HEADER CELL ADHESION 31-JUL-12 4B4P TITLE CRYSTAL STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF. COMPND MOL_ID: 1; COMPND 2 MOLECULE: F18 FIMBRIAL ADHESIN AC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LECTIN DOMAIN, RESIDUES 35-185; COMPND 5 SYNONYM: FEDF; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: FRAGMENT ENCOMPASSES RESIDUES 15-165 OF MATURE FEDF COMPND 8 PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: 107/86; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDEST14 KEYWDS CELL ADHESION, FIMBRIAE, BACTERIAL ADHESINS, PROTEIN-CARBOHYDRATE KEYWDS 2 INTERACTIONS, ABH BLOOD GROUP BINDING, STEC, ETEC, SPR, MST, BSI EXPDTA X-RAY DIFFRACTION AUTHOR K.MOONENS,J.BOUCKAERT,A.CODDENS,T.TRAN,S.PANJIKAR,M.DE KERPEL,E.COX, AUTHOR 2 H.REMAUT,H.DE GREVE REVDAT 4 16-OCT-19 4B4P 1 REMARK REVDAT 3 17-JUL-19 4B4P 1 REMARK REVDAT 2 03-OCT-12 4B4P 1 SOURCE JRNL REVDAT 1 15-AUG-12 4B4P 0 JRNL AUTH K.MOONENS,J.BOUCKAERT,A.CODDENS,T.TRAN,S.PANJIKAR, JRNL AUTH 2 M.DE KERPEL,E.COX,H.REMAUT,H.DE GREVE JRNL TITL STRUCTURAL INSIGHT IN HISTO-BLOOD GROUP BINDING BY THE F18 JRNL TITL 2 FIMBRIAL ADHESIN FEDF. JRNL REF MOL.MICROBIOL. V. 86 82 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22812428 JRNL DOI 10.1111/J.1365-2958.2012.08174.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.IMBERECHTS,P.WILD,G.CHARLIER,H.DE GREVE,P.LINTERMANS, REMARK 1 AUTH 2 P.POHL REMARK 1 TITL CHARACTERIZATION OF F18 FIMBRIAL GENES FEDE AND FEDF REMARK 1 TITL 2 INVOLVED IN ADHESION AND LENGTH OF ENTEROTOXEMIC ESCHERICHIA REMARK 1 TITL 3 COLI STRAIN 107/86. REMARK 1 REF MICROB.PATHOG. V. 21 183 1996 REMARK 1 REFN ISSN 0882-4010 REMARK 1 PMID 8878015 REMARK 1 DOI 10.1006/MPAT.1996.0053 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1051 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1753 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2232 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3039 ; 1.690 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;42.809 ;24.839 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;12.946 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 5.389 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1685 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 941 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1502 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 137 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.187 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1437 ; 1.250 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2258 ; 2.195 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 932 ; 4.842 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 780 ; 7.124 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 7 A 55 2 REMARK 3 1 B 7 B 55 2 REMARK 3 2 A 65 A 114 2 REMARK 3 2 B 65 B 114 2 REMARK 3 3 A 128 A 147 2 REMARK 3 3 B 128 B 147 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 475 ; 0.13 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 431 ; 0.62 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 475 ; 1.32 ; 1.