HEADER TRANSFERASE 31-JUL-12 4B4L TITLE CRYSTAL STRUCTURE OF AN ARD DAP-KINASE 1 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC AND AUTOREGULATORY DOMAIN, RESIDUES 1-334; COMPND 5 SYNONYM: DAPK1, DAP KINASE 1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM30 KEYWDS TRANSFERASE, AUTOINHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR K.TEMMERMAN,V.POGENBERG,W.JONKO,M.WILMANNS REVDAT 4 20-DEC-23 4B4L 1 REMARK REVDAT 3 05-MAR-14 4B4L 1 JRNL REVDAT 2 05-FEB-14 4B4L 1 JRNL REVDAT 1 21-AUG-13 4B4L 0 JRNL AUTH K.TEMMERMAN,I.DE DIEGO,V.POGENBERG,B.SIMON,W.JONKO,X.LI, JRNL AUTH 2 M.WILMANNS JRNL TITL A PEF/Y SUBSTRATE RECOGNITION AND SIGNATURE MOTIF PLAYS A JRNL TITL 2 CRITICAL ROLE IN DAPK-RELATED KINASE ACTIVITY. JRNL REF CHEM.BIOL. V. 21 264 2014 JRNL REFN ISSN 1074-5521 JRNL PMID 24440081 JRNL DOI 10.1016/J.CHEMBIOL.2013.12.008 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 34315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2320 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : 1.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2555 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3440 ; 1.312 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.387 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;36.552 ;24.711 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;12.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.482 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1872 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2286 -36.0760 9.5623 REMARK 3 T TENSOR REMARK 3 T11: 0.0767 T22: 0.0470 REMARK 3 T33: 0.0883 T12: -0.0094 REMARK 3 T13: -0.0009 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 5.1707 L22: 3.4352 REMARK 3 L33: 5.5588 L12: 1.1500 REMARK 3 L13: -2.0377 L23: -0.2971 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.1135 S13: -0.2174 REMARK 3 S21: -0.0712 S22: -0.0919 S23: 0.1415 REMARK 3 S31: 0.5062 S32: -0.2972 S33: 0.1423 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 95 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9700 -35.2889 8.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.0415 REMARK 3 T33: 0.0752 T12: 0.0023 REMARK 3 T13: 0.0045 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.4652 L22: 0.9262 REMARK 3 L33: 0.5901 L12: -0.1427 REMARK 3 L13: -0.0046 L23: 0.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -0.0360 S13: -0.2204 REMARK 3 S21: -0.0167 S22: -0.0693 S23: 0.1121 REMARK 3 S31: 0.1303 S32: -0.0502 S33: 0.0398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0078 -15.5703 14.6922 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.0497 REMARK 3 T33: 0.0684 T12: -0.0066 REMARK 3 T13: -0.0141 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.9653 L22: 1.6638 REMARK 3 L33: 1.3297 L12: -0.1069 REMARK 3 L13: 0.2016 L23: 0.8547 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0404 S13: 0.1121 REMARK 3 S21: 0.0859 S22: 0.0726 S23: -0.2427 REMARK 3 S31: -0.0102 S32: 0.1674 S33: -0.0439 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2026 -22.2113 22.1351 