data_4B06 # _entry.id 4B06 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4B06 PDBE EBI-53124 WWPDB D_1290053124 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-07-03 _pdbx_database_PDB_obs_spr.pdb_id 4BNC _pdbx_database_PDB_obs_spr.replace_pdb_id 4B06 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4AVP _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF HUMAN ETV1.' # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4B06 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-06-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Allerston, C.K.' 1 'Cooper, C.D.O.' 2 'Krojer, T.' 3 'Chaikuad, A.' 4 'Vollmar, M.' 5 'Froese, D.S.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.' 8 'Bountra, C.' 9 'Von Delft, F.' 10 'Gileadi, O.' 11 # _citation.id primary _citation.title 'Crystal Structure of the DNA-Binding Domain of Human Etv1 Complexed with DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Allerston, C.K.' 1 primary 'Cooper, C.D.O.' 2 primary 'Krojer, T.' 3 primary 'Chaikuad, A.' 4 primary 'Vollmar, M.' 5 primary 'Froese, D.S.' 6 primary 'Arrowsmith, C.H.' 7 primary 'Edwards, A.' 8 primary 'Bountra, C.' 9 primary 'Von Delft, F.' 10 primary 'Gileadi, O.' 11 # _cell.entry_id 4B06 _cell.length_a 64.883 _cell.length_b 64.883 _cell.length_c 129.587 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B06 _symmetry.space_group_name_H-M 'P 43 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ETS TRANSLOCATION VARIANT 1' 12437.209 1 ? YES 'DNA-BINDING DOMAIN' ? 2 polymer syn "5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3'" 3094.042 1 ? ? ? ? 3 polymer syn "5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP)-3'" 2995.967 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ETV1, ETS-RELATED PROTEIN 81' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SMGPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQ KVAGERYVYKFVCDPEALFSMAFSDN ; ;SMGPTSQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQ KVAGERYVYKFVCDPEALFSMAFSDN ; A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DG)(DA)(DA)(DG)(DT)(DG)' ACCGGAAGTG B ? 3 polydeoxyribonucleotide no no '(DC)(DA)(DC)(DT)(DT)(DC)(DC)(DG)(DG)(DT)' CACTTCCGGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 GLY n 1 4 PRO n 1 5 THR n 1 6 SER n 1 7 GLN n 1 8 ARG n 1 9 ARG n 1 10 GLY n 1 11 SER n 1 12 LEU n 1 13 GLN n 1 14 LEU n 1 15 TRP n 1 16 GLN n 1 17 PHE n 1 18 LEU n 1 19 VAL n 1 20 ALA n 1 21 LEU n 1 22 LEU n 1 23 ASP n 1 24 ASP n 1 25 PRO n 1 26 SER n 1 27 ASN n 1 28 SER n 1 29 HIS n 1 30 PHE n 1 31 ILE n 1 32 ALA n 1 33 TRP n 1 34 THR n 1 35 GLY n 1 36 ARG n 1 37 GLY n 1 38 MET n 1 39 GLU n 1 40 PHE n 1 41 LYS n 1 42 LEU n 1 43 ILE n 1 44 GLU n 1 45 PRO n 1 46 GLU n 1 47 GLU n 1 48 VAL n 1 49 ALA n 1 50 ARG n 1 51 ARG n 1 52 TRP n 1 53 GLY n 1 54 ILE n 1 55 GLN n 1 56 LYS n 1 57 ASN n 1 58 ARG n 1 59 PRO n 1 60 ALA n 1 61 MET n 1 62 ASN n 1 63 TYR n 1 64 ASP n 1 65 LYS n 1 66 LEU n 1 67 SER n 1 68 ARG n 1 69 SER n 1 70 LEU n 1 71 ARG n 1 72 TYR n 1 73 TYR n 1 74 TYR n 1 75 GLU n 1 76 LYS n 1 77 GLY n 1 78 ILE n 1 