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 431 ; 2.42 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4B4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1290053564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.77 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.94 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, PHASER, SIGMAA, RESOLVE, BP3, ABS, REMARK 200 MLPHARE, SHELXE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE, 25.5% (W/V) REMARK 280 PEG 4000 AND 15% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.09050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.42850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.19100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.42850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.09050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.19100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 SER A 124 REMARK 465 ALA A 148 REMARK 465 ILE A 149 REMARK 465 ALA A 150 REMARK 465 LYS A 151 REMARK 465 ASN B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 ALA B 4 REMARK 465 SER B 5 REMARK 465 ALA B 148 REMARK 465 ILE B 149 REMARK 465 ALA B 150 REMARK 465 LYS B 151 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 61 CG CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2045 O HOH B 2064 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2010 O HOH B 2068 3554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 126 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 59 56.91 33.87 REMARK 500 ASP A 126 119.87 -25.12 REMARK 500 ASN A 135 -154.61 -140.69 REMARK 500 SER B 124 59.58 -94.23 REMARK 500 ASN B 135 -158.54 -143.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 125 ASP A 126 146.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 1148 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 1149 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4B4Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF REMARK 900 IN COMPLEX WITH BLOOD GROUP A TYPE 1 HEXASACCHARIDE REMARK 900 RELATED ID: 4B4R RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LECTIN DOMAIN OF F18 FIMBRIAL ADHESIN FEDF REMARK 900 IN COMPLEX WITH BLOOD GROUP B TYPE 1 HEXASACCHARIDE DBREF 4B4P A 1 151 UNP Q47212 Q47212_ECOLX 35 185 DBREF 4B4P B 1 151 UNP Q47212 Q47212_ECOLX 35 185 SEQRES 1 A 151 ASN SER SER ALA SER SER ALA GLN VAL THR GLY THR LEU SEQRES 2 A 151 LEU GLY THR GLY LYS THR ASN THR THR GLN MET PRO ALA SEQRES 3 A 151 LEU TYR THR TRP GLN HIS GLN ILE TYR ASN VAL ASN PHE SEQRES 4 A 151 ILE PRO SER SER SER GLY THR LEU THR CYS GLN ALA GLY SEQRES 5 A 151 THR ILE LEU VAL TRP LYS ASN GLY ARG GLU THR GLN TYR SEQRES 6 A 151 ALA LEU GLU CYS ARG VAL SER ILE HIS HIS SER SER GLY SEQRES 7 A 151 SER ILE ASN GLU SER GLN TRP GLY GLN GLN SER GLN VAL SEQRES 8 A 151 GLY PHE GLY THR ALA CYS GLY ASN LYS LYS CYS ARG PHE SEQRES 9 A 151 THR GLY PHE GLU ILE SER LEU ARG ILE PRO PRO ASN ALA SEQRES 10 A 151 GLN THR TYR PRO LEU SER SER GLY ASP LEU LYS GLY SER SEQRES 11 A 151 PHE SER LEU THR ASN LYS GLU VAL ASN TRP SER ALA SER SEQRES 12 A 151 ILE TYR VAL PRO ALA ILE ALA LYS SEQRES 1 B 151 ASN SER SER ALA SER SER ALA GLN VAL THR GLY THR LEU SEQRES 2 B 151 LEU GLY THR GLY LYS THR ASN THR THR GLN MET PRO ALA SEQRES 3 B 151 LEU TYR THR TRP GLN HIS GLN ILE TYR ASN VAL ASN PHE SEQRES 4 B 151 ILE PRO SER SER SER GLY THR LEU THR CYS GLN ALA GLY SEQRES 5 B 151 THR ILE LEU VAL TRP LYS ASN GLY ARG GLU THR GLN TYR SEQRES 6 B 151 ALA LEU GLU CYS ARG VAL SER ILE HIS HIS SER SER GLY SEQRES 7 B 151 SER ILE ASN GLU SER GLN TRP GLY GLN GLN SER GLN VAL SEQRES 8 B 151 GLY PHE GLY THR