A 133 5 5 HELIX 8 8 THR A 163 ASN A 183 1 21 HELIX 9 9 HIS A 190 ASN A 202 1 13 HELIX 10 10 SER A 209 LEU A 213 5 5 HELIX 11 11 THR B 10 ILE B 15 5 6 HELIX 12 12 PHE B 16 TYR B 27 1 12 HELIX 13 13 PRO B 67 LYS B 72 1 6 HELIX 14 14 LYS B 72 LEU B 78 1 7 HELIX 15 15 ILE B 80 THR B 88 1 9 HELIX 16 16 GLY B 105 LEU B 109 5 5 HELIX 17 17 PRO B 129 PHE B 133 5 5 HELIX 18 18 THR B 163 ASN B 183 1 21 HELIX 19 19 HIS B 190 ASN B 202 1 13 HELIX 20 20 SER B 209 LEU B 213 5 5 HELIX 21 21 GLY C 11 ILE C 15 5 5 HELIX 22 22 PHE C 16 PHE C 28 1 13 HELIX 23 23 PRO C 67 LYS C 72 1 6 HELIX 24 24 LYS C 72 LEU C 78 1 7 HELIX 25 25 ILE C 80 THR C 88 1 9 HELIX 26 26 GLY C 105 LEU C 109 5 5 HELIX 27 27 THR C 163 ASN C 183 1 21 HELIX 28 28 HIS C 190 ASN C 202 1 13 HELIX 29 29 SER C 209 LEU C 213 5 5 HELIX 30 30 THR D 10 ILE D 15 5 6 HELIX 31 31 PHE D 16 TYR D 27 1 12 HELIX 32 32 PRO D 67 LYS D 72 1 6 HELIX 33 33 LYS D 72 LEU D 78 1 7 HELIX 34 34 ILE D 80 THR D 88 1 9 HELIX 35 35 GLY D 105 LEU D 109 5 5 HELIX 36 36 THR D 163 THR D 182 1 20 HELIX 37 37 HIS D 190 ASN D 202 1 13 HELIX 38 38 SER D 209 LEU D 213 5 5 SHEET 1 AA 7 ILE A 56 LYS A 60 0 SHEET 2 AA 7 ILE A 35 THR A 42 1 O TYR A 38 N HIS A 57 SHEET 3 AA 7 ARG A 2 ILE A 8 1 O ILE A 3 N GLU A 37 SHEET 4 AA 7 TYR A 90 PHE A 94 1 O TYR A 90 N GLY A 4 SHEET 5 AA 7 TYR A 154 CYS A 162 -1 O SER A 159 N PHE A 93 SHEET 6 AA 7 LEU A 117 MET A 121 -1 O LEU A 118 N GLY A 160 SHEET 7 AA 7 ILE A 206 LEU A 208 1 O ILE A 206 N GLY A 119 SHEET 1 AB 3 LEU A 98 PHE A 100 0 SHEET 2 AB 3 ILE A 226 ILE A 228 -1 O LEU A 227 N LEU A 99 SHEET 3 AB 3 TYR A 214 PRO A 215 1 O TYR A 214 N ILE A 228 SHEET 1 BA 7 ILE B 56 LYS B 60 0 SHEET 2 BA 7 ILE B 35 THR B 42 1 O TYR B 38 N HIS B 57 SHEET 3 BA 7 ARG B 2 ILE B 8 1 O ILE B 3 N GLU B 37 SHEET 4 BA 7 TYR B 90 PHE B 94 1 O TYR B 90 N GLY B 4 SHEET 5 BA 7 TYR B 154 CYS B 162 -1 O SER B 159 N PHE B 93 SHEET 6 BA 7 LEU B 117 MET B 121 -1 O LEU B 118 N GLY B 160 SHEET 7 BA 7 ILE B 206 LEU B 208 1 O ILE B 206 N GLY B 119 SHEET 1 BB 3 LEU B 98 PHE B 100 0 SHEET 2 BB 3 ILE B 226 ILE B 228 -1 O LEU B 227 N LEU B 99 SHEET 3 BB 3 TYR B 214 PRO B 215 1 O TYR B 214 N ILE B 228 SHEET 1 CA 7 ILE C 56 LYS C 60 0 SHEET 2 CA 7 ILE C 35 THR C 42 1 O TYR C 38 N HIS C 57 SHEET 3 CA 7 ARG C 2 ILE C 8 1 O ILE C 3 N GLU C 37 SHEET 4 CA 7 TYR C 90 PHE C 94 1 O TYR C 90 N GLY C 4 SHEET 5 CA 7 TYR C 154 CYS C 162 -1 O SER C 159 N PHE C 93 SHEET 6 CA 7 LEU C 117 MET C 121 -1 O LEU C 118 N GLY C 160 SHEET 7 CA 7 ILE C 206 LEU C 208 1 O ILE C 206 N GLY C 119 SHEET 1 CB 3 LEU C 98 PHE C 100 0 SHEET 2 CB 3 ILE C 226 ILE C 228 -1 O LEU C 227 N LEU C 99 SHEET 3 CB 3 TYR C 214 PRO C 215 1 O TYR C 214 N ILE C 228 SHEET 1 DA 7 ILE D 56 LYS D 60 0 SHEET 2 DA 7 ILE D 35 THR D 42 1 O TYR D 38 N HIS D 57 SHEET 3 DA 7 ARG D 2 ILE D 8 1 O ILE D 3 N GLU D 37 SHEET 4 DA 7 TYR D 90 PHE D 94 1 O TYR D 90 N GLY D 4 SHEET 5 DA 7 TYR D 154 CYS D 162 -1 O SER D 159 N PHE D 93 SHEET 6 DA 7 LEU D 118 MET D 121 -1 O LEU D 118 N GLY D 160 SHEET 7 DA 7 ILE D 206 LEU D 208 1 O ILE D 206 N GLY D 119 SHEET 1 DB 3 LEU D 98 PHE D 100 0 SHEET 2 DB 3 ILE D 226 ILE D 228 -1 O LEU D 227 N LEU D 99 SHEET 3 DB 3 TYR D 214 PRO D 215 1 O TYR D 214 N ILE D 228 LINK O4 BGC E 1 C1 GAL E 2 1555 1555 1.49 LINK O2 GAL E 2 C1 FUC E 3 1555 1555 1.42 LINK O4 BGC F 1 C1 GAL F 2 1555 1555 1.45 LINK O2 GAL F 2 C1 FUC F 3 1555 1555 1.42 LINK O4 BGC G 1 C1 GAL G 2 1555 1555 1.46 LINK O2 GAL G 2 C1 FUC G 3 1555 1555 1.41 LINK O4 BGC H 1 C1 GAL H 2 1555 1555 1.47 LINK O2 GAL H 2 C1 FUC H 3 1555 1555 1.42 CISPEP 1 TRP A 66 PRO A 67 0 -14.40 CISPEP 2 TRP B 66 PRO B 67 0 -13.66 CISPEP 3 TRP C 66 PRO C 67 0 -6.73 CISPEP 4 TRP D 66 PRO D 67 0 3.74 CISPEP 5 PRO D 234 GLN D 235 0 -8.08 CRYST1 70.850 93.870 75.510 90.00 93.82 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014114 0.000000 0.000942 0.00000 SCALE2 0.000000 0.010653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013273 0.00000