79 MET n 1 80 GLN n 1 81 LYS n 1 82 VAL n 1 83 ALA n 1 84 GLY n 1 85 GLU n 1 86 ARG n 1 87 TYR n 1 88 VAL n 1 89 TYR n 1 90 LYS n 1 91 PHE n 1 92 VAL n 1 93 CYS n 1 94 ASP n 1 95 PRO n 1 96 GLU n 1 97 ALA n 1 98 LEU n 1 99 PHE n 1 100 SER n 1 101 MET n 1 102 ALA n 1 103 PHE n 1 104 SER n 1 105 ASP n 1 106 ASN n 2 1 DA n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DG n 3 1 DC n 3 2 DA n 3 3 DC n 3 4 DT n 3 5 DT n 3 6 DC n 3 7 DC n 3 8 DG n 3 9 DG n 3 10 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant R3-PRARE2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC28-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? 3 1 sample ? ? 'SYNTHETIC CONSTRUCT' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP ETV1_HUMAN 1 ? ? P50549 ? 2 PDB 4B06 2 ? ? 4B06 ? 3 PDB 4B06 3 ? ? 4B06 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4B06 A 3 ? 106 ? P50549 326 ? 429 ? 326 429 2 2 4B06 B 1 ? 10 ? 4B06 1 ? 10 ? 1 10 3 3 4B06 C 1 ? 10 ? 4B06 11 ? 20 ? 11 20 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4B06 SER A 1 ? UNP P50549 ? ? 'EXPRESSION TAG' 324 1 1 4B06 MET A 2 ? UNP P50549 ? ? 'EXPRESSION TAG' 325 2 1 4B06 SER A 6 ? UNP P50549 TYR 329 'ENGINEERED MUTATION' 329 3 1 4B06 SER A 104 ? UNP P50549 PRO 427 'ENGINEERED MUTATION' 427 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4B06 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.57 _exptl_crystal.density_percent_sol 68 _exptl_crystal.description 'SEMET DERIVATIVE USED FOR ANOMALOUS DATA.' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;SEMET PROTEIN/DNA WAS CRYSTALLISED IN 20%(W/V) PEG 3350 0.2M POTASSIUM CITRATE. NATIVE PROTEIN/DNA WAS CRYSTALLISED IN 28% LMW PEG SMEAR, 100MM TRIS, PH 8.5, 200MM NACL, 5% GLYCEROL. ; # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC CCD' 2012-05-13 MIRRORS 2 PIXEL 'DECTRIS PILATUS 6M' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'DOUBLE CRYSTAL' 'SINGLE WAVELENGTH' x-ray 2 1 ? ? ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9643 1.0 2 0.9763 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'DIAMOND BEAMLINE I04' Diamond I04 0.9643 ? 2 SYNCHROTRON 'BEAMLINE I03' ? I03 0.9763 ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4B06 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 129.80 _reflns.d_resolution_high 2.90 _reflns.number_obs 6594 _reflns.number_all ? _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.60 _reflns.B_iso_Wilson_estimate 127.18 _reflns.pdbx_redundancy 8.9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.06 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 1.27 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 9.