HEADER VIRUS 27-JUN-12 4AZX OBSLTE 06-NOV-13 4AZX 4CCT TITLE 4.5A ELECTRON CRYOMICROSCOPY RECONSTRUCTION OF MATURE DENGUE TITLE 2 VIRUS SEROTYPE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DENGUE VIRUS 1 E PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: DENGUE VIRUS 1 M PROTEIN; COMPND 6 CHAIN: D, E, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11053; SOURCE 4 STRAIN: PVP159 (DEN1/SG/07K3640DK1/2008); SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: DENGUE VIRUS 1; SOURCE 7 ORGANISM_TAXID: 11053; SOURCE 8 STRAIN: PVP159 (DEN1/SG/07K3640DK1/2008) KEYWDS VIRUS, FLAVIVIRUS, CRYOEM EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN A, B, C, D, E, F AUTHOR V.A.KOSTYUCHENKO,Q.ZHANG,L.C.TAN,T.S.NG,S.M.LOK REVDAT 4 06-NOV-13 4AZX 1 OBSLTE REVDAT 3 04-SEP-13 4AZX 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 2 26-JUN-13 4AZX 1 JRNL REVDAT 1 05-JUN-13 4AZX 0 JRNL AUTH V.A.KOSTYUCHENKO,Q.ZHANG,J.L.TAN,T.S.NG,S.M.LOK JRNL TITL IMMATURE AND MATURE DENGUE SEROTYPE 1 VIRUS STRUCTURES JRNL TITL 2 PROVIDE INSIGHT INTO THE MATURATION PROCESS. JRNL REF J.VIROL. V. 87 7700 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23637416 JRNL DOI 10.1128/JVI.00197-13 REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GPU-ADAPTED, EMAN1, EMAN2 REMARK 3 RECONSTRUCTION SCHEMA : MPSA WITH CROSS-COMMON LINE, 3D REMARK 3 RECONSTRUCTION WITH MAKE3D IN EMAN1 REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1TG8 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : X-RAY REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : RIGID BODY REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.2 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : 1.2 REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.5 REMARK 3 NUMBER OF PARTICLES : 6412 REMARK 3 CTF CORRECTION METHOD : WIENER FILTER WEIGHTING EACH REMARK 3 PARTICLE DURING 3D REMARK 3 RECONSTRUCTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: FTER MODELING THE STRUCTURES WERE REGULARIZED REMARK 3 USING MOLECULAR DYNAMICS WITH FLEXIBLE MOLECULAR DYNAMICS WITH REMARK 3 FLEXIBLE FITTING PROTOCOL. SUBMISSION BASED ON EXPERIMENTAL DATA REMARK 3 FROM EMDB EMD-2142.(DEPOSITION ID: 10897). REMARK 4 REMARK 4 4AZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-13. REMARK 100 THE PDBE ID CODE IS EBI-53088. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : NULL REMARK 245 NAME OF SAMPLE : DENGUE VIRUS 1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : CARBON REMARK 245 SAMPLE VITRIFICATION DETAILS : LIQUID ETHANE REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.5 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 16-DEC-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 791 REMARK 245 TEMPERATURE (KELVIN) : 100 REMARK 245 MICROSCOPE MODEL : OTHER REMARK 245 DETECTOR TYPE : GATAN 4K CCD REMARK 245 MINIMUM DEFOCUS (NM) : 989 REMARK 245 MAXIMUM DEFOCUS (NM) : 3441 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.7 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 18 REMARK 245 ILLUMINATION