HEADER HYDROLASE 23-JUL-12 4B3D TITLE HUMANISED MONOMERIC RADA IN COMPLEX WITH 5-METHYL INDOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND RECOMBINATION PROTEIN RADA; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: ATPASE; COMPND 5 SYNONYM: RADA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: CONTAINING PUBS520 PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PBAT4 KEYWDS HYDROLASE, RECOMBINASE, THERMOSTABLE, PEPTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.E.SCOTT,M.T.EHEBAUER,T.PUKALA,M.MARSH,T.L.BLUNDELL, AUTHOR 2 A.R.VENKITARAMAN,C.ABELL,M.HYVONEN REVDAT 3 20-DEC-23 4B3D 1 REMARK REVDAT 2 27-FEB-13 4B3D 1 JRNL REVDAT 1 06-FEB-13 4B3D 0 JRNL AUTH D.E.SCOTT,M.T.EHEBAUER,T.PUKALA,M.MARSH,T.L.BLUNDELL, JRNL AUTH 2 A.R.VENKITARAMAN,C.ABELL,M.HYVONEN JRNL TITL USING A FRAGMENT-BASED APPROACH TO TARGET PROTEIN-PROTEIN JRNL TITL 2 INTERACTIONS. JRNL REF CHEMBIOCHEM V. 14 332 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23344974 JRNL DOI 10.1002/CBIC.201200521 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 57753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2791 - 4.3824 0.98 2633 147 0.1701 0.1807 REMARK 3 2 4.3824 - 3.4790 0.99 2623 137 0.1405 0.1565 REMARK 3 3 3.4790 - 3.0394 1.00 2640 150 0.1633 0.1736 REMARK 3 4 3.0394 - 2.7616 1.00 2614 152 0.1852 0.2244 REMARK 3 5 2.7616 - 2.5637 1.00 2645 134 0.1825 0.2365 REMARK 3 6 2.5637 - 2.4126 1.00 2613 141 0.1754 0.2302 REMARK 3 7 2.4126 - 2.2918 1.00 2628 124 0.1676 0.2020 REMARK 3 8 2.2918 - 2.1920 1.00 2665 135 0.1569 0.2264 REMARK 3 9 2.1920 - 2.1076 1.00 2602 133 0.1629 0.1888 REMARK 3 10 2.1076 - 2.0349 1.00 2611 141 0.1626 0.2073 REMARK 3 11 2.0349 - 1.9713 1.00 2663 148 0.1740 0.2307 REMARK 3 12 1.9713 - 1.9149 1.00 2596 122 0.1775 0.2295 REMARK 3 13 1.9149 - 1.8645 1.00 2650 158 0.1913 0.2513 REMARK 3 14 1.8645 - 1.8190 1.00 2596 135 0.1865 0.2358 REMARK 3 15 1.8190 - 1.7777 1.00 2633 143 0.1927 0.2266 REMARK 3 16 1.7777 - 1.7398 1.00 2622 142 0.1927 0.2701 REMARK 3 17 1.7398 - 1.7050 1.00 2613 147 0.2103 0.2201 REMARK 3 18 1.7050 - 1.6729 1.00 2586 143 0.2182 0.2867 REMARK 3 19 1.6729 - 1.6430 1.00 2643 144 0.2310 0.2942 REMARK 3 20 1.6430 - 1.6151 1.00 2634 124 0.2423 0.2499 REMARK 3 21 1.6151 - 1.5891 0.88 2308 135 0.2602 0.2871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 51.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56990 REMARK 3 B22 (A**2) : -3.66160 REMARK 3 B33 (A**2) : 2.09170 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.15760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3683 REMARK 3 ANGLE : 0.982 4992 REMARK 3 CHIRALITY : 0.069 560 REMARK 3 PLANARITY : 0.004 655 REMARK 3 DIHEDRAL : 15.763 1392 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4B3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 43.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PZN CHAIN A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG-1000, 100 MM NAK PHOSPHATE, PH REMARK 280 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.62300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 107 REMARK 465 GLN A 286 REMARK 465 ALA A 287 REMARK 465 ASN A 300 REMARK 465 GLY A 301 REMARK 465 GLY A 302 REMARK 465 HIS A 303 REMARK 465 ILE A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 HIS A 307 REMARK 465 SER A 308 REMARK 465 ALA A 330 REMARK 465 PRO A 331 REMARK 465 HIS A 332 REMARK 465 LEU A 333 REMARK 465 PRO A 334 REMARK 465 