data_4B1Q # _entry.id 4B1Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4B1Q PDBE EBI-52641 WWPDB D_1290052641 BMRB 18897 # _pdbx_database_related.db_id 18897 _pdbx_database_related.details . _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4B1Q _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2012-07-12 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hocking, H.G.' 1 'Gerwig, G.J.' 2 'Favreau, P.' 3 'Stocklin, R.' 4 'Kamerling, J.P.' 5 'Boelens, R.' 6 # _citation.id primary _citation.title 'Structure of the O-Glycosylated Conopeptide Cctx from Conus Consors Venom.' _citation.journal_abbrev Chemistry _citation.journal_volume 19 _citation.page_first 870 _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 0947-6539 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23281027 _citation.pdbx_database_id_DOI 10.1002/CHEM.201202713 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hocking, H.G.' 1 ? primary 'Gerwig, G.J.' 2 ? primary 'Dutertre, S.' 3 ? primary 'Violette, A.' 4 ? primary 'Favreau, P.' 5 ? primary 'Stocklin, R.' 6 ? primary 'Kamerling, J.P.' 7 ? primary 'Boelens, R.' 8 ? # _cell.entry_id 4B1Q _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B1Q _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CONOTOXIN CCTX' 3231.742 1 ? ? ? ? 2 branched man ;alpha-L-galactopyranose-(1-2)-beta-D-galactopyranose-(1-3)-[alpha-L-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose ; 910.823 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EXCITOTOXIN CCTX, KAPPAA-CONOTOXIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'A(HYP)WLVPSQITTCCGYN(HYP)GTMC(HYP)SCMCTNTC' _entity_poly.pdbx_seq_one_letter_code_can APWLVPSQITTCCGYNPGTMCPSCMCTNTC _entity_poly.pdbx_strand_id P _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 HYP n 1 3 TRP n 1 4 LEU n 1 5 VAL n 1 6 PRO n 1 7 SER n 1 8 GLN n 1 9 ILE n 1 10 THR n 1 11 THR n 1 12 CYS n 1 13 CYS n 1 14 GLY n 1 15 TYR n 1 16 ASN n 1 17 HYP n 1 18 GLY n 1 19 THR n 1 20 MET n 1 21 CYS n 1 22 HYP n 1 23 SER n 1 24 CYS n 1 25 MET n 1 26 CYS n 1 27 THR n 1 28 ASN n 1 29 THR n 1 30 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'CONUS CONSORS' _entity_src_nat.pdbx_ncbi_taxonomy_id 101297 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CEX_CONCN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P58928 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4B1Q _struct_ref_seq.pdbx_strand_id P _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 30 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P58928 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 30 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ? 'C8 H15 N O6' 221.208 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GXL 'L-saccharide, alpha linking' . alpha-L-galactopyranose ? 'C6 H12 O6' 180.156 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NDG 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-glucopyranose ? 'C8 H15 N O6' 221.208 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 TOCSY 1 3 1 COSY 1 4 1 H2BC 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 292.0 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 3.