MODE : LOW DOSE REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : 75000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309018 -0.951046 -0.004467 -1.90358 REMARK 350 BIOMT2 2 0.951051 0.309028 -0.001890 2.86241 REMARK 350 BIOMT3 2 0.003177 -0.003664 0.999988 0.00973 REMARK 350 BIOMT1 3 -0.809016 -0.587773 -0.004050 -5.21415 REMARK 350 BIOMT2 3 0.587787 -0.808988 -0.006721 1.93655 REMARK 350 BIOMT3 3 0.000674 -0.007818 0.999969 0.00292 REMARK 350 BIOMT1 4 -0.809016 0.587787 0.000674 -5.35661 REMARK 350 BIOMT2 4 -0.587773 -0.808988 -0.007818 -1.49807 REMARK 350 BIOMT3 4 -0.004050 -0.006721 0.999969 -0.01102 REMARK 350 BIOMT1 5 0.309017 0.951051 0.003177 -2.13409 REMARK 350 BIOMT2 5 -0.951046 0.309028 -0.003664 -2.69493 REMARK 350 BIOMT3 5 -0.004467 -0.001890 0.999988 -0.01282 REMARK 350 BIOMT1 6 0.360651 0.261137 0.895399 3.89208 REMARK 350 BIOMT2 6 -0.583484 0.812123 -0.001834 -1.68545 REMARK 350 BIOMT3 6 -0.727652 -0.521789 0.445262 -5.63481 REMARK 350 BIOMT1 7 0.362647 -0.265577 0.893284 3.96175 REMARK 350 BIOMT2 7 0.592057 0.805895 -0.000762 1.74987 REMARK 350 BIOMT3 7 -0.719691 0.529151 0.449493 -5.73891 REMARK 350 BIOMT1 8 -0.137675 -0.430238 0.892155 2.51992 REMARK 350 BIOMT2 8 0.949401 -0.314027 -0.004929 2.92964 REMARK 350 BIOMT3 8 0.282281 0.846335 0.451702 -2.84989 REMARK 350 BIOMT1 9 -0.448887 -0.005289 0.893573 1.55915 REMARK 350 BIOMT2 9 -0.005289 -0.999949 -0.008576 0.22346 REMARK 350 BIOMT3 9 0.893573 -0.008576 0.448837 -0.96029 REMARK 350 BIOMT1 10 -0.140906 0.422004 0.895577 2.40720 REMARK 350 BIOMT2 10 -0.952665 -0.303951 -0.006663 -2.62883 REMARK 350 BIOMT3 10 0.269399 -0.854123 0.444856 -2.68146 REMARK 350 BIOMT1 11 -0.445787 0.851408 0.276365 -2.55222 REMARK 350 BIOMT2 11 -0.520642 0.004527 -0.853763 -6.89667 REMARK 350 BIOMT3 11 -0.728152 -0.524484 0.441261 -5.66176 REMARK 350 BIOMT1 12 0.672854 0.686061 0.276744 0.73614 REMARK 350 BIOMT2 12 -0.159295 0.499682 -0.851436 -5.90094 REMARK 350 BIOMT3 12 -0.722421 0.528808 0.445499 -5.77266 REMARK 350 BIOMT1 13 0.861282 -0.428918 0.272439 1.42179 REMARK 350 BIOMT2 13 0.423293 0.309032 -0.851658 -4.17569 REMARK 350 BIOMT3 13 0.281099 0.848839 0.447722 -2.87947 REMARK 350 BIOMT1 14 -0.140906 -0.952664 0.269399 -1.44282 REMARK 350 BIOMT2 14 0.422004 -0.303951 -0.854123 -4.10517 REMARK 350 BIOMT3 14 0.895577 -0.006663 0.444857 -0.98048 REMARK 350 BIOMT1 15 -0.948719 -0.161380 0.271825 -3.89889 REMARK 350 BIOMT2 15 -0.161379 -0.492145 -0.855424 -5.78683 REMARK 350 BIOMT3 15 0.271826 -0.855424 0.440864 -2.70003 REMARK 350 BIOMT1 16 -0.635227 0.265739 -0.725169 -9.49985 REMARK 350 BIOMT2 16 0.265740 -0.806408 -0.528289 -2.37817 REMARK 350 BIOMT3 16 -0.725169 -0.528289 0.441634 -5.65009 REMARK 350 BIOMT1 17 0.054131 0.688907 -0.722825 -7.53705 REMARK 350 BIOMT2 17 -0.686495 -0.499998 -0.527946 -5.19744 REMARK 350 BIOMT3 17 -0.725117 0.524794 0.445866 -5.77755 REMARK 350 BIOMT1 18 0.669617 0.164060 -0.724360 -5.67518 REMARK 350 BIOMT2 18 -0.689340 0.500309 -0.523929 -5.32697 REMARK 350 BIOMT3 18 0.276448 0.850162 0.448108 -2.89072 