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0409 REMARK 3 T33: 0.0562 T12: 0.0083 REMARK 3 T13: 0.0102 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.0976 L22: 2.0542 REMARK 3 L33: 0.5816 L12: 0.5834 REMARK 3 L13: 0.0339 L23: 0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.0354 S13: -0.0464 REMARK 3 S21: 0.2476 S22: -0.0132 S23: 0.0074 REMARK 3 S31: 0.0246 S32: -0.0059 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 237 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6032 -5.6372 20.7709 REMARK 3 T TENSOR REMARK 3 T11: 0.0456 T22: 0.0290 REMARK 3 T33: 0.0431 T12: 0.0146 REMARK 3 T13: 0.0028 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.1292 L22: 2.6512 REMARK 3 L33: 0.5856 L12: 0.5853 REMARK 3 L13: -0.1079 L23: 0.3417 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.1426 S13: 0.0196 REMARK 3 S21: 0.2517 S22: 0.0364 S23: -0.0279 REMARK 3 S31: -0.0082 S32: 0.0055 S33: -0.0405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053576. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SILICON 111 CRYSTAL REMARK 200 OPTICS : PT COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34315 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 59.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2XUU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PH 5.5, 25%(W/V) POLYETHYLENE GLYCOL 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.69250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.30150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.89900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.30150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.69250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.89900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 LYS A 304 REMARK 465 TRP A 305 REMARK 465 LYS A 306 REMARK 465 GLN A 307 REMARK 465 SER A 308 REMARK 465 VAL A 309 REMARK 465 ARG A 310 REMARK 465 LEU A 311 REMARK 465 ILE A 312 REMARK 465 SER A 313 REMARK 465 LEU A 314 REMARK 465 CYS A 315 REMARK 465 GLN A 316 REMARK 465 ARG A 317 REMARK 465 LEU A 318 REMARK 465 SER A 319 REMARK 465 ARG A 320 REMARK 465 SER A 321 REMARK 465 PHE A 322 REMARK 465 LEU A 323 REMARK 465 SER A 324 REMARK 465 ARG A 325 REMARK 465 SER A 326 REMARK 465 ASN A 327 REMARK 465 MET A 328 REMARK 465 SER A 329 REMARK 465 VAL A 330 REMARK 465 ALA A 331 REMARK 465 ARG A 332 REMARK 465 SER A 333 REMARK 465 ASP A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 7 CG CD OE1 OE2 REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 -165.22 -127.51 REMARK 500 ASP A 139 35.13 -143.21 REMARK 500 ASP A 161 85.04 66.