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4B06 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 6594 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.02 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 99.64 _refine.ls_R_factor_obs 0.2027 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2020 _refine.ls_R_factor_R_free 0.2148 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.70 _refine.ls_number_reflns_R_free 310 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9479 _refine.correlation_coeff_Fo_to_Fc_free 0.9613 _refine.B_iso_mean 123.90 _refine.aniso_B[1][1] -8.3777 _refine.aniso_B[2][2] -8.3777 _refine.aniso_B[3][3] 16.7553 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.431 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.256 _refine.pdbx_overall_SU_R_Blow_DPI 0.495 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.264 # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4B06 _refine_analyze.Luzzati_coordinate_error_obs 0.898 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 734 _refine_hist.pdbx_number_atoms_nucleic_acid 400 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1134 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 58.02 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1203 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.35 ? 2.00 1708 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 567 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 14 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 129 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1203 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.77 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 4.00 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 153 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1240 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.24 _refine_ls_shell.number_reflns_R_work 1722 _refine_ls_shell.R_factor_R_work 0.2279 _refine_ls_shell.percent_reflns_obs 99.64 _refine_ls_shell.R_factor_R_free 0.2440 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 4.81 _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_all 1809 _refine_ls_shell.R_factor_all 0.2287 # _struct.entry_id 4B06 _struct.title 'Crystal structure of the DNA-binding domain of human ETV1 complexed with DNA.' _struct.pdbx_descriptor 'ETS TRANSLOCATION VARIANT 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4B06 _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTIONAL ACTIVATION AND REPRESSION, DNA BINDING PROTEIN, E TWENTY-SIX, ERWING SARCOMA, PROSTATE CANCER, MELANOMA, GASTROINTESTINAL STROMAL TUMOUR, PROTEIN-DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 13 ? ASP A 24 ? GLN A 336 ASP A 347 1 ? 12 HELX_P HELX_P2 2 PRO A 25 ? SER A 28 ? PRO A 348 SER A 351 5 ? 4 HELX_P HELX_P3 3 GLU A 44 ? ASN A 57 ? GLU A 367 ASN A 380 1 ? 14 HELX_P HELX_P4 4 ASN A 62 ? GLY A 77 ? ASN A 385 GLY A 400 1 ? 16 HELX_P HELX_P5 5 ASP A 94 ? ALA A 102 ? ASP A 417 ALA A 425 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 1 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 1 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 2 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 2 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 2 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 8 N1 ? ? B DC 3 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 8 O6 ? ? B DC 3 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 8 N2 ? ? B DC 3 C DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 4 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 4 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 4 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 5 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 5 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 5 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 6 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 6 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 7 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 7 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 8 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 8 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 8 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 9 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 9 C DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 10 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B DG 10 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 10 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B DG 10 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 10 C DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 32 ? TRP A 33 ? ALA A 355 TRP A 356 AA 2 GLU A 39 ? LYS A 41 ? GLU A 362 LYS A 364 AA 3 VAL A 88 ? PHE A 91 ? VAL A 411 PHE A 414 AA 4 MET A 79 ? LYS A 81 ? MET A 402 LYS A 404 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ALA A 32 ? N ALA A 355 O LYS A 41 ? O LYS A 364 AA 2 3 N PHE A 40 ? N PHE A 363 O TYR A 89 ? O TYR A 412 AA 3 4 N LYS A 90 ? N LYS A 413 O GLN A 80 ? O GLN A 403 # _database_PDB_matrix.entry_id 4B06 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4B06 _atom_sites.fract_transf_matrix[1][1] 0.015412 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015412 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007717 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 324 ? ? ? A . n A 1 2 MET 2 325 ? ? ? A . n A 1 3 GLY 3 326 ? ? ? A . n A 1 4 PRO 4 327 ? ? ? A . n A 1 5 THR 5 328 ? ? ? A . n A 1 6 SER 6 329 ? ? ? A . n A 1 7 GLN 7 330 ? ? ? A . n A 1 8 ARG 8 331 ? ? ? A . n A 1 9 ARG 9 332 ? ? ? A . n A 1 10 GLY 10 333 ? ? ? A . n A 1 11 SER 11 334 334 SER SER A . n A 1 12 LEU 12 335 335 LEU LEU A . n A 1 13 GLN 13 336 336 GLN GLN A . n A 1 14 LEU 14 337 337 LEU LEU A . n A 1 15 TRP 15 338 338 TRP TRP A . n A 1 16 GLN 16 339 339 GLN GLN A . n A 1 17 PHE 17 340 340 PHE PHE A . n A 1 18 LEU 18 341 341 LEU LEU A . n A 1 19 VAL 19 342 342 VAL VAL A . n A 1 20 ALA 20 343 343 ALA ALA A . n A 1 21 LEU 21 344 344 LEU LEU A . n A 1 22 LEU 22 345 345 LEU LEU A . n A 1 23 ASP 23 346 346 ASP ASP A . n A 1 24 ASP 24 347 347 ASP ASP A . n A 1 25 PRO 25 348 348 PRO PRO A . n A 1 26 SER 26 349 349 SER SER A . n A 1 27 ASN 27 350 350 ASN ASN A . n A 1 28 SER 28 351 351 SER SER A . n A 1 29 HIS 29 352 352 HIS HIS A . n A 1 30 PHE 30 353 353 PHE PHE A . n A 1 31 ILE 31 354 354 ILE ILE A . n A 1 32 ALA 32 355 355 ALA ALA A . n A 1 33 TRP 33 356 356 TRP TRP A . n A 1 34 THR 34 357 357 THR THR A . n A 1 35 GLY 35 358 358 GLY GLY A . n A 1 36 ARG 