REMARK 350 BIOMT1 19 0.360651 -0.583483 -0.727653 -6.48730 REMARK 350 BIOMT2 19 0.261137 0.812123 -0.521789 -2.58776 REMARK 350 BIOMT3 19 0.895399 -0.001834 0.445262 -0.97909 REMARK 350 BIOMT1 20 -0.445787 -0.520642 -0.728152 -8.85107 REMARK 350 BIOMT2 20 0.851408 0.004528 -0.524484 -0.76530 REMARK 350 BIOMT3 20 0.276365 -0.853763 0.441261 -2.68447 REMARK 350 BIOMT1 21 0.054131 -0.686495 -0.725117 -7.34943 REMARK 350 BIOMT2 21 0.688908 -0.499998 0.524794 5.62565 REMARK 350 BIOMT3 21 -0.722825 -0.527946 0.445866 -5.61592 REMARK 350 BIOMT1 22 -0.638468 -0.260970 -0.724053 -9.42456 REMARK 350 BIOMT2 22 -0.260971 -0.811619 0.522655 2.88817 REMARK 350 BIOMT3 22 -0.724053 0.522656 0.450087 -5.74682 REMARK 350 BIOMT1 23 -0.447794 0.529219 -0.720700 -8.96323 REMARK 350 BIOMT2 23 -0.850875 -0.004533 0.525348 1.06684 REMARK 350 BIOMT3 23 0.274758 0.848473 0.452329 -2.86809 REMARK 350 BIOMT1 24 0.362647 0.592057 -0.719691 -6.60298 REMARK 350 BIOMT2 24 -0.265577 0.805896 0.529151 2.67869 REMARK 350 BIOMT3 24 0.893284 -0.000762 0.449493 -0.95804 REMARK 350 BIOMT1 25 0.672854 -0.159295 -0.722421 -5.60560 REMARK 350 BIOMT2 25 0.686062 0.499681 0.528808 5.49619 REMARK 350 BIOMT3 25 0.276744 -0.851436 0.445499 -2.65628 REMARK 350 BIOMT1 26 0.669617 -0.689340 0.276449 0.92724 REMARK 350 BIOMT2 26 0.164060 0.500310 0.850162 6.05378 REMARK 350 BIOMT3 26 -0.724360 -0.523929 0.448109 -5.60647 REMARK 350 BIOMT1 27 -0.447795 -0.850875 0.274757 -2.31791 REMARK 350 BIOMT2 27 0.529219 -0.004533 0.848473 7.18184 REMARK 350 BIOMT3 27 -0.720699 0.525348 0.452329 -5.72294 REMARK 350 BIOMT1 28 -0.946729 0.161923 0.278362 -3.89838 REMARK 350 BIOMT2 28 0.161922 -0.507821 0.846108 6.16970 REMARK 350 BIOMT3 28 0.278362 0.846108 0.454550 -2.84286 REMARK 350 BIOMT1 29 -0.137675 0.949401 0.282281 -1.63001 REMARK 350 BIOMT2 29 -0.430238 -0.314027 0.846335 4.41611 REMARK 350 BIOMT3 29 0.892155 -0.004929 0.451702 -0.94641 REMARK 350 BIOMT1 30 0.861282 0.423293 0.281099 1.35239 REMARK 350 BIOMT2 30 -0.428918 0.309032 0.848840 4.34446 REMARK 350 BIOMT3 30 0.272439 -0.851658 0.447722 -2.65442 REMARK 350 BIOMT1 31 -0.359015 0.588470 0.724439 0.63923 REMARK 350 BIOMT2 31 0.270545 0.808476 -0.522659 -2.56542 REMARK 350 BIOMT3 31 -0.893260 0.008351 -0.449462 -11.98597 REMARK 350 BIOMT1 32 0.451025 0.520639 0.724922 3.01413 REMARK 350 BIOMT2 32 0.850844 -0.005543 -0.525389 -0.77132 REMARK 350 BIOMT3 32 -0.269520 0.853759 -0.445483 -10.26604 REMARK 350 BIOMT1 33 0.636832 -0.270710 0.721915 3.65291 REMARK 350 BIOMT2 33 0.255984 -0.808980 -0.529173 -2.41195 REMARK 350 BIOMT3 33 0.727267 0.521793 -0.445887 -7.31351 REMARK 350 BIOMT1 34 -0.058373 -0.691958 0.719574 1.67278 REMARK 350 BIOMT2 34 -0.691959 -0.491511 -0.528781 -5.22002 REMARK 350 BIOMT3 34 0.719573 -0.528782 -0.450116 -7.20868 REMARK 350 BIOMT1 35 -0.673840 -0.160957 0.721133 -0.18977 REMARK 350 BIOMT2 35 -0.682960 0.508131 -0.524756 -5.31487 REMARK 350 BIOMT3 35 -0.281967 -0.846106 -0.452326 -10.09641 REMARK 350 BIOMT1 36 0.143522 0.950776 -0.274639 -4.41449 REMARK 350 BIOMT2 36 