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '95 % H2O/ 5% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 750 # _pdbx_nmr_refine.entry_id 4B1Q _pdbx_nmr_refine.method 'CYANA AND CNS' _pdbx_nmr_refine.details 'REFINEMENT IN EXPLICIT WATER SOLVENT' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 4B1Q _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING NOE RESTRAINTS ORIGINATING FROM BOTH THE PEPTIDE AND GLYCAN COMPONENTS OF THE SYSTEM.' # _pdbx_nmr_ensemble.entry_id 4B1Q _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' # _pdbx_nmr_representative.entry_id 4B1Q _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE,SIMONSON,WARREN' 1 'structure solution' 'CcpNmr Analysis' ANALYSIS ? 2 # _exptl.entry_id 4B1Q _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 4B1Q _struct.title 'NMR structure of the glycosylated conotoxin CcTx from Conus consors' _struct.pdbx_descriptor 'CONOTOXIN CCTX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4B1Q _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text 'TOXIN, O-GLYCAN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id HYP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 22 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id THR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 27 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id HYP _struct_conf.beg_auth_asym_id P _struct_conf.beg_auth_seq_id 22 _struct_conf.end_auth_comp_id THR _struct_conf.end_auth_asym_id P _struct_conf.end_auth_seq_id 27 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 12 SG ? ? ? 1_555 A CYS 21 SG ? ? P CYS 12 P CYS 21 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 13 SG ? ? ? 1_555 A CYS 26 SG ? ? P CYS 13 P CYS 26 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 30 SG ? ? P CYS 24 P CYS 30 1_555 ? ? ? ? ? ? ? 2.026 ? ? covale1 covale both ? A ALA 1 C ? ? ? 1_555 A HYP 2 N ? ? P ALA 1 P HYP 2 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale2 covale both ? A HYP 2 C ? ? ? 1_555 A TRP 3 N ? ? P HYP 2 P TRP 3 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale3 covale one ? A SER 7 OG ? ? ? 1_555 B A2G . C1 ? ? P SER 7 A A2G 1 1_555 ? ? ? ? ? ? ? 1.423 ? O-Glycosylation covale4 covale both ? A ASN 16 C ? ? ? 1_555 A HYP 17 N ? ? P ASN 16 P HYP 17 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale5 covale both ? A HYP 17 C ? ? ? 1_555 A GLY 18 N ? ? P HYP 17 P GLY 18 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A CYS 21 C ? ? ? 1_555 A HYP 22 N ? ? P CYS 21 P HYP 22 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale7 covale both ? A HYP 22 C ? ? ? 1_555 A SER 23 N ? ? P HYP 22 P SER 23 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale8 covale both ? B A2G . O3 ? ? ? 1_555 B GAL . C1 ? ? A A2G 1 A GAL 2 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale9 covale both ? B A2G . O6 ? ? ? 1_555 B NDG . C1 ? ? A A2G 1 A NDG 4 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale10 covale both ? B GAL . O2 ? ? ? 1_555 B GXL . C1 ? ? A GAL 2 A GXL 3 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale11 covale both ? B NDG . O4 ? ? ? 1_555 B GXL . C1 ? ? A NDG 4 A GXL 5 1_555 ? ? ? ? ? ? ? 