36 359 359 ARG ARG A . n A 1 37 GLY 37 360 360 GLY GLY A . n A 1 38 MET 38 361 361 MET MET A . n A 1 39 GLU 39 362 362 GLU GLU A . n A 1 40 PHE 40 363 363 PHE PHE A . n A 1 41 LYS 41 364 364 LYS LYS A . n A 1 42 LEU 42 365 365 LEU LEU A . n A 1 43 ILE 43 366 366 ILE ILE A . n A 1 44 GLU 44 367 367 GLU GLU A . n A 1 45 PRO 45 368 368 PRO PRO A . n A 1 46 GLU 46 369 369 GLU GLU A . n A 1 47 GLU 47 370 370 GLU GLU A . n A 1 48 VAL 48 371 371 VAL VAL A . n A 1 49 ALA 49 372 372 ALA ALA A . n A 1 50 ARG 50 373 373 ARG ARG A . n A 1 51 ARG 51 374 374 ARG ARG A . n A 1 52 TRP 52 375 375 TRP TRP A . n A 1 53 GLY 53 376 376 GLY GLY A . n A 1 54 ILE 54 377 377 ILE ILE A . n A 1 55 GLN 55 378 378 GLN GLN A . n A 1 56 LYS 56 379 379 LYS LYS A . n A 1 57 ASN 57 380 380 ASN ASN A . n A 1 58 ARG 58 381 381 ARG ARG A . n A 1 59 PRO 59 382 382 PRO PRO A . n A 1 60 ALA 60 383 383 ALA ALA A . n A 1 61 MET 61 384 384 MET MET A . n A 1 62 ASN 62 385 385 ASN ASN A . n A 1 63 TYR 63 386 386 TYR TYR A . n A 1 64 ASP 64 387 387 ASP ASP A . n A 1 65 LYS 65 388 388 LYS LYS A . n A 1 66 LEU 66 389 389 LEU LEU A . n A 1 67 SER 67 390 390 SER SER A . n A 1 68 ARG 68 391 391 ARG ARG A . n A 1 69 SER 69 392 392 SER SER A . n A 1 70 LEU 70 393 393 LEU LEU A . n A 1 71 ARG 71 394 394 ARG ARG A . n A 1 72 TYR 72 395 395 TYR TYR A . n A 1 73 TYR 73 396 396 TYR TYR A . n A 1 74 TYR 74 397 397 TYR TYR A . n A 1 75 GLU 75 398 398 GLU GLU A . n A 1 76 LYS 76 399 399 LYS LYS A . n A 1 77 GLY 77 400 400 GLY GLY A . n A 1 78 ILE 78 401 401 ILE ILE A . n A 1 79 MET 79 402 402 MET MET A . n A 1 80 GLN 80 403 403 GLN GLN A . n A 1 81 LYS 81 404 404 LYS LYS A . n A 1 82 VAL 82 405 405 VAL VAL A . n A 1 83 ALA 83 406 406 ALA ALA A . n A 1 84 GLY 84 407 407 GLY GLY A . n A 1 85 GLU 85 408 408 GLU GLU A . n A 1 86 ARG 86 409 409 ARG ARG A . n A 1 87 TYR 87 410 410 TYR TYR A . n A 1 88 VAL 88 411 411 VAL VAL A . n A 1 89 TYR 89 412 412 TYR TYR A . n A 1 90 LYS 90 413 413 LYS LYS A . n A 1 91 PHE 91 414 414 PHE PHE A . n A 1 92 VAL 92 415 415 VAL VAL A . n A 1 93 CYS 93 416 416 CYS CYS A . n A 1 94 ASP 94 417 417 ASP ASP A . n A 1 95 PRO 95 418 418 PRO PRO A . n A 1 96 GLU 96 419 419 GLU GLU A . n A 1 97 ALA 97 420 420 ALA ALA A . n A 1 98 LEU 98 421 421 LEU LEU A . n A 1 99 PHE 99 422 422 PHE PHE A . n A 1 100 SER 100 423 423 SER SER A . n A 1 101 MET 101 424 424 MET MET A . n A 1 102 ALA 102 425 425 ALA ALA A . n A 1 103 PHE 103 426 426 PHE PHE A . n A 1 104 SER 104 427 427 SER SER A . n A 1 105 ASP 105 428 428 ASP ASP A . n A 1 106 ASN 106 429 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n C 3 1 DC 1 11 11 DC DC C . n C 3 2 DA 2 12 12 DA DA C . n C 3 3 DC 3 13 13 DC DC C . n C 3 4 DT 4 14 14 DT DT C . n C 3 5 DT 5 15 15 DT DT C . n C 3 6 DC 6 16 16 DC DC C . n C 3 7 DC 7 17 17 DC DC C . n C 3 8 DG 8 18 18 DG DG C . n C 3 9 DG 9 19 19 DG DG C . n C 3 10 DT 10 20 20 DT DT C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6880 ? 1 MORE -60.3 ? 