0.428318 -0.309851 -0.848844 -4.05173 REMARK 350 BIOMT3 36 -0.892157 0.004195 -0.451705 -11.99666 REMARK 350 BIOMT1 37 0.947714 0.158327 -0.277074 -1.96885 REMARK 350 BIOMT2 37 -0.165023 -0.499993 -0.850161 -5.76224 REMARK 350 BIOMT3 37 -0.273139 0.851434 -0.447723 -10.29075 REMARK 350 BIOMT1 38 0.442557 -0.851377 -0.281603 -3.32241 REMARK 350 BIOMT2 38 -0.529215 0.005548 -0.848469 -6.88756 REMARK 350 BIOMT3 38 0.723930 0.524524 -0.448107 -7.33801 REMARK 350 BIOMT1 39 -0.673840 -0.682960 -0.281967 -6.60458 REMARK 350 BIOMT2 39 -0.160956 0.508131 -0.846106 -5.87253 REMARK 350 BIOMT3 39 0.721133 -0.524756 -0.452326 -7.21902 REMARK 350 BIOMT1 40 -0.858654 0.430833 -0.277664 -7.27952 REMARK 350 BIOMT2 40 0.430832 0.313204 -0.846337 -4.11989 REMARK 350 BIOMT3 40 -0.277664 -0.846337 -0.454551 -10.09822 REMARK 350 BIOMT1 41 0.448868 -0.000865 -0.893597 -7.38976 REMARK 350 BIOMT2 41 -0.000865 -0.999999 0.000533 0.29532 REMARK 350 BIOMT3 41 -0.893597 0.000533 -0.448869 -11.98196 REMARK 350 BIOMT1 42 0.135047 -0.423888 -0.895590 -8.25539 REMARK 350 BIOMT2 42 -0.951316 -0.308208 0.002426 -2.56544 REMARK 350 BIOMT3 42 -0.277056 0.851662 -0.444873 -10.28377 REMARK 350 BIOMT1 43 -0.364253 -0.256147 -0.895382 -9.73451 REMARK 350 BIOMT2 43 -0.587087 0.809491 0.007258 -1.63673 REMARK 350 BIOMT3 43 0.722945 0.528311 -0.445240 -7.32289 REMARK 350 BIOMT1 44 -0.359015 0.270545 -0.893260 -9.78304 REMARK 350 BIOMT2 44 0.588470 0.808476 0.008351 1.79801 REMARK 350 BIOMT3 44 0.724439 -0.522659 -0.449462 -7.19116 REMARK 350 BIOMT1 45 0.143522 0.428318 -0.892157 -8.33390 REMARK 350 BIOMT2 45 0.950776 -0.309851 0.004195 2.99208 REMARK 350 BIOMT3 45 -0.274639 -0.848844 -0.451705 -10.07063 REMARK 350 BIOMT1 46 0.135047 -0.951316 -0.277056 -4.17486 REMARK 350 BIOMT2 46 -0.423888 -0.308208 0.851661 4.46824 REMARK 350 BIOMT3 46 -0.895590 0.002427 -0.444874 -11.96219 REMARK 350 BIOMT1 47 -0.863898 -0.421404 -0.275859 -7.15769 REMARK 350 BIOMT2 47 -0.421404 0.304772 0.854127 4.40121 REMARK 350 BIOMT3 47 -0.275859 0.854127 -0.440873 -10.25474 REMARK 350 BIOMT1 48 -0.668613 0.692392 -0.271200 -6.72210 REMARK 350 BIOMT2 48 0.162345 0.491827 0.855424 6.08408 REMARK 350 BIOMT3 48 0.725672 0.527919 -0.441249 -7.28905 REMARK 350 BIOMT1 49 0.451025 0.850844 -0.269519 -3.47007 REMARK 350 BIOMT2 49 0.520639 -0.005544 0.853759 7.19118 REMARK 350 BIOMT3 49 0.724922 -0.525389 -0.445483 -7.16360 REMARK 350 BIOMT1 50 0.947714 -0.165024 -0.273138 -1.89579 REMARK 350 BIOMT2 50 0.158326 -0.499993 0.851434 6.19253 REMARK 350 BIOMT3 50 -0.277074 -0.850161 -0.447723 -10.05176 REMARK 350 BIOMT1 51 -0.364253 -0.587087 0.722945 0.78732 REMARK 350 BIOMT2 51 -0.256147 0.809491 0.528311 2.70021 REMARK 350 BIOMT3 51 -0.895382 0.007258 -0.445240 -11.96467 REMARK 350 BIOMT1 52 -0.668613 0.162345 0.725672 -0.19275 REMARK 350 BIOMT2 52 0.692392 0.491827 0.527920 5.51004 REMARK 350 BIOMT3 52 -0.271200 0.855424 -0.441249 -10.24379 REMARK 350 BIOMT1 53 -0.049909 0.683392 0.728344 1.55177 REMARK 350 BIOMT2 53 0.683392 -0.508443 0.523891 5.60497 REMARK 350 BIOMT3 53 