GLU A 335 REMARK 465 MET C 107 REMARK 465 GLN C 286 REMARK 465 ALA C 287 REMARK 465 ASN C 300 REMARK 465 GLY C 301 REMARK 465 GLY C 302 REMARK 465 HIS C 303 REMARK 465 ILE C 304 REMARK 465 LEU C 305 REMARK 465 ALA C 306 REMARK 465 HIS C 307 REMARK 465 ALA C 330 REMARK 465 PRO C 331 REMARK 465 HIS C 332 REMARK 465 LEU C 333 REMARK 465 PRO C 334 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG C 257 NH1 REMARK 480 SER C 308 N REMARK 480 ASP C 329 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 2109 O HOH C 2148 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2068 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2100 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2121 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A2174 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2175 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2186 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH A2187 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A2188 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A2210 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2217 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH C2062 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH C2063 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH C2065 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH C2066 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH C2067 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH C2098 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH C2116 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH C2127 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH C2131 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH C2170 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C2172 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH C2183 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH C2199 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH C2319 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH C2320 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH C2322 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH C2323 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5MI C 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5MI A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5MI C 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5MI A 1352 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PZN RELATED DB: PDB REMARK 900 RAD51 (RADA) REMARK 900 RELATED ID: 4A6P RELATED DB: PDB REMARK 900 RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS REMARK 900 RELATED ID: 4A6X RELATED DB: PDB REMARK 900 RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO ATP REMARK 900 RELATED ID: 4A74 RELATED DB: PDB REMARK 900 RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO REMARK 900 AMPPNP REMARK 900 RELATED ID: 4A7O RELATED DB: PDB REMARK 900 RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO ADP REMARK 900 RELATED ID: 4B2I RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH INDAZOLE REMARK 900 RELATED ID: 4B2L RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH L-METHYLESTER TRYPTOPHAN REMARK 900 RELATED ID: 4B2P RELATED DB: PDB REMARK 900 RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO GTP REMARK 900 RELATED ID: 4B32 RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH NAPHT-1-OL REMARK 900 RELATED ID: 4B33 RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH NAPHT-2-OL REMARK 900 RELATED ID: 4B34 RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH 2-AMINO BENZOTHIAZOLE REMARK 900 RELATED ID: 4B35 RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH 4-METHYLESTER INDOLE REMARK 900 RELATED ID: 4B3B RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH FHTA TETRAPEPTIDE REMARK 900 RELATED ID: 4B3C RELATED DB: PDB REMARK 900 HUMANISED MONOMERIC RADA IN COMPLEX WITH 5-HYDROXY INDOLE DBREF 4B3D A 108 287 UNP O74036 RADA_PYRFU 108 287 DBREF 4B3D A 300 349 UNP O74036 RADA_PYRFU 300 349 DBREF 4B3D C 108 287 UNP O74036 RADA_PYRFU 108 287 DBREF 4B3D C 300 349 UNP O74036 RADA_PYRFU 300 349 SEQADV 4B3D MET A 107 UNP O74036 EXPRESSION TAG SEQADV 4B3D MET A 169 UNP O74036 ILE 169 ENGINEERED MUTATION SEQADV 4B3D ALA A 201 UNP O74036 TYR 201 ENGINEERED MUTATION SEQADV 4B3D TYR A 202 UNP O74036 VAL 202 ENGINEERED MUTATION SEQADV 4B3D MET A 221 UNP O74036 LYS 221 ENGINEERED MUTATION SEQADV 4B3D ASN A 300 UNP O74036 ILE 300 ENGINEERED MUTATION SEQADV 4B3D MET C 107 UNP O74036 EXPRESSION TAG SEQADV 4B3D MET C 169 UNP O74036 ILE 169 ENGINEERED MUTATION SEQADV 4B3D ALA C 201 UNP O74036 TYR 201 ENGINEERED MUTATION SEQADV 4B3D TYR C 202 UNP O74036 VAL 202 ENGINEERED MUTATION SEQADV 4B3D MET C 221 UNP O74036 LYS 221 ENGINEERED MUTATION SEQADV 4B3D ASN C 300 UNP O74036 ILE 300 ENGINEERED MUTATION SEQRES 1 A 231 MET ALA THR ILE GLY ARG ILE SER THR GLY SER LYS SER SEQRES 2 A 231 LEU ASP LYS LEU LEU GLY GLY GLY ILE GLU THR GLN ALA SEQRES 3 A 231 ILE THR GLU VAL PHE GLY GLU PHE GLY SER GLY LYS THR SEQRES 4 A 231 GLN LEU ALA HIS THR LEU ALA VAL MET VAL GLN LEU PRO SEQRES 5 A 231 PRO GLU GLU GLY GLY LEU ASN GLY SER VAL MET TRP ILE SEQRES 6 A 231 ASP THR GLU ASN THR PHE ARG PRO GLU ARG ILE ARG GLU SEQRES 7 A 231 ILE ALA GLN ASN ARG GLY LEU ASP PRO ASP GLU VAL LEU SEQRES 8 A 231 LYS HIS ILE ALA TYR ALA ARG ALA PHE ASN SER ASN HIS SEQRES 9 A 231 GLN MET LEU LEU VAL GLN GLN ALA GLU ASP MET ILE LYS SEQRES 10 A 231 GLU LEU LEU ASN THR ASP ARG PRO VAL LYS LEU LEU ILE SEQRES 11 A 231 VAL ASP SER LEU THR SER HIS PHE ARG SER GLU TYR ILE SEQRES 12 A 231 GLY ARG GLY ALA LEU ALA GLU ARG GLN GLN LYS LEU ALA SEQRES 13 A 231 LYS HIS LEU ALA ASP LEU HIS ARG LEU ALA ASN LEU TYR SEQRES 14 A 231 ASP ILE ALA VAL PHE VAL THR ASN GLN VAL GLN ALA ASN SEQRES 15 A 231 GLY GLY HIS ILE LEU ALA HIS SER ALA THR LEU ARG VAL SEQRES 16 A 231 TYR LEU ARG LYS GLY LYS GLY GLY LYS ARG ILE ALA ARG SEQRES 17 A 231 LEU ILE ASP ALA PRO HIS LEU PRO GLU GLY GLU ALA VAL SEQRES 18 A 231 PHE SER ILE THR GLU LYS GLY ILE GLU ASP SEQRES 1 C 231 MET ALA THR ILE GLY ARG ILE SER THR GLY SER LYS SER SEQRES 2 C 231 LEU ASP LYS LEU LEU GLY GLY GLY ILE GLU THR GLN ALA SEQRES 3 C 231 ILE THR GLU VAL PHE GLY GLU PHE GLY SER GLY LYS THR SEQRES 4 C 231 GLN LEU ALA HIS THR LEU ALA VAL MET VAL GLN LEU PRO SEQRES 5 C 231 PRO GLU GLU GLY GLY LEU ASN GLY SER VAL MET TRP ILE SEQRES 6 C 231 ASP THR GLU ASN THR PHE ARG PRO GLU ARG ILE ARG GLU SEQRES 7 C 231 ILE ALA GLN ASN ARG GLY LEU ASP PRO ASP GLU VAL LEU SEQRES 8 C 231 LYS HIS ILE ALA TYR ALA ARG ALA PHE ASN SER ASN HIS SEQRES 9 C 231 GLN MET LEU LEU VAL GLN GLN ALA GLU ASP MET ILE LYS SEQRES 10 C 231 GLU LEU LEU ASN THR ASP ARG PRO VAL LYS LEU LEU ILE SEQRES 11 C 231 VAL ASP SER LEU THR SER HIS PHE ARG SER GLU TYR ILE SEQRES 12 C 231 GLY ARG GLY ALA LEU ALA GLU ARG GLN GLN LYS LEU ALA SEQRES 13 C 231 LYS HIS LEU ALA ASP LEU HIS ARG LEU