1 'SSA (A^2)' 14420 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+3/4 0.0000000000 -1.0000000000 0.0000000000 129.7660000000 -1.0000000000 0.0000000000 0.0000000000 129.7660000000 0.0000000000 0.0000000000 -1.0000000000 97.1902500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-11 2 'Structure model' 1 1 2012-10-31 3 'Structure model' 1 2 2013-07-03 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 49.5333 61.1895 51.2844 -0.3089 0.3464 -0.3020 -0.0477 0.2193 -0.0383 8.8600 1.8089 9.2008 2.3948 -1.0853 -2.8884 -0.3813 0.3142 -0.2282 -0.8856 0.4365 0.0045 -0.1878 -0.6952 -0.0552 'X-RAY DIFFRACTION' 2 ? refined 48.5565 55.3925 66.6336 -0.6079 0.6079 0.0325 -0.0393 0.1747 0.1323 14.3945 6.9108 13.7204 -3.6410 -0.5853 -2.1720 -0.3870 -1.0205 -0.7035 0.1206 0.0604 -0.4944 0.3164 -0.4914 0.3266 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAINS B OR C' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BUSTER refinement 2.11.2 ? 1 AutoPROC 'data reduction' . ? 2 AP_SCALE 'data scaling' . ? 3 SHARP phasing . ? 4 # _pdbx_entry_details.entry_id 4B06 _pdbx_entry_details.compound_details ;ENGINEERED RESIDUE IN CHAIN A, TYR 329 TO SER ENGINEERED RESIDUE IN CHAIN A, PRO 427 TO SER ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DA 1 ? ? "C1'" B DA 1 ? ? N9 B DA 1 ? ? 110.55 108.30 2.25 0.30 N 2 1 "C1'" B DC 2 ? ? "O4'" B DC 2 ? ? "C4'" B DC 2 ? ? 103.80 110.10 -6.30 1.00 N 3 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 111.33 108.30 3.03 0.30 N 4 1 "C3'" B DC 2 ? ? "O3'" B DC 2 ? ? P B DC 3 ? ? 128.62 119.70 8.92 1.20 Y 5 1 "O4'" B DC 3 ? ? "C4'" B DC 3 ? ? "C3'" B DC 3 ? ? 98.32 104.50 -6.18 0.40 N 6 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 111.78 108.30 3.48 0.30 N 7 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 111.37 108.30 3.07 0.30 N 8 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 111.53 108.30 3.23 0.30 N 9 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 111.65 108.30 3.35 0.30 N 10 1 "C3'" B DA 7 ? ? "O3'" B DA 7 ? ? P B DG 8 ? ? 128.35 119.70 8.65 1.20 Y 11 1 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 111.26 108.30 2.96 0.30 N 12 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.93 108.30 2.63 0.30 N 13 1 "C5'" C DC 11 ? ? "C4'" C DC 11 ? ? "O4'" C DC 11 ? ? 117.26 109.80 7.46 1.10 N 14 1 "C1'" C DC 11 ? ? "O4'" C DC 11 ? ? "C4'" C DC 11 ? ? 98.23 110.10 -11.87 1.00 N 15 1 "O4'" C DC 11 ? ? "C1'" C DC 11 ? ? N1 C DC 11 ? ? 115.58 108.30 7.28 0.30 N 16 1 "O4'" C DC 13 ? ? "C1'" C DC 13 ? ? N1 C DC 13 ? ? 111.90 108.30 3.60 0.30 N 17 1 N3 C DT 14 ? ? C2 C DT 14 ? ? O2 C DT 14 ? ? 118.67 122.30 -3.63 0.60 N 18 1 "C3'" C DT 14 ? ? "O3'" C DT 14 ? ? P C DT 15 ? ? 127.74 119.70 8.04 1.20 Y 19 1 "O4'" C DC 16 ? ? "C1'" C DC 16 ? ? N1 C DC 16 ? ? 116.20 108.30 7.90 0.30 N 20 1 "C3'" C DC 16 ? ? "O3'" C DC 16 ? ? P C DC 17 ? ? 129.46 119.70 9.76 1.20 Y 21 1 "O4'" C DC 17 ? ? "C1'" C DC 17 ? ? N1 C DC 17 ? ? 113.33 108.30 5.03 0.30 N 22 1 "C3'" C DC 17 ? ? "O3'" C DC 17 ? ? P C DG 18 ? ? 127.72 119.70 8.02 1.20 Y 23 1 "O4'" C DG 19 ? ? "C1'" C DG 19 ? ? N9 C DG 19 ? ? 110.74 108.30 2.44 0.30 N 24 1 "O4'" C DT 20 ? ? "C4'" C DT 20 ? ? "C3'" C DT 20 ? ? 