HEADER HYDROLASE 23-JUN-12 4AZ6 TITLE DIFFERENTIAL INHIBITION OF THE TANDEM GH20 CATALYTIC MODULES IN THE TITLE 2 PNEUMOCOCCAL EXO-BETA-D-N-ACETYLGLUCOSAMINIDASE, STRH COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-N-ACETYLHEXOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC MODULE, RESIDUES 181-613; COMPND 5 SYNONYM: GLYCOSIDE HYDROLASE 20; COMPND 6 EC: 3.2.1.52; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.PLUVINAGE,K.A.STUBBS,D.J.VOCADLO,A.B.BORASTON REVDAT 4 20-DEC-23 4AZ6 1 REMARK SHEET REVDAT 3 13-NOV-13 4AZ6 1 JRNL REVDAT 2 30-OCT-13 4AZ6 1 JRNL REVDAT 1 10-JUL-13 4AZ6 0 JRNL AUTH B.PLUVINAGE,K.A.STUBBS,D.J.VOCADLO,A.B.BORASTON JRNL TITL INHIBITION OF THE FAMILY 20 GLYCOSIDE HYDROLASE CATALYTIC JRNL TITL 2 MODULES IN THE STREPTOCOCCUS PNEUMONIAE JRNL TITL 3 EXO-BETA-D-N-ACETYLGLUCOSAMINIDASE, STRH. JRNL REF ORG.BIOMOL.CHEM. V. 11 7907 2013 JRNL REFN ISSN 1477-0520 JRNL PMID 24132305 JRNL DOI 10.1039/C3OB41579A REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 88573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.116 REMARK 3 R VALUE (WORKING SET) : 0.115 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 652 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.050 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3915 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2636 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5333 ; 1.360 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6432 ; 0.894 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 5.785 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;35.538 ;25.585 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 677 ;11.421 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4583 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6550 ; 3.096 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 110 ;35.563 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6987 ; 8.460 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1290053030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93267 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 28.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2YL6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.15000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.80000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.30000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.15000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.80000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 56.30000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.15000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.80000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.15000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.80000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2393 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2394 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 180 CG ND1 CD2 CE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 389 CE NZ REMARK 480 GLU A 503 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2513 O HOH A 2514 1.94 REMARK 500 O HOH A 2140 O HOH A 2144 2.01 REMARK 500 O HOH A 2317 O HOH A 2557 2.03 REMARK 500 O HOH A 2139 O HOH A 2140 2.08 REMARK 500 O HOH A 2140 O HOH A 2141 2.09 REMARK 500 O HOH A 2140 O HOH A 2142 2.09 REMARK 500 O HOH A 2317 O HOH A 2558 2.12 REMARK 500 OE1 GLU A 206 O HOH A 2042 2.13 REMARK 500 O HOH A 2054 O HOH A 2618 2.13 REMARK 500 O HOH A 2221 O HOH A 2224 2.13 REMARK 500 O HOH A 2136 O HOH A 2140 2.14 REMARK 500 OD2 ASP A 259 O HOH A 2140 2.14 REMARK 500 O