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2263 DISTANCE = 7.67 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IG1 RELATED DB: PDB REMARK 900 1.8A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTICDOMAIN OF REMARK 900 DEATH-ASSOCIATED PROTEIN KINASE WITH ATPANALOGUE AND MN. REMARK 900 RELATED ID: 1JKK RELATED DB: PDB REMARK 900 2.4A X-RAY STRUCTURE OF TERNARY COMPLEX OF A CATALYTICDOMAIN OF REMARK 900 DEATH-ASSOCIATED PROTEIN KINASE WITH ATPANALOGUE AND MG. REMARK 900 RELATED ID: 1JKL RELATED DB: PDB REMARK 900 1.6A X-RAY STRUCTURE OF BINARY COMPLEX OF A CATALYTICDOMAIN OF REMARK 900 DEATH-ASSOCIATED PROTEIN KINASE WITH ATP ANALOGUE REMARK 900 RELATED ID: 1JKS RELATED DB: PDB REMARK 900 1.5A X-RAY STRUCTURE OF APO FORM OF A CATALYTIC DOMAIN OFDEATH- REMARK 900 ASSOCIATED PROTEIN KINASE REMARK 900 RELATED ID: 1JKT RELATED DB: PDB REMARK 900 TETRAGONAL CRYSTAL FORM OF A CATALYTIC DOMAIN OF DEATH -ASSOCIATED REMARK 900 PROTEIN KINASE REMARK 900 RELATED ID: 1P4F RELATED DB: PDB REMARK 900 DEATH ASSOCIATED PROTEIN KINASE CATALYTIC DOMAIN WITH REMARK 900 BOUNDINHIBITOR FRAGMENT REMARK 900 RELATED ID: 1YR5 RELATED DB: PDB REMARK 900 1.7-A STRUCTURE OF CALMODULIN BOUND TO A PEPTIDE FROM DAPKINASE REMARK 900 RELATED ID: 2W4J RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE 2-277 REMARK 900 RELATED ID: 2W4K RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE 2-302 REMARK 900 RELATED ID: 2X0G RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF A DAP-KINASE CALMODULIN COMPLEX REMARK 900 RELATED ID: 2XUU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DAP-KINASE 1 MUTANT REMARK 900 RELATED ID: 2XZS RELATED DB: PDB REMARK 900 DEATH ASSOCIATED PROTEIN KINASE 1 RESIDUES 1-312 REMARK 900 RELATED ID: 2Y0A RELATED DB: PDB REMARK 900 STRUCTURE OF DAPK1 CONSTRUCT RESIDUES 1-304 REMARK 900 RELATED ID: 2Y4P RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF DAPK-1 CATALYTIC DOMAIN REMARK 900 RELATED ID: 2Y4V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN CALMODULIN IN COMPLEX WITH A DAP KINASE- REMARK 900 1 MUTANT (W305Y) PEPTIDE REMARK 900 RELATED ID: 2YAK RELATED DB: PDB REMARK 900 STRUCTURE OF DEATH-ASSOCIATED PROTEIN KINASE 1 (DAPK1) IN COMPLEX REMARK 900 WITH A RUTHENIUM OCTASPORINE LIGAND (OSV) REMARK 900 RELATED ID: 3ZXT RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF DAPK-1 CATALYTIC DOMAIN IN COMPLEX WITH AMPPCP- REMARK 900 MG DBREF 4B4L A 1 334 UNP P53355 DAPK1_HUMAN 1 334 SEQADV 4B4L GLY A -1 UNP P53355 EXPRESSION TAG SEQADV 4B4L ALA A 0 UNP P53355 EXPRESSION TAG SEQADV 4B4L ALA A 302 UNP P53355 ARG 302 ENGINEERED MUTATION SEQRES 1 A 336 GLY ALA MET THR VAL PHE ARG GLN GLU ASN VAL ASP ASP SEQRES 2 A 336 TYR TYR ASP THR GLY GLU GLU LEU GLY SER GLY GLN PHE SEQRES 3 A 336 ALA VAL VAL LYS LYS CYS ARG GLU LYS SER THR GLY LEU SEQRES 4 A 336 GLN TYR ALA ALA LYS PHE ILE LYS LYS ARG ARG THR LYS SEQRES 5 A 336 SER SER ARG ARG GLY VAL SER ARG GLU ASP ILE GLU ARG SEQRES 6 A 336 GLU VAL SER ILE LEU LYS GLU ILE GLN HIS PRO ASN VAL SEQRES 7 A 336 ILE THR LEU HIS GLU VAL TYR GLU ASN LYS THR ASP VAL SEQRES 8 A 336 ILE LEU ILE LEU GLU LEU VAL ALA GLY GLY GLU LEU PHE SEQRES 9 A 336 ASP PHE LEU ALA GLU LYS GLU SER LEU THR GLU GLU GLU SEQRES 10 A 336 ALA THR GLU PHE LEU LYS GLN ILE LEU ASN GLY VAL TYR SEQRES 11 A 336 TYR LEU HIS SER LEU GLN ILE ALA HIS PHE ASP LEU LYS SEQRES 12 A 336 PRO GLU ASN ILE MET LEU LEU ASP ARG ASN VAL PRO LYS SEQRES 13 A 336 PRO ARG ILE LYS ILE ILE ASP PHE GLY LEU ALA HIS