100.76 104.50 -3.74 0.40 N 25 1 "C4'" C DT 20 ? ? "C3'" C DT 20 ? ? "C2'" C DT 20 ? ? 96.39 102.20 -5.81 0.70 N 26 1 "O4'" C DT 20 ? ? "C1'" C DT 20 ? ? N1 C DT 20 ? ? 114.95 108.30 6.65 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 416 ? ? -104.28 76.23 2 1 ALA A 425 ? ? -106.17 49.08 3 1 PHE A 426 ? ? 178.36 158.46 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT B 9 ? ? 0.123 'SIDE CHAIN' 2 1 DT C 14 ? ? 0.143 'SIDE CHAIN' 3 1 DT C 15 ? ? 0.086 'SIDE CHAIN' 4 1 DT C 20 ? ? 0.159 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A VAL 342 ? CG1 ? A VAL 19 CG1 2 1 Y 1 A VAL 342 ? CG2 ? A VAL 19 CG2 3 1 Y 1 A ARG 359 ? CG ? A ARG 36 CG 4 1 Y 1 A ARG 359 ? CD ? A ARG 36 CD 5 1 Y 1 A ARG 359 ? NE ? A ARG 36 NE 6 1 Y 1 A ARG 359 ? CZ ? A ARG 36 CZ 7 1 Y 1 A ARG 359 ? NH1 ? A ARG 36 NH1 8 1 Y 1 A ARG 359 ? NH2 ? A ARG 36 NH2 9 1 Y 1 A LYS 364 ? CG ? A LYS 41 CG 10 1 Y 1 A LYS 364 ? CD ? A LYS 41 CD 11 1 Y 1 A LYS 364 ? CE ? A LYS 41 CE 12 1 Y 1 A LYS 364 ? NZ ? A LYS 41 NZ 13 1 Y 1 A ILE 366 ? CG1 ? A ILE 43 CG1 14 1 Y 1 A ILE 366 ? CG2 ? A ILE 43 CG2 15 1 Y 1 A ILE 366 ? CD1 ? A ILE 43 CD1 16 1 Y 1 A GLU 367 ? CG ? A GLU 44 CG 17 1 Y 1 A GLU 367 ? CD ? A GLU 44 CD 18 1 Y 1 A GLU 367 ? OE1 ? A GLU 44 OE1 19 1 Y 1 A GLU 367 ? OE2 ? A GLU 44 OE2 20 1 Y 1 A ARG 373 ? CZ ? A ARG 50 CZ 21 1 Y 1 A ARG 373 ? NH1 ? A ARG 50 NH1 22 1 Y 1 A ARG 373 ? NH2 ? A ARG 50 NH2 23 1 Y 1 A ILE 377 ? CG1 ? A ILE 54 CG1 24 1 Y 1 A ILE 377 ? CG2 ? A ILE 54 CG2 25 1 Y 1 A ILE 377 ? CD1 ? A ILE 54 CD1 26 1 Y 1 A ARG 381 ? NH1 ? A ARG 58 NH1 27 1 Y 1 A ARG 381 ? NH2 ? A ARG 58 NH2 28 1 Y 1 A GLU 398 ? CD ? A GLU 75 CD 29 1 Y 1 A GLU 398 ? OE1 ? A GLU 75 OE1 30 1 Y 1 A GLU 398 ? OE2 ? A GLU 75 OE2 31 1 Y 1 A LYS 399 ? CD ? A LYS 76 CD 32 1 Y 1 A LYS 399 ? CE ? A LYS 76 CE 33 1 Y 1 A LYS 399 ? NZ ? A LYS 76 NZ 34 1 Y 1 A VAL 405 ? CG1 ? A VAL 82 CG1 35 1 Y 1 A VAL 405 ? CG2 ? A VAL 82 CG2 36 1 Y 1 A GLU 408 ? CG ? A GLU 85 CG 37 1 Y 1 A GLU 408 ? CD ? A GLU 85 CD 38 1 Y 1 A GLU 408 ? OE1 ? A GLU 85 OE1 39 1 Y 1 A GLU 408 ? OE2 ? A GLU 85 OE2 40 1 Y 1 A VAL 411 ? CG1 ? A VAL 88 CG1 41 1 Y 1 A VAL 411 ? CG2 ? A VAL 88 CG2 42 1 Y 1 A LYS 413 ? CD ? A LYS 90 CD 43 1 Y 1 A LYS 413 ? CE ? A LYS 90 CE 44 1 Y 1 A LYS 413 ? NZ ? A LYS 90 NZ 45 1 Y 1 A VAL 415 ? CG1 ? A VAL 92 CG1 46 1 Y 1 A VAL 415 ? CG2 ? A VAL 92 CG2 47 1 Y 1 A GLU 419 ? CG ? A GLU 96 CG 48 1 Y 1 A GLU 419 ? CD ? A GLU 96 CD 49 1 Y 1 A GLU 419 ? OE1 ? A GLU 96 OE1 50 1 Y 1 A GLU 419 ? OE2 ? A GLU 96 OE2 51 1 Y 1 A PHE 426 ? CG ? A PHE 103 CG 52 1 Y 1 A PHE 426 ? CD1 ? A PHE 103 CD1 53 1 Y 1 A PHE 426 ? CD2 ? A PHE 103 CD2 54 1 Y 1 A PHE 426 ? CE1 ? A PHE 103 CE1 55 1 Y 1 A PHE 426 ? CE2 ? A PHE 103 CE2 56 1 Y 1 A PHE 426 ? CZ ? A PHE 103 CZ 57 1 Y 1 A ASP 428 ? CG ? A ASP 105 CG 58 1 Y 1 A ASP 428 ? OD1 ? A ASP 105 OD1 59 1 Y 1 A ASP 428 ? OD2 ? A ASP 105 OD2 60 1 Y 1 B DT 9 ? C7 ? B DT 9 C7 61 1 Y 1 C DT 14 ? C7 ? C DT 4 C7 62 1 Y 1 C DT 15 ? C7 ? C DT 5 C7 63 1 Y 1 C DT 20 ? C7 ? C DT 10 C7 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 324 ? A SER 1 