1.450 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _database_PDB_matrix.entry_id 4B1Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4B1Q _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'GAL A 2 HAS WRONG CHIRALITY AT ATOM C1' 2 'GXL A 5 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA P . n A 1 2 HYP 2 2 2 HYP HYP P . n A 1 3 TRP 3 3 3 TRP TRP P . n A 1 4 LEU 4 4 4 LEU LEU P . n A 1 5 VAL 5 5 5 VAL VAL P . n A 1 6 PRO 6 6 6 PRO PRO P . n A 1 7 SER 7 7 7 SER SER P . n A 1 8 GLN 8 8 8 GLN GLN P . n A 1 9 ILE 9 9 9 ILE ILE P . n A 1 10 THR 10 10 10 THR THR P . n A 1 11 THR 11 11 11 THR THR P . n A 1 12 CYS 12 12 12 CYS CYS P . n A 1 13 CYS 13 13 13 CYS CYS P . n A 1 14 GLY 14 14 14 GLY GLY P . n A 1 15 TYR 15 15 15 TYR TYR P . n A 1 16 ASN 16 16 16 ASN ASN P . n A 1 17 HYP 17 17 17 HYP HYP P . n A 1 18 GLY 18 18 18 GLY GLY P . n A 1 19 THR 19 19 19 THR THR P . n A 1 20 MET 20 20 20 MET MET P . n A 1 21 CYS 21 21 21 CYS CYS P . n A 1 22 HYP 22 22 22 HYP HYP P . n A 1 23 SER 23 23 23 SER SER P . n A 1 24 CYS 24 24 24 CYS CYS P . n A 1 25 MET 25 25 25 MET MET P . n A 1 26 CYS 26 26 26 CYS CYS P . n A 1 27 THR 27 27 27 THR THR P . n A 1 28 ASN 28 28 28 ASN ASN P . n A 1 29 THR 29 29 29 THR THR P . n A 1 30 CYS 30 30 30 CYS CYS P . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SER 7 P SER 7 ? SER 'GLYCOSYLATION SITE' 2 A HYP 2 P HYP 2 ? PRO 4-HYDROXYPROLINE 3 A HYP 17 P HYP 17 ? PRO 4-HYDROXYPROLINE 4 A HYP 22 P HYP 22 ? PRO 4-HYDROXYPROLINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-02-06 2 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Atomic model' 3 2 'Structure model' 'Data collection' 4 2 'Structure model' 'Derived calculations' 5 2 'Structure model' Other 6 2 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_site 2 2 'Structure model' chem_comp 3 2 'Structure model' database_PDB_caveat 4 2 'Structure model' entity 5 2 'Structure model' pdbx_branch_scheme 6 2 'Structure model' pdbx_chem_comp_identifier 7 2 'Structure model' pdbx_database_status 8 2 'Structure model' pdbx_entity_branch 9 2 'Structure model' pdbx_entity_branch_descriptor 10 2 'Structure model' pdbx_entity_branch_link 11 2 'Structure model' pdbx_entity_branch_list 12 2 'Structure model' pdbx_entity_nonpoly 13 2 'Structure model' pdbx_nmr_software 14 2 'Structure model' pdbx_nmr_spectrometer 15 2 'Structure model' pdbx_nonpoly_scheme 16 2 'Structure model' pdbx_struct_assembly_gen 17 2 'Structure model' pdbx_validate_chiral 18 2 'Structure model' struct_asym 19 2 'Structure model' struct_conn 20 2 'Structure model' struct_site 21 2 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_site.B_iso_or_equiv' 2 2 'Structure model' '_atom_site.Cartn_x' 3 2 'Structure model' '_atom_site.Cartn_y' 4 2 'Structure model' '_atom_site.Cartn_z' 5 2 'Structure model' '_atom_site.auth_asym_id' 6 2 'Structure model' '_atom_site.auth_atom_id' 7 2 'Structure model' '_atom_site.auth_comp_id' 8 2 'Structure model' '_atom_site.auth_seq_id' 9 2 'Structure model' '_atom_site.label_asym_id' 10 2 'Structure model' '_atom_site.label_atom_id' 11 2 'Structure model' '_atom_site.label_comp_id' 12 2 'Structure model' '_atom_site.label_entity_id' 13 2 'Structure model' '_atom_site.type_symbol' 14 2 'Structure model' '_chem_comp.name' 15 2 'Structure model' '_chem_comp.type' 16 2 'Structure model' '_pdbx_database_status.status_code_cs' 17 2 'Structure model' '_pdbx_database_status.status_code_mr' 18 2 'Structure model' '_pdbx_nmr_software.name' 19 2 'Structure model' '_pdbx_nmr_spectrometer.model' 20 2 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 2 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 22 2 'Structure model' '_pdbx_validate_chiral.auth_comp_id' 23 2 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 24 2 'Structure model' '_struct_conn.pdbx_dist_value' 25 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 2 'Structure model' '_struct_conn.pdbx_role' 27 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER P 7 ? ? -89.03 -153.60 2 2 SER P 7 ? ? -84.59 -156.02 3 2 TYR P 15 ? ? -111.73 -96.83 4 2 ASN P 28 ? ? 