0.728344 0.523891 -0.441649 -7.28326 REMARK 350 BIOMT1 54 0.636833 0.255984 0.727267 3.61001 REMARK 350 BIOMT2 54 -0.270710 -0.808980 0.521793 2.85380 REMARK 350 BIOMT3 54 0.721914 -0.529173 -0.445887 -7.17442 REMARK 350 BIOMT1 55 0.442557 -0.529216 0.723929 3.13755 REMARK 350 BIOMT2 55 -0.851377 0.005547 0.524525 1.05856 REMARK 350 BIOMT3 55 -0.281603 -0.848469 -0.448107 -10.06770 REMARK 350 BIOMT1 56 -0.999981 0.006154 0.000025 -5.83199 REMARK 350 BIOMT2 56 0.006154 0.999949 0.008043 0.07000 REMARK 350 BIOMT3 56 0.000025 0.008043 -0.999968 -12.94406 REMARK 350 BIOMT1 57 -0.303159 0.952930 0.004480 -3.91083 REMARK 350 BIOMT2 57 0.952930 0.303130 0.006126 2.92063 REMARK 350 BIOMT3 57 0.004480 0.006126 -0.999971 -12.93081 REMARK 350 BIOMT1 58 0.812618 0.582783 0.004033 -0.60602 REMARK 350 BIOMT2 58 0.582783 -0.812626 0.001297 1.97439 REMARK 350 BIOMT3 58 0.004033 0.001297 -0.999991 -12.93153 REMARK 350 BIOMT1 59 0.805383 -0.592754 -0.000698 -0.48470 REMARK 350 BIOMT2 59 -0.592754 -0.805383 0.000229 -1.46104 REMARK 350 BIOMT3 59 -0.000698 0.000229 -1.000000 -12.94522 REMARK 350 BIOMT1 60 -0.314865 -0.949131 -0.003175 -3.71453 REMARK 350 BIOMT2 60 -0.949131 0.314850 0.004399 -2.63802 REMARK 350 BIOMT3 60 -0.003175 0.004399 -0.999985 -12.95296 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B03 RELATED DB: PDB REMARK 900 6A ELECTRON CRYOMICROSCOPY STRUCTURE OF IMMATURE DENGUE REMARK 900 VIRUS SEROTYPE 1 REMARK 900 RELATED ID: EMD-2142 RELATED DB: EMDB REMARK 900 4.5A ELECTRON CRYOMICROSCOPY RECONSTRUCTION OF MATURE DENGUE REMARK 900 VIRUS SEROTYPE 1 REMARK 900 RELATED ID: EMD-2141 RELATED DB: EMDB REMARK 900 6A ELECTRON CRYOMICROSCOPY STRUCTURE OF IMMATURE DENGUE REMARK 900 VIRUS SEROTYPE 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LABORATORY STRAIN, HAS SEVERAL MUTATIONS COMPARED TO ITS REMARK 999 PART OF WHOLE POLYPROTEIN DESCRIBED IN AEM92304.1 REMARK 999 SEQUENCED AS A PART OF POLYPROTEIN ENCODED BY THE VIRAL REMARK 999 GENOME DBREF 4AZX A 1 339 UNP G3F5K5 G3F5K5_9FLAV 281 775 DBREF 4AZX B 1 339 UNP G3F5K5 G3F5K5_9FLAV 281 775 DBREF 4AZX C 1 339 UNP G3F5K5 G3F5K5_9FLAV 281 775 DBREF 4AZX D 1 59 UNP G3F5K5 G3F5K5_9FLAV 206 280 DBREF 4AZX E 1 59 UNP G3F5K5 G3F5K5_9FLAV 206 280 DBREF 4AZX F 1 59 UNP G3F5K5 G3F5K5_9FLAV 206 280 SEQADV 4AZX SER A 7 UNP G3F5K5 GLY 287 SEE REMARK 999 SEQADV 4AZX ALA A 17 UNP G3F5K5 GLY 297 SEE REMARK 999 SEQADV 4AZX THR A 18 UNP G3F5K5 ALA 298 SEE REMARK 999 SEQADV 4AZX GLY A 19 UNP G3F5K5 THR 299 SEE REMARK 999 SEQADV 4AZX SER B 7 UNP G3F5K5 GLY 287 SEE REMARK 999 SEQADV 4AZX ALA B 17 UNP G3F5K5 GLY 297 SEE REMARK 999 SEQADV 4AZX THR B 18 UNP G3F5K5 ALA 298 SEE REMARK 999 SEQADV 4AZX GLY B 19 UNP G3F5K5 THR 299 SEE REMARK 999 SEQADV 4AZX SER C 7 UNP G3F5K5 GLY 287 SEE REMARK 999 SEQADV 4AZX ALA C 17 UNP G3F5K5 GLY 297 SEE REMARK 999 SEQADV 4AZX THR C 18 UNP G3F5K5 ALA 298 SEE REMARK 999 SEQADV 4AZX GLY C 19 UNP G3F5K5 THR 299 SEE REMARK 999 SEQRES 1 A 495 MET ARG CYS VAL GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 A 495 GLY LEU SER ALA THR GLY