HOH A 2317 O HOH A 2319 2.15 REMARK 500 OD1 ASP A 259 O HOH A 2122 2.16 REMARK 500 O HOH A 2618 O HOH A 2619 2.17 REMARK 500 OD2 ASP A 400 O HOH A 2384 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE LYS A 561 O HOH A 2397 4565 1.90 REMARK 500 O HOH A 2223 O HOH A 2317 4565 1.98 REMARK 500 O HOH A 2161 O HOH A 2317 2565 2.09 REMARK 500 O HOH A 2227 O HOH A 2470 8455 2.16 REMARK 500 O HOH A 2112 O HOH A 2464 8455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 503 CD GLU A 503 OE1 -0.161 REMARK 500 GLU A 503 CD GLU A 503 OE2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 225 92.22 -166.22 REMARK 500 ASP A 226 -73.26 69.99 REMARK 500 TYR A 261 117.07 -160.17 REMARK 500 LYS A 350 -10.65 68.99 REMARK 500 LYS A 350 -13.66 70.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2322 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OAN A 1614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P15 A 1618 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YL5 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR REMARK 900 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS REMARK 900 RELATED ID: 2YL6 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR REMARK 900 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS REMARK 900 RELATED ID: 2YL8 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR REMARK 900 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS REMARK 900 RELATED ID: 2YL9 RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR REMARK 900 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS REMARK 900 RELATED ID: 2YLA RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR REMARK 900 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS REMARK 900 RELATED ID: 2YLL RELATED DB: PDB REMARK 900 INHIBITION OF THE PNEUMOCOCCAL VIRULENCE FACTOR STRH AND MOLECULAR REMARK 900 INSIGHTS INTO N-GLYCAN RECOGNITION AND HYDROLYSIS REMARK 900 RELATED ID: 4AZ5 RELATED DB: PDB REMARK 900 DIFFERENTIAL INHIBITION OF THE TANDEM GH20 CATALYTIC MODULES IN THE REMARK 900 PNEUMOCOCCAL EXO-BETA-D-N- ACETYLGLUCOSAMINIDASE, STRH REMARK 900 RELATED ID: 4AZ7 RELATED DB: PDB REMARK 900 DIFFERENTIAL INHIBITION OF THE TANDEM GH20 CATALYTIC MODULES IN THE REMARK 900 PNEUMOCOCCAL EXO-BETA-D-N- ACETYLGLUCOSAMINIDASE, STRH DBREF 4AZ6 A 181 613 UNP P49610 STRH_STRPN 181 613 SEQADV 4AZ6 SER A 179 UNP P49610 EXPRESSION TAG SEQADV 4AZ6 HIS A 180 UNP P49610 EXPRESSION TAG SEQRES 1 A 435 SER HIS ASN GLU LYS LEU ALA LYS LYS LYS ILE VAL SER SEQRES 2 A 435 ILE ASP ALA GLY ARG LYS TYR PHE SER PRO GLU GLN LEU SEQRES 3 A 435 LYS GLU ILE ILE ASP LYS ALA LYS HIS TYR GLY TYR THR SEQRES 4 A 435 ASP LEU HIS LEU LEU VAL GLY ASN ASP GLY LEU ARG PHE SEQRES 5 A 435 MET LEU ASP ASP MET SER ILE THR ALA ASN GLY LYS THR SEQRES 6 A 435 TYR ALA SER ASP ASP VAL LYS ARG ALA ILE GLU LYS GLY SEQRES 7 A 435 THR ASN ASP TYR TYR ASN ASP PRO ASN GLY ASN HIS LEU SEQRES 8 A 435 THR GLU SER GLN MET THR ASP LEU ILE ASN TYR ALA LYS SEQRES 9 A 435 ASP LYS GLY ILE GLY LEU ILE PRO THR VAL ASN SER PRO SEQRES 10 A 435 GLY HIS MET ASP ALA ILE LEU ASN ALA MET LYS GLU LEU SEQRES 11 A 435 GLY ILE GLN ASN PRO ASN PHE SER TYR PHE GLY LYS LYS SEQRES 12 A 435 SER ALA ARG THR VAL ASP LEU ASP ASN GLU GLN ALA VAL SEQRES 13 A 435 ALA PHE THR LYS ALA LEU ILE ASP LYS TYR ALA ALA TYR SEQRES 14 A 435 PHE ALA LYS LYS THR GLU ILE PHE ASN ILE GLY LEU ASP SEQRES 15 A 435 GLU TYR ALA ASN ASP ALA THR ASP ALA LYS GLY TRP SER SEQRES 16 A 435 VAL LEU GLN ALA ASP LYS TYR TYR PRO ASN GLU GLY TYR SEQRES 17 A 435 PRO VAL LYS GLY TYR GLU LYS PHE ILE ALA TYR ALA ASN SEQRES 18 A 435 ASP