LYS SEQRES 14 A 336 ILE ASP PHE GLY ASN GLU PHE LYS ASN ILE PHE GLY THR SEQRES 15 A 336 PRO GLU PHE VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO SEQRES 16 A 336 LEU GLY LEU GLU ALA ASP MET TRP SER ILE GLY VAL ILE SEQRES 17 A 336 THR TYR ILE LEU LEU SER GLY ALA SER PRO PHE LEU GLY SEQRES 18 A 336 ASP THR LYS GLN GLU THR LEU ALA ASN VAL SER ALA VAL SEQRES 19 A 336 ASN TYR GLU PHE GLU ASP GLU TYR PHE SER ASN THR SER SEQRES 20 A 336 ALA LEU ALA LYS ASP PHE ILE ARG ARG LEU LEU VAL LYS SEQRES 21 A 336 ASP PRO LYS LYS ARG MET THR ILE GLN ASP SER LEU GLN SEQRES 22 A 336 HIS PRO TRP ILE LYS PRO LYS ASP THR GLN GLN ALA LEU SEQRES 23 A 336 SER ARG LYS ALA SER ALA VAL ASN MET GLU LYS PHE LYS SEQRES 24 A 336 LYS PHE ALA ALA ALA LYS LYS TRP LYS GLN SER VAL ARG SEQRES 25 A 336 LEU ILE SER LEU CYS GLN ARG LEU SER ARG SER PHE LEU SEQRES 26 A 336 SER ARG SER ASN MET SER VAL ALA ARG SER ASP HET 1PE A1304 16 HET 1PE A1305 16 HET 1PE A1306 16 HET SO4 A1307 5 HET SO4 A1308 5 HET SO4 A1309 5 HET SO4 A1310 5 HET SO4 A1311 5 HET SO4 A1312 5 HET SO4 A1313 5 HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 2 1PE 3(C10 H22 O6) FORMUL 5 SO4 7(O4 S 2-) FORMUL 12 HOH *264(H2 O) HELIX 1 1 ASN A 8 ASP A 11 5 4 HELIX 2 2 SER A 57 ILE A 71 1 15 HELIX 3 3 GLU A 100 ALA A 106 1 7 HELIX 4 4 THR A 112 LEU A 133 1 22 HELIX 5 5 LYS A 141 GLU A 143 5 3 HELIX 6 6 THR A 180 VAL A 184 5 5 HELIX 7 7 ALA A 185 ASN A 190 1 6 HELIX 8 8 LEU A 196 GLY A 213 1 18 HELIX 9 9 THR A 221 VAL A 232 1 12 HELIX 10 10 GLU A 237 SER A 242 1 6 HELIX 11 11 SER A 245 LEU A 256 1 12 HELIX 12 12 ASP A 259 ARG A 263 5 5 HELIX 13 13 THR A 265 HIS A 272 1 8 HELIX 14 14 ASP A 279 SER A 289 1 11 HELIX 15 15 ASN A 292 LYS A 303 1 12 SHEET 1 AA 5 TYR A 13 SER A 21 0 SHEET 2 AA 5 ALA A 25 GLU A 32 -1 O VAL A 27 N LEU A 19 SHEET 3 AA 5 GLN A 38 LYS A 45 -1 O TYR A 39 N CYS A 30 SHEET 4 AA 5 ASP A 88 GLU A 94 -1 O VAL A 89 N ILE A 44 SHEET 5 AA 5 LEU A 79 GLU A 84 -1 N HIS A 80 O ILE A 92 SHEET 1 AB 2 ILE A 135 ALA A 136 0 SHEET 2 AB 2 HIS A 166 LYS A 167 -1 O HIS A 166 N ALA A 136 SHEET 1 AC 2 ILE A 145 LEU A 147 0 SHEET 2 AC 2 ILE A 157 ILE A 159 -1 O LYS A 158 N MET A 146 SITE 1 AC1 10 GLY A 20 SER A 21 LYS A 42 ILE A 77 SITE 2 AC1 10 LEU A 93 ASP A 161 HOH A2024 HOH A2080 SITE 3 AC1 10 HOH A2108 HOH A2258 SITE 1 AC2 8 THR A 15 GLY A 16 VAL A 26 LYS A 28 SITE 2 AC2 8 PHE A 43 SER A 110 GLU A 115 LYS A 287 SITE 1 AC3 6 GLU A 17 LEU A 19 LYS A 29 GLN A 38 SITE 2 AC3 6 ALA A 97 GLU A 192 SITE 1 AC4 3 ARG A 53 ARG A 54 ARG A 254 SITE 1 AC5 6 ARG A 47 LYS A 50 PHE A 236 ARG A 253 SITE 2 AC5 6 HOH A2260 HOH A2261 SITE 1 AC6 7 ARG A 47 LYS A 50 SER A 57 ARG A 58 SITE 2 AC6 7 HOH A2049 HOH A2050 HOH A2064 SITE 1 AC7 6 LYS A 108 GLU A 109 SER A 110 HOH A2101 SITE 2 AC7 6 HOH A2102 HOH A2262 SITE 1 AC8 5 GLU A 7 ASN A 8 TYR A 12 LYS A 276 SITE 2 AC8 5 HOH A2003 SITE 1 AC9 5 ALA A 97 ARG A 150 ASN A 151 LYS A 262 SITE 2 AC9 5 HOH A2150 SITE 1 BC1 2 ARG A 5 LYS A 69 CRYST1 49.385 83.798 84.603 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011820 0.00000