82.46 -7.00 5 3 TYR P 15 ? ? -86.77 -103.13 6 4 SER P 7 ? ? -96.92 -150.59 7 4 TYR P 15 ? ? -92.09 -88.65 8 5 SER P 7 ? ? -84.23 -155.61 9 5 TYR P 15 ? ? -102.68 -101.17 10 5 ASN P 28 ? ? 76.14 -2.69 11 6 SER P 7 ? ? -88.36 -155.34 12 6 GLN P 8 ? ? -67.83 80.65 13 6 TYR P 15 ? ? -97.09 -154.77 14 7 SER P 7 ? ? -94.35 -153.34 15 7 TYR P 15 ? ? -94.24 -89.07 16 7 ASN P 28 ? ? 72.73 30.68 17 8 TYR P 15 ? ? -92.93 -83.59 18 8 ASN P 28 ? ? 72.38 30.01 19 9 TYR P 15 ? ? -97.13 -94.90 20 9 ASN P 28 ? ? 76.16 -11.93 21 10 HYP P 2 ? ? -95.66 -159.17 22 10 SER P 7 ? ? -83.84 -159.23 23 10 TYR P 15 ? ? -100.20 -83.44 24 11 PRO P 6 ? ? -78.59 -167.46 25 11 SER P 7 ? ? -99.62 -157.10 26 11 TYR P 15 ? ? -85.44 -80.34 27 11 CYS P 21 ? ? -173.11 146.40 28 12 TYR P 15 ? ? -88.81 -89.42 29 13 TYR P 15 ? ? -81.84 -87.26 30 13 ASN P 28 ? ? 70.64 -4.63 31 14 PRO P 6 ? ? -76.83 -168.04 32 14 GLN P 8 ? ? -63.18 98.66 33 14 TYR P 15 ? ? -87.22 -82.97 34 14 ASN P 28 ? ? 82.14 10.19 35 15 CYS P 12 ? ? -65.11 98.25 36 15 TYR P 15 ? ? -84.48 -85.51 37 15 ASN P 28 ? ? 61.28 63.34 38 15 THR P 29 ? ? 166.37 129.56 39 16 TYR P 15 ? ? -90.63 -83.75 40 17 SER P 7 ? ? -80.85 -159.00 41 17 TYR P 15 ? ? -96.47 -85.56 42 18 SER P 7 ? ? -86.39 -155.63 43 18 GLN P 8 ? ? -62.26 94.10 44 18 TYR P 15 ? ? -101.73 -96.66 45 19 SER P 7 ? ? -89.41 -159.97 46 19 TYR P 15 ? ? -92.38 -92.23 47 20 CYS P 12 ? ? -69.52 97.46 48 20 TYR P 15 ? ? -87.98 -94.78 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 5 C1 ? A GAL 2 ? PLANAR . 2 5 C1 ? A GXL 5 ? PLANAR . 3 13 C1 ? A GAL 2 ? 'WRONG HAND' . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 A2G 1 A A2G 1 P A2G 1031 n B 2 GAL 2 A GAL 2 P GAL 1034 n B 2 GXL 3 A GXL 3 P GXL 1035 n B 2 NDG 4 A NDG 4 P NDG 1032 n B 2 GXL 5 A GXL 5 P GXL 1033 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal GXL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LGalpa GXL 'COMMON NAME' GMML 1.0 a-L-galactopyranose GXL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Galp GXL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAca NDG 'COMMON NAME' GMML 1.0 N-acetyl-a-D-glucopyranosamine NDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNAc NDG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'LGalpa1-2DGalpb1-3[LGalpa1-4DGlcpNAca1-6]DGalpNAca1-' 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,5,4/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221h-1a_1-5][a2122h-1a_1-5_2*NCC/3=O]/1-2-3-4-3/a3-b1_a6-d1_b2-c1_d4-e1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(3+1)][a-D-GalpNAc]{[(3+1)][b-D-Galp]{[(2+1)][a-L-Galp]{}}[(6+1)][a-D-GlcpNAc]{[(4+1)][a-L-Galp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 A2G O3 HO3 sing ? 2 2 3 GXL C1 O1 2 GAL O2 HO2 sing ? 3 2 4 NDG C1 O1 1 A2G O6 HO6 sing ? 4 2 5 GXL C1 O1 4 NDG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 A2G 1 n 2 GAL 2 n 2 GXL 3 n 2 NDG 4 n 2 GXL 5 n #