LEU ALA ARG ILE VAL LYS SER HIS GLY LEU LYS PRO SEQRES 19 A 435 MET ALA PHE ASN ASP GLY ILE TYR TYR ASN SER ASP THR SEQRES 20 A 435 SER PHE GLY SER PHE ASP LYS ASP ILE ILE VAL SER MET SEQRES 21 A 435 TRP THR GLY GLY TRP GLY GLY TYR ASP VAL ALA SER SER SEQRES 22 A 435 LYS LEU LEU ALA GLU LYS GLY HIS GLN ILE LEU ASN THR SEQRES 23 A 435 ASN ASP ALA TRP TYR TYR VAL LEU GLY ARG ASN ALA ASP SEQRES 24 A 435 GLY GLN GLY TRP TYR ASN LEU ASP GLN GLY LEU ASN GLY SEQRES 25 A 435 ILE LYS ASN THR PRO ILE THR SER VAL PRO LYS THR GLU SEQRES 26 A 435 GLY ALA ASP ILE PRO ILE ILE GLY GLY MET VAL ALA ALA SEQRES 27 A 435 TRP ALA ASP THR PRO SER ALA ARG TYR SER PRO SER ARG SEQRES 28 A 435 LEU PHE LYS LEU MET ARG HIS PHE ALA ASN ALA ASN ALA SEQRES 29 A 435 GLU TYR PHE ALA ALA ASP TYR GLU SER ALA GLU GLN ALA SEQRES 30 A 435 LEU ASN GLU VAL PRO LYS ASP LEU ASN ARG TYR THR ALA SEQRES 31 A 435 GLU SER VAL THR ALA VAL LYS GLU ALA GLU LYS ALA ILE SEQRES 32 A 435 ARG SER LEU ASP SER ASN LEU SER ARG ALA GLN GLN ASP SEQRES 33 A 435 THR ILE ASP GLN ALA ILE ALA LYS LEU GLN GLU THR VAL SEQRES 34 A 435 ASN ASN LEU THR LEU THR HET OAN A1614 25 HET EDO A1615 4 HET EDO A1616 4 HET EDO A1617 4 HET P15 A1618 20 HETNAM OAN O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N- HETNAM 2 OAN PHENYLCARBAMATE HETNAM EDO 1,2-ETHANEDIOL HETNAM P15 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL HETSYN OAN PUGNAC HETSYN EDO ETHYLENE GLYCOL FORMUL 2 OAN C15 H19 N3 O7 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 6 P15 C13 H28 O7 FORMUL 7 HOH *652(H2 O) HELIX 1 1 SER A 179 ALA A 185 1 7 HELIX 2 2 SER A 200 GLY A 215 1 16 HELIX 3 3 ALA A 245 TYR A 261 1 17 HELIX 4 4 GLU A 271 LYS A 284 1 14 HELIX 5 5 MET A 298 GLY A 309 1 12 HELIX 6 6 ASN A 330 ALA A 349 1 20 HELIX 7 7 LYS A 370 TYR A 381 1 12 HELIX 8 8 LYS A 389 HIS A 408 1 20 HELIX 9 9 TYR A 420 ASP A 424 5 5 HELIX 10 10 SER A 450 LYS A 457 1 8 HELIX 11 11 ASN A 465 TYR A 469 5 5 HELIX 12 12 ASN A 483 THR A 494 1 12 HELIX 13 13 SER A 526 ASN A 541 1 16 HELIX 14 14 TYR A 549 GLU A 558 1 10 HELIX 15 15 THR A 567 SER A 583 1 17 HELIX 16 16 GLN A 592 ASN A 609 1 18 SHEET 1 AA10 LYS A 187 ASP A 193 0 SHEET 2 AA10 GLY A 511 TRP A 517 1 O GLY A 512 N ILE A 189 SHEET 3 AA10 TYR A 470 VAL A 471 1 O TYR A 470 N TRP A 517 SHEET 4 AA10 ASP A 218 GLY A 224 0 SHEET 5 AA10 GLY A 287 SER A 294 0 SHEET 6 AA10 ILE A 354 GLY A 358 0 SHEET 7 AA10 LYS A 411 PHE A 415 0 SHEET 8 AA10 ILE A 435 MET A 438 0 SHEET 9 AA10 ILE A 461 ASN A 463 0 SHEET 10 AA10 LYS A 187 ASP A 193 1 O LYS A 187 N GLY A 512 SHEET 1 AB 2 PHE A 230 MET A 231 0 SHEET 2 AB 2 LEU A 269 THR A 270 1 O LEU A 269 N MET A 231 SHEET 1 AC 2 ILE A 237 ALA A 239 0 SHEET 2 AC 2 LYS A 242 TYR A 244 -1 O LYS A 242 N ALA A 239 SHEET 1 AD 2 ASN A 314 TYR A 317 0 SHEET 2 AD 2 LYS A 320 VAL A 326 -1 O LYS A 320 N TYR A 317 CISPEP 1 SER A 294 PRO A 295 0 -7.99 SITE 1 AC1 17 ARG A 196 ARG A 251 HIS A 297 ASP A 360 SITE 2 AC1 17 GLU A 361 TRP A 439 TRP A 443 TYR A 469 SITE 3 AC1 17 TRP A 481 TYR A 482 TRP A 517 ASP A 519 SITE 4 AC1 17 EDO A1615 EDO A1616 HOH A2059 HOH A2463 SITE 5 AC1 17 HOH A2648 SITE 1 AC2 7 HIS A 297 ARG A 324 GLU A 361 ASN A 364 SITE 2 AC2 7 OAN A1614 HOH A2019 HOH A2649 SITE 1 AC3 8 THR A 440 GLY A 442 TRP A 443 ASP A 466 SITE 2 AC3 8 OAN A1614 HOH A2454 HOH A2650 HOH A2651 SITE 1 AC4 4 GLN A 592 THR A 595 HOH A2003 HOH A2609 SITE 1 AC5 9 TYR A 317 LYS A 370 SER A 373 TYR A 381 SITE 2 AC5 9 GLU A 384 TYR A 386 HOH A2245 HOH A2349 SITE 3 AC5 9 HOH A2652 CRYST1 78.300 109.600 112.600 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008881 0.00000