TRP VAL ASP VAL VAL LEU GLU SEQRES 3 A 495 HIS GLY SER CYS VAL THR THR MET ALA LYS ASP LYS PRO SEQRES 4 A 495 THR LEU ASP ILE GLU LEU LEU LYS THR GLU VAL THR ASN SEQRES 5 A 495 PRO ALA ILE LEU ARG LYS LEU CYS ILE GLU ALA LYS ILE SEQRES 6 A 495 SER ASN THR THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 A 495 GLU ALA THR LEU VAL GLU GLU GLN ASP THR ASN PHE VAL SEQRES 8 A 495 CYS ARG ARG THR PHE VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 495 CYS GLY LEU PHE GLY LYS GLY SER LEU ILE THR CYS ALA SEQRES 10 A 495 LYS PHE LYS CYS VAL THR LYS LEU GLU GLY LYS ILE VAL SEQRES 11 A 495 GLN TYR GLU ASN LEU LYS TYR SER VAL ILE VAL THR VAL SEQRES 12 A 495 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR THR SEQRES 13 A 495 GLU HIS GLY THR THR ALA THR ILE THR PRO GLN ALA PRO SEQRES 14 A 495 THR SER GLU ILE GLN LEU THR ASP TYR GLY ALA LEU THR SEQRES 15 A 495 LEU ASP CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 A 495 MET VAL LEU LEU THR MET LYS GLU LYS SER TRP LEU VAL SEQRES 17 A 495 HIS LYS GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP THR SEQRES 18 A 495 SER GLY ALA SER THR SER GLN GLU THR TRP ASN ARG GLN SEQRES 19 A 495 ASP LEU LEU VAL THR PHE LYS THR ALA HIS ALA LYS LYS SEQRES 20 A 495 GLN GLU VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 A 495 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN THR SER SEQRES 22 A 495 GLY THR THR THR ILE PHE ALA GLY HIS LEU LYS CYS ARG SEQRES 23 A 495 LEU LYS MET ASP LYS LEU THR LEU LYS GLY VAL SER TYR SEQRES 24 A 495 VAL MET CYS THR GLY SER PHE LYS LEU GLU LYS GLU VAL SEQRES 25 A 495 ALA GLU THR GLN HIS GLY THR VAL LEU VAL GLN VAL LYS SEQRES 26 A 495 TYR GLU GLY THR ASP ALA PRO CYS LYS ILE PRO PHE SER SEQRES 27 A 495 SER GLN ASP GLU LYS GLY VAL ILE GLN ASN GLY ARG LEU SEQRES 28 A 495 ILE THR ALA ASN PRO ILE VAL THR ASP LYS GLU LYS PRO SEQRES 29 A 495 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY GLU SER TYR SEQRES 30 A 495 ILE VAL VAL GLY ALA GLY GLU LYS ALA LEU LYS LEU SER SEQRES 31 A 495 TRP PHE LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU SEQRES 32 A 495 ALA THR ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY SEQRES 33 A 495 ASP THR ALA TRP ASP PHE GLY SER ILE GLY GLY VAL PHE SEQRES 34 A 495 THR SER VAL GLY LYS LEU VAL HIS GLN ILE PHE GLY THR SEQRES 35 A 495 ALA TYR GLY VAL LEU PHE SER GLY VAL SER TRP THR MET SEQRES 36 A 495 LYS ILE GLY ILE GLY ILE LEU LEU THR TRP LEU GLY LEU SEQRES 37 A 495 ASN SER ARG SER THR SER LEU SER MET THR CYS ILE ALA SEQRES 38 A 495 VAL GLY MET VAL THR LEU TYR LEU GLY VAL MET VAL GLN SEQRES 39 A 495 ALA SEQRES 1 B 495 MET ARG CYS VAL GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 B 495 GLY LEU SER ALA THR GLY TRP VAL ASP VAL VAL LEU GLU SEQRES 3 B 495 HIS GLY SER CYS VAL THR THR MET ALA LYS ASP LYS PRO SEQRES 4 B 495 THR LEU ASP ILE GLU LEU LEU LYS THR GLU VAL THR ASN SEQRES 5 B 495 PRO ALA ILE LEU ARG LYS LEU CYS ILE GLU ALA LYS ILE SEQRES 6 B 495 SER ASN THR THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 B 495 GLU ALA THR LEU VAL GLU GLU GLN ASP