ALA ASN LEU TYR SEQRES 14 C 231 ASP ILE ALA VAL PHE VAL THR ASN GLN VAL GLN ALA ASN SEQRES 15 C 231 GLY GLY HIS ILE LEU ALA HIS SER ALA THR LEU ARG VAL SEQRES 16 C 231 TYR LEU ARG LYS GLY LYS GLY GLY LYS ARG ILE ALA ARG SEQRES 17 C 231 LEU ILE ASP ALA PRO HIS LEU PRO GLU GLY GLU ALA VAL SEQRES 18 C 231 PHE SER ILE THR GLU LYS GLY ILE GLU ASP HET PO4 A1350 5 HET 5MI A1351 10 HET 5MI A1352 10 HET PO4 C1350 5 HET 5MI C1351 10 HET 5MI C1352 10 HETNAM PO4 PHOSPHATE ION HETNAM 5MI 5-METHYL INDOLE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 5MI 4(C9 H9 N) FORMUL 9 HOH *672(H2 O) HELIX 1 1 SER A 117 LEU A 124 1 8 HELIX 2 2 GLY A 143 VAL A 155 1 13 HELIX 3 3 PRO A 158 GLY A 162 5 5 HELIX 4 4 ARG A 178 ASN A 188 1 11 HELIX 5 5 ASP A 192 HIS A 199 1 8 HELIX 6 6 ASN A 207 LEU A 226 1 20 HELIX 7 7 THR A 241 TYR A 248 1 8 HELIX 8 8 GLY A 252 ASP A 276 1 25 HELIX 9 9 LYS A 319 GLY A 321 5 3 HELIX 10 10 SER C 117 LEU C 124 1 8 HELIX 11 11 GLY C 143 VAL C 155 1 13 HELIX 12 12 PRO C 158 GLY C 162 5 5 HELIX 13 13 ARG C 178 ARG C 189 1 12 HELIX 14 14 ASP C 192 HIS C 199 1 8 HELIX 15 15 ASN C 207 LEU C 226 1 20 HELIX 16 16 THR C 241 TYR C 248 1 8 HELIX 17 17 GLY C 252 ASP C 276 1 25 HELIX 18 18 LYS C 319 GLY C 321 5 3 SHEET 1 AA 2 ARG A 112 ILE A 113 0 SHEET 2 AA 2 ILE A 128 GLU A 129 -1 O ILE A 128 N ILE A 113 SHEET 1 AB 9 ILE A 200 ARG A 204 0 SHEET 2 AB 9 SER A 167 ASP A 172 1 O VAL A 168 N ALA A 201 SHEET 3 AB 9 VAL A 232 ASP A 238 1 N LYS A 233 O SER A 167 SHEET 4 AB 9 ALA A 278 GLN A 284 1 O ALA A 278 N LEU A 235 SHEET 5 AB 9 ALA A 132 GLY A 138 1 O ALA A 132 N VAL A 279 SHEET 6 AB 9 LEU A 311 LYS A 317 1 O LEU A 311 N GLU A 135 SHEET 7 AB 9 ARG A 323 ILE A 328 -1 O ILE A 324 N ARG A 316 SHEET 8 AB 9 ALA A 338 THR A 343 -1 O ALA A 338 N ALA A 325 SHEET 9 AB 9 GLY A 346 GLU A 348 -1 O GLY A 346 N THR A 343 SHEET 1 CA 2 ARG C 112 ILE C 113 0 SHEET 2 CA 2 ILE C 128 GLU C 129 -1 O ILE C 128 N ILE C 113 SHEET 1 CB 9 ILE C 200 ARG C 204 0 SHEET 2 CB 9 SER C 167 ASP C 172 1 O VAL C 168 N ALA C 201 SHEET 3 CB 9 VAL C 232 ASP C 238 1 N LYS C 233 O SER C 167 SHEET 4 CB 9 ALA C 278 GLN C 284 1 O ALA C 278 N LEU C 235 SHEET 5 CB 9 ALA C 132 GLY C 138 1 O ALA C 132 N VAL C 279 SHEET 6 CB 9 LEU C 311 LYS C 317 1 O LEU C 311 N GLU C 135 SHEET 7 CB 9 ARG C 323 ILE C 328 -1 O ILE C 324 N ARG C 316 SHEET 8 CB 9 ALA C 338 THR C 343 -1 O ALA C 338 N ALA C 325 SHEET 9 CB 9 GLY C 346 GLU C 348 -1 O GLY C 346 N THR C 343 CISPEP 1 ASP A 238 SER A 239 0 8.33 CISPEP 2 ASP C 238 SER C 239 0 8.50 SITE 1 AC1 13 GLU A 139 PHE A 140 GLY A 141 SER A 142 SITE 2 AC1 13 GLY A 143 LYS A 144 THR A 145 HOH A2049 SITE 3 AC1 13 HOH A2051 HOH A2054 HOH A2056 HOH A2347 SITE 4 AC1 13 HOH A2348 SITE 1 AC2 13 GLU C 139 PHE C 140 GLY C 141 SER C 142 SITE 2 AC2 13 GLY C 143 LYS C 144 THR C 145 HOH C2044 SITE 3 AC2 13 HOH C2048 HOH C2049 HOH C2050 HOH C2051 SITE 4 AC2 13 HOH C2318 SITE 1 AC3 4 MET C 169 ILE C 171 ALA C 203 LEU C 214 SITE 1 AC4 4 MET A 169 ILE A 171 LEU A 214 ALA A 218 SITE 1 AC5 3 ARG C 204 LYS C 322 HOH C2292 SITE 1 AC6 3 ARG A 204 PHE A 206 LYS A 322 CRYST1 40.280 87.246 62.628 90.00 91.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024826 0.000000 0.000650 0.00000 SCALE2 0.000000 0.011462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015973 0.00000 MTRIX1 1 -0.999930 -0.011870 0.000850 21.51490 1 MTRIX2 1 0.011870 -0.999930 0.002390 -23.87217 1 MTRIX3 1 0.000820 0.002400 1.000000 31.20703 1