2 1 Y 1 A MET 325 ? A MET 2 3 1 Y 1 A GLY 326 ? A GLY 3 4 1 Y 1 A PRO 327 ? A PRO 4 5 1 Y 1 A THR 328 ? A THR 5 6 1 Y 1 A SER 329 ? A SER 6 7 1 Y 1 A GLN 330 ? A GLN 7 8 1 Y 1 A ARG 331 ? A ARG 8 9 1 Y 1 A ARG 332 ? A ARG 9 10 1 Y 1 A GLY 333 ? A GLY 10 11 1 Y 1 A ASN 429 ? A ASN 106 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4B06 'double helix' 4B06 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 10 1_555 -0.674 -0.142 0.161 2.834 0.000 -0.641 1 B_DA1:DT20_C B 1 ? C 20 ? 20 1 1 B DC 2 1_555 C DG 9 1_555 0.496 -0.210 0.240 1.813 0.000 0.072 2 B_DC2:DG19_C B 2 ? C 19 ? 19 1 1 B DC 3 1_555 C DG 8 1_555 0.046 -0.349 0.587 -9.483 0.000 -2.913 3 B_DC3:DG18_C B 3 ? C 18 ? 19 1 1 B DG 4 1_555 C DC 7 1_555 0.328 -0.144 0.610 8.019 0.000 -1.039 4 B_DG4:DC17_C B 4 ? C 17 ? 19 1 1 B DG 5 1_555 C DC 6 1_555 -0.088 -0.336 -0.030 0.245 0.000 -3.178 5 B_DG5:DC16_C B 5 ? C 16 ? 19 1 1 B DA 6 1_555 C DT 5 1_555 -0.115 -0.350 -0.147 2.338 0.000 -1.879 6 B_DA6:DT15_C B 6 ? C 15 ? 20 1 1 B DA 7 1_555 C DT 4 1_555 -0.014 0.051 0.007 1.360 0.000 8.721 7 B_DA7:DT14_C B 7 ? C 14 ? 20 1 1 B DG 8 1_555 C DC 3 1_555 -0.507 -0.221 0.037 -2.517 0.000 -0.262 8 B_DG8:DC13_C B 8 ? C 13 ? 19 1 1 B DT 9 1_555 C DA 2 1_555 0.332 -0.084 0.142 -7.785 0.000 5.804 9 B_DT9:DA12_C B 9 ? C 12 ? 20 1 1 B DG 10 1_555 C DC 1 1_555 0.962 -0.238 -0.539 -9.097 0.000 -0.885 10 B_DG10:DC11_C B 10 ? C 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 10 1_555 B DC 2 1_555 C DG 9 1_555 0.618 -0.834 3.235 -0.543 5.400 36.374 -2.037 -1.052 3.075 8.591 0.864 36.763 1 BB_DA1DC2:DG19DT20_CC B 1 ? C 20 ? B 2 ? C 19 ? 1 B DC 2 1_555 C DG 9 1_555 B DC 3 1_555 C DG 8 1_555 -0.402 -1.287 3.486 -2.579 7.184 28.076 -4.177 0.221 3.092 14.472 5.195 29.075 2 BB_DC2DC3:DG18DG19_CC B 2 ? C 19 ? B 3 ? C 18 ? 1 B DC 3 1_555 C DG 8 1_555 B DG 4 1_555 C DC 7 1_555 0.356 -0.111 2.964 0.906 2.025 35.367 -0.452 -0.464 2.961 3.329 -1.490 35.435 3 BB_DC3DG4:DC17DG18_CC B 3 ? C 18 ? B 4 ? C 17 ? 1 B DG 4 1_555 C DC 7 1_555 B DG 5 1_555 C DC 6 1_555 -1.277 -0.393 3.374 0.790 6.470 34.369 -1.647 2.247 3.220 10.829 -1.322 34.963 4 BB_DG4DG5:DC16DC17_CC B 4 ? C 17 ? B 5 ? C 16 ? 1 B DG 5 1_555 C DC 6 1_555 B DA 6 1_555 C DT 5 1_555 -0.294 -0.084 3.255 -1.194 3.638 22.606 -1.494 0.320 3.212 9.195 3.017 22.923 5 BB_DG5DA6:DT15DC16_CC B 5 ? C 16 ? B 6 ? C 15 ? 1 B DA 6 1_555 C DT 5 1_555 B DA 7 1_555 C DT 4 1_555 0.077 0.041 3.206 -0.605 4.448 34.923 -0.581 -0.215 3.185 7.374 1.003 35.201 6 BB_DA6DA7:DT14DT15_CC B 6 ? C 15 ? B 7 ? C 14 ? 1 B DA 7 1_555 C DT 4 1_555 B DG 8 1_555 C DC 3 1_555 0.088 -0.577 3.357 -4.316 8.777 34.515 -2.205 -0.766 3.090 14.438 7.099 35.833 7 BB_DA7DG8:DC13DT14_CC B 7 ? C 14 ? B 8 ? C 13 ? 1 B DG 8 1_555 C DC 3 1_555 B DT 9 1_555 C DA 2 1_555 -0.833 -0.318 3.428 -2.035 0.427 32.457 -0.647 1.112 3.468 0.764 3.637 32.522 8 BB_DG8DT9:DA12DC13_CC B 8 ? C 13 ? B 9 ? C 12 ? 1 B DT 9 1_555 C DA 2 1_555 B DG 10 1_555 C DC 1 1_555 -0.672 0.954 3.477 1.011 5.945 41.640 0.664 1.049 3.557 8.311 -1.413 42.056 9 BB_DT9DG10:DC11DA12_CC B 9 ? C 12 ? B 10 ? C 11 ? #