THR ASN PHE VAL SEQRES 8 B 495 CYS ARG ARG THR PHE VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 B 495 CYS GLY LEU PHE GLY LYS GLY SER LEU ILE THR CYS ALA SEQRES 10 B 495 LYS PHE LYS CYS VAL THR LYS LEU GLU GLY LYS ILE VAL SEQRES 11 B 495 GLN TYR GLU ASN LEU LYS TYR SER VAL ILE VAL THR VAL SEQRES 12 B 495 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR THR SEQRES 13 B 495 GLU HIS GLY THR THR ALA THR ILE THR PRO GLN ALA PRO SEQRES 14 B 495 THR SER GLU ILE GLN LEU THR ASP TYR GLY ALA LEU THR SEQRES 15 B 495 LEU ASP CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 B 495 MET VAL LEU LEU THR MET LYS GLU LYS SER TRP LEU VAL SEQRES 17 B 495 HIS LYS GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP THR SEQRES 18 B 495 SER GLY ALA SER THR SER GLN GLU THR TRP ASN ARG GLN SEQRES 19 B 495 ASP LEU LEU VAL THR PHE LYS THR ALA HIS ALA LYS LYS SEQRES 20 B 495 GLN GLU VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 B 495 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN THR SER SEQRES 22 B 495 GLY THR THR THR ILE PHE ALA GLY HIS LEU LYS CYS ARG SEQRES 23 B 495 LEU LYS MET ASP LYS LEU THR LEU LYS GLY VAL SER TYR SEQRES 24 B 495 VAL MET CYS THR GLY SER PHE LYS LEU GLU LYS GLU VAL SEQRES 25 B 495 ALA GLU THR GLN HIS GLY THR VAL LEU VAL GLN VAL LYS SEQRES 26 B 495 TYR GLU GLY THR ASP ALA PRO CYS LYS ILE PRO PHE SER SEQRES 27 B 495 SER GLN ASP GLU LYS GLY VAL ILE GLN ASN GLY ARG LEU SEQRES 28 B 495 ILE THR ALA ASN PRO ILE VAL THR ASP LYS GLU LYS PRO SEQRES 29 B 495 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY GLU SER TYR SEQRES 30 B 495 ILE VAL VAL GLY ALA GLY GLU LYS ALA LEU LYS LEU SER SEQRES 31 B 495 TRP PHE LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU SEQRES 32 B 495 ALA THR ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY SEQRES 33 B 495 ASP THR ALA TRP ASP PHE GLY SER ILE GLY GLY VAL PHE SEQRES 34 B 495 THR SER VAL GLY LYS LEU VAL HIS GLN ILE PHE GLY THR SEQRES 35 B 495 ALA TYR GLY VAL LEU PHE SER GLY VAL SER TRP THR MET SEQRES 36 B 495 LYS ILE GLY ILE GLY ILE LEU LEU THR TRP LEU GLY LEU SEQRES 37 B 495 ASN SER ARG SER THR SER LEU SER MET THR CYS ILE ALA SEQRES 38 B 495 VAL GLY MET VAL THR LEU TYR LEU GLY VAL MET VAL GLN SEQRES 39 B 495 ALA SEQRES 1 C 495 MET ARG CYS VAL GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 C 495 GLY LEU SER ALA THR GLY TRP VAL ASP VAL VAL LEU GLU SEQRES 3 C 495 HIS GLY SER CYS VAL THR THR MET ALA LYS ASP LYS PRO SEQRES 4 C 495 THR LEU ASP ILE GLU LEU LEU LYS THR GLU VAL THR ASN SEQRES 5 C 495 PRO ALA ILE LEU ARG LYS LEU CYS ILE GLU ALA LYS ILE SEQRES 6 C 495 SER ASN THR THR THR ASP SER ARG CYS PRO THR GLN GLY SEQRES 7 C 495 GLU ALA THR LEU VAL GLU GLU GLN ASP THR ASN PHE VAL SEQRES 8 C 495 CYS ARG ARG THR PHE VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 C 495 CYS GLY LEU PHE GLY LYS GLY SER LEU ILE THR CYS ALA SEQRES 10 C 495 LYS PHE LYS CYS VAL THR LYS LEU GLU GLY LYS ILE VAL SEQRES 11 C 495 GLN TYR GLU ASN LEU LYS TYR SER VAL ILE VAL THR VAL SEQRES 12 C 495 HIS THR GLY ASP GLN HIS GLN VAL GLY ASN