ALA CYS GLY ASN LYS LYS CYS ARG PHE SEQRES 9 B 151 THR GLY PHE GLU ILE SER LEU ARG ILE PRO PRO ASN ALA SEQRES 10 B 151 GLN THR TYR PRO LEU SER SER GLY ASP LEU LYS GLY SER SEQRES 11 B 151 PHE SER LEU THR ASN LYS GLU VAL ASN TRP SER ALA SER SEQRES 12 B 151 ILE TYR VAL PRO ALA ILE ALA LYS HET BR A1148 1 HET BR A1149 1 HET BR A1150 1 HET BR A1151 1 HET BR A1152 1 HET BR A1153 1 HET SO4 A1154 5 HET BR A1155 1 HET BR B1148 1 HET BR B1149 1 HET BR B1150 1 HET BR B1151 1 HET BR B1152 1 HET BR B1153 1 HET SO4 B1154 5 HETNAM BR BROMIDE ION HETNAM SO4 SULFATE ION FORMUL 3 BR 13(BR 1-) FORMUL 9 SO4 2(O4 S 2-) FORMUL 18 HOH *176(H2 O) HELIX 1 1 GLY A 11 GLY A 15 5 5 HELIX 2 2 PRO A 114 GLN A 118 5 5 HELIX 3 3 GLY B 11 GLY B 15 5 5 HELIX 4 4 ASN B 116 TYR B 120 5 5 SHEET 1 AA 5 GLN A 8 THR A 10 0 SHEET 2 AA 5 ASN A 139 VAL A 146 -1 O SER A 143 N THR A 10 SHEET 3 AA 5 LEU A 127 THR A 134 -1 O LEU A 127 N VAL A 146 SHEET 4 AA 5 GLY A 45 ALA A 51 -1 O THR A 46 N THR A 134 SHEET 5 AA 5 GLN A 88 PHE A 93 -1 O SER A 89 N CYS A 49 SHEET 1 AB10 GLY A 17 ALA A 26 0 SHEET 2 AB10 THR A 29 PHE A 39 -1 O THR A 29 N ALA A 26 SHEET 3 AB10 PHE A 104 ARG A 112 -1 O PHE A 104 N PHE A 39 SHEET 4 AB10 GLU A 68 HIS A 75 -1 O GLU A 68 N ARG A 112 SHEET 5 AB10 ILE A 80 GLU A 82 -1 O ASN A 81 N ILE A 73 SHEET 6 AB10 ILE B 80 GLU B 82 -1 O ILE B 80 N GLU A 82 SHEET 7 AB10 GLU B 68 HIS B 75 -1 O ILE B 73 N ASN B 81 SHEET 8 AB10 PHE B 104 ARG B 112 -1 N THR B 105 O HIS B 74 SHEET 9 AB10 THR B 29 PHE B 39 -1 O TRP B 30 N LEU B 111 SHEET 10 AB10 GLY B 17 ALA B 26 -1 N LYS B 18 O ASN B 36 SHEET 1 AC 2 THR A 53 LYS A 58 0 SHEET 2 AC 2 ARG A 61 ALA A 66 -1 O ARG A 61 N LYS A 58 SHEET 1 AD 2 ALA A 96 CYS A 97 0 SHEET 2 AD 2 LYS A 100 LYS A 101 -1 O LYS A 100 N CYS A 97 SHEET 1 BA 5 GLN B 8 THR B 10 0 SHEET 2 BA 5 ASN B 139 VAL B 146 -1 O SER B 143 N THR B 10 SHEET 3 BA 5 LEU B 127 THR B 134 -1 O LEU B 127 N VAL B 146 SHEET 4 BA 5 GLY B 45 ALA B 51 -1 O THR B 46 N THR B 134 SHEET 5 BA 5 GLN B 88 PHE B 93 -1 O SER B 89 N CYS B 49 SHEET 1 BB 3 ARG B 61 ALA B 66 0 SHEET 2 BB 3 THR B 53 LYS B 58 -1 O ILE B 54 N TYR B 65 SHEET 3 BB 3 LEU B 122 SER B 123 -1 N SER B 123 O LEU B 55 SHEET 1 BC 2 ALA B 96 CYS B 97 0 SHEET 2 BC 2 LYS B 100 LYS B 101 -1 O LYS B 100 N CYS B 97 SSBOND 1 CYS A 49 CYS A 69 1555 1555 2.04 SSBOND 2 CYS A 97 CYS A 102 1555 1555 2.06 SSBOND 3 CYS B 49 CYS B 69 1555 1555 2.07 SSBOND 4 CYS B 97 CYS B 102 1555 1555 2.06 SITE 1 AC1 4 THR A 95 ALA A 96 THR B 95 ALA B 96 SITE 1 AC2 5 GLN A 31 ARG A 70 SER A 72 GLU A 108 SITE 2 AC2 5 SER A 110 SITE 1 AC3 4 GLN A 31 ARG A 70 TRP A 85 SER A 110 SITE 1 AC4 2 THR A 48 CYS A 49 SITE 1 AC5 1 ALA A 7 SITE 1 AC6 2 LYS A 100 LYS A 101 SITE 1 AC7 10 HIS A 75 SER A 77 SER A 79 CYS A 97 SITE 2 AC7 10 LYS A 100 HOH A2054 HOH A2055 HOH A2081 SITE 3 AC7 10 VAL B 91 GLY B 92 SITE 1 AC8 3 MET A 24 TYR A 28 GLY A 60 SITE 1 AC9 3 ARG B 70 GLU B 108 SER B 110 SITE 1 BC1 3 SER B 6 ALA B 7 THR B 22 SITE 1 BC2 1 THR B 48 SITE 1 BC3 3 GLN B 31 ARG B 70 SER B 110 SITE 1 BC4 3 ALA B 51 GLN B 87 GLN B 88 SITE 1 BC5 1 ASN B 99 SITE 1 BC6 9 VAL A 91 GLY A 92 HOH A2073 HIS B 75 SITE 2 BC6 9 SER B 77 SER B 79 CYS B 97 LYS B 100 SITE 3 BC6 9 HOH B2048 CRYST1 36.181 74.382 98.857 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027639 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010116 0.00000