GLU THR THR SEQRES 13 C 495 GLU HIS GLY THR THR ALA THR ILE THR PRO GLN ALA PRO SEQRES 14 C 495 THR SER GLU ILE GLN LEU THR ASP TYR GLY ALA LEU THR SEQRES 15 C 495 LEU ASP CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 C 495 MET VAL LEU LEU THR MET LYS GLU LYS SER TRP LEU VAL SEQRES 17 C 495 HIS LYS GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP THR SEQRES 18 C 495 SER GLY ALA SER THR SER GLN GLU THR TRP ASN ARG GLN SEQRES 19 C 495 ASP LEU LEU VAL THR PHE LYS THR ALA HIS ALA LYS LYS SEQRES 20 C 495 GLN GLU VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 C 495 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN THR SER SEQRES 22 C 495 GLY THR THR THR ILE PHE ALA GLY HIS LEU LYS CYS ARG SEQRES 23 C 495 LEU LYS MET ASP LYS LEU THR LEU LYS GLY VAL SER TYR SEQRES 24 C 495 VAL MET CYS THR GLY SER PHE LYS LEU GLU LYS GLU VAL SEQRES 25 C 495 ALA GLU THR GLN HIS GLY THR VAL LEU VAL GLN VAL LYS SEQRES 26 C 495 TYR GLU GLY THR ASP ALA PRO CYS LYS ILE PRO PHE SER SEQRES 27 C 495 SER GLN ASP GLU LYS GLY VAL ILE GLN ASN GLY ARG LEU SEQRES 28 C 495 ILE THR ALA ASN PRO ILE VAL THR ASP LYS GLU LYS PRO SEQRES 29 C 495 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY GLU SER TYR SEQRES 30 C 495 ILE VAL VAL GLY ALA GLY GLU LYS ALA LEU LYS LEU SER SEQRES 31 C 495 TRP PHE LYS LYS GLY SER SER ILE GLY LYS MET PHE GLU SEQRES 32 C 495 ALA THR ALA ARG GLY ALA ARG ARG MET ALA ILE LEU GLY SEQRES 33 C 495 ASP THR ALA TRP ASP PHE GLY SER ILE GLY GLY VAL PHE SEQRES 34 C 495 THR SER VAL GLY LYS LEU VAL HIS GLN ILE PHE GLY THR SEQRES 35 C 495 ALA TYR GLY VAL LEU PHE SER GLY VAL SER TRP THR MET SEQRES 36 C 495 LYS ILE GLY ILE GLY ILE LEU LEU THR TRP LEU GLY LEU SEQRES 37 C 495 ASN SER ARG SER THR SER LEU SER MET THR CYS ILE ALA SEQRES 38 C 495 VAL GLY MET VAL THR LEU TYR LEU GLY VAL MET VAL GLN SEQRES 39 C 495 ALA SEQRES 1 D 75 SER VAL ALA LEU ALA PRO HIS VAL GLY LEU GLY LEU GLU SEQRES 2 D 75 THR ARG THR GLU THR TRP MET SER SER GLU GLY ALA TRP SEQRES 3 D 75 LYS GLN ILE GLN LYS VAL GLU THR TRP ALA LEU GLY HIS SEQRES 4 D 75 PRO GLY PHE THR VAL ILE ALA LEU PHE LEU ALA HIS ALA SEQRES 5 D 75 ILE GLY THR SER ILE THR GLN LYS GLY ILE ILE PHE ILE SEQRES 6 D 75 LEU LEU MET LEU VAL THR PRO SER MET ALA SEQRES 1 E 75 SER VAL ALA LEU ALA PRO HIS VAL GLY LEU GLY LEU GLU SEQRES 2 E 75 THR ARG THR GLU THR TRP MET SER SER GLU GLY ALA TRP SEQRES 3 E 75 LYS GLN ILE GLN LYS VAL GLU THR TRP ALA LEU GLY HIS SEQRES 4 E 75 PRO GLY PHE THR VAL ILE ALA LEU PHE LEU ALA HIS ALA SEQRES 5 E 75 ILE GLY THR SER ILE THR GLN LYS GLY ILE ILE PHE ILE SEQRES 6 E 75 LEU LEU MET LEU VAL THR PRO SER MET ALA SEQRES 1 F 75 SER VAL ALA LEU ALA PRO HIS VAL GLY LEU GLY LEU GLU SEQRES 2 F 75 THR ARG THR GLU THR TRP MET SER SER GLU GLY ALA TRP SEQRES 3 F 75 LYS GLN ILE GLN LYS VAL GLU THR TRP ALA LEU GLY HIS SEQRES 4 F 75 PRO GLY PHE THR VAL ILE ALA LEU PHE LEU ALA HIS ALA SEQRES 5 F 75 ILE GLY THR SER ILE THR GLN LYS GLY ILE ILE PHE ILE SEQRES 6 F 75 LEU